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Volumn 94, Issue 5, 2008, Pages 1630-1637

Passage times for polymer translocation pulled through a narrow pore

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; NANOMATERIAL;

EID: 41449091007     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1529/biophysj.107.116434     Document Type: Article
Times cited : (59)

References (50)
  • 1
    • 0025999145 scopus 로고
    • Reconstitution of a protein translocation system containing purified SecY, SecE, and SecA from Escherichia coli
    • Akimaru, J., S. Matsuyama, H. Tokuda, and S. Mizushima. 1991. Reconstitution of a protein translocation system containing purified SecY, SecE, and SecA from Escherichia coli. Proc. Natl. Acad. Sci. USA. 88:6545-6549.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 6545-6549
    • Akimaru, J.1    Matsuyama, S.2    Tokuda, H.3    Mizushima, S.4
  • 2
    • 0027938423 scopus 로고
    • Translocation of DNA across bacterial membranes
    • Dreiseikelmann, B. 1994. Translocation of DNA across bacterial membranes. Microbiol. Rev. 58:293-316.
    • (1994) Microbiol. Rev , vol.58 , pp. 293-316
    • Dreiseikelmann, B.1
  • 3
    • 0024822215 scopus 로고
    • Blockade of a mitochondrial cationic channel by an addressing peptide: An electrophysiological study
    • Henry, J.-P., J.-F. Chich, D. Goldschmidt, and M. Thieffry. 1989. Blockade of a mitochondrial cationic channel by an addressing peptide: an electrophysiological study. J. Membr. Biol. 112:139-147.
    • (1989) J. Membr. Biol , vol.112 , pp. 139-147
    • Henry, J.-P.1    Chich, J.-F.2    Goldschmidt, D.3    Thieffry, M.4
  • 4
    • 0027424601 scopus 로고
    • Protein translocation into proteoliposomes reconstituted from purified components of the endoplasmic reticulum membrane
    • Gorlich, D., and T. A. Rappaport. 1993. Protein translocation into proteoliposomes reconstituted from purified components of the endoplasmic reticulum membrane. Cell. 75:615-630.
    • (1993) Cell , vol.75 , pp. 615-630
    • Gorlich, D.1    Rappaport, T.A.2
  • 5
    • 0029979607 scopus 로고    scopus 로고
    • Common principles of protein translocation across membranes
    • Schatz, G., and B. Dobberstein. 1996. Common principles of protein translocation across membranes. Science. 271:1519-1526.
    • (1996) Science , vol.271 , pp. 1519-1526
    • Schatz, G.1    Dobberstein, B.2
  • 6
    • 0030771374 scopus 로고    scopus 로고
    • DNA translocation across planar bilayers containing Bacillus subtilis ion channels
    • Szàbo, I., G. Bàthori, F. Tombola, M. Brini, A. Coppola, and M. Zoratti. 1997. DNA translocation across planar bilayers containing Bacillus subtilis ion channels. J. Biol. Chem. 272:25275-25282.
    • (1997) J. Biol. Chem , vol.272 , pp. 25275-25282
    • Szàbo, I.1    Bàthori, G.2    Tombola, F.3    Brini, M.4    Coppola, A.5    Zoratti, M.6
  • 8
    • 0036784335 scopus 로고    scopus 로고
    • Translocation of liposomes into cancer cells by cell-penetrating peptides penetrin and tat: A kinetic and efficacy study
    • Tseng, Y.-L., J.-J. Liu, and R.-L. Hong. 2002. Translocation of liposomes into cancer cells by cell-penetrating peptides penetrin and tat: a kinetic and efficacy study. Mol. Pharm. 62:864-872.
    • (2002) Mol. Pharm , vol.62 , pp. 864-872
    • Tseng, Y.-L.1    Liu, J.-J.2    Hong, R.-L.3
  • 10
    • 0030027968 scopus 로고    scopus 로고
    • Supervising the fold: Functional principles of molecular chaperons
    • Buchner, J. 1996. Supervising the fold: functional principles of molecular chaperons. FASEB J. 10:10-19.
    • (1996) FASEB J , vol.10 , pp. 10-19
    • Buchner, J.1
  • 11
    • 27744493266 scopus 로고    scopus 로고
    • Modeling the endosomal escape of cell-penetrating peptides: Transmembrane pH gradient driven translocation across phospholipid bilayers
    • Magzoub, M., A. Pramanik, and A. Gräslund. 2005. Modeling the endosomal escape of cell-penetrating peptides: transmembrane pH gradient driven translocation across phospholipid bilayers. Biochemistry. 44:14890-14897.
    • (2005) Biochemistry , vol.44 , pp. 14890-14897
    • Magzoub, M.1    Pramanik, A.2    Gräslund, A.3
  • 12
    • 0034594940 scopus 로고    scopus 로고
    • Single molecule studies of the effect of template tension on T7 DNA polymerase activity
    • Wuite, G. J. L., S. B. Smith, M. Young, D. Keller, and C. Bustamante. 2000. Single molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature. 404:103-106.
    • (2000) Nature , vol.404 , pp. 103-106
    • Wuite, G.J.L.1    Smith, S.B.2    Young, M.3    Keller, D.4    Bustamante, C.5
  • 13
    • 33749558576 scopus 로고    scopus 로고
    • Structural rearrangements at the translocation pore of the human glutamate transporter, EAAT1
    • Leighton, B. H., R. P. Seal, S. D. Watts, M. O. Skyba, and S. G. Amara. 2006. Structural rearrangements at the translocation pore of the human glutamate transporter, EAAT1. J. Biol. Chem. 281:29788-29796.
    • (2006) J. Biol. Chem , vol.281 , pp. 29788-29796
    • Leighton, B.H.1    Seal, R.P.2    Watts, S.D.3    Skyba, M.O.4    Amara, S.G.5
  • 14
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz, J. J., D. Branton, and D. W. Deamer. 1996. Characterization of individual polynucleotide molecules using a membrane channel. Proc. Natl. Acad. Sci. USA. 93:13770-13773.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Branton, D.2    Deamer, D.W.3
  • 16
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • Meller, A.,L. Nivon, and D. Branton. 2001. Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett. 86:3435-3438.
    • (2001) Phys. Rev. Lett , vol.86 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 17
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules
    • Akeson, M., D. Branton, J. J. Kasianowicz, E. Brandin, and D. W. Deamer. 1999. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules. Proc. Natl. Acad. Sci. USA. 77:3227-3233.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 19
    • 0036674122 scopus 로고    scopus 로고
    • Single molecule measurements of DNA transport through a nanopore
    • Meller, A., and D. Branton. 2002. Single molecule measurements of DNA transport through a nanopore. Electrophoresis. 23:2583-2591.
    • (2002) Electrophoresis , vol.23 , pp. 2583-2591
    • Meller, A.1    Branton, D.2
  • 21
    • 2942685818 scopus 로고    scopus 로고
    • Dynamics of molecular motors and polymer translocation with sequence heterogeneity
    • Kafri, Y., D. K. Lubensky, and D. R. Nelson. 2004. Dynamics of molecular motors and polymer translocation with sequence heterogeneity. Biophys. J. 86:3373-3391.
    • (2004) Biophys. J , vol.86 , pp. 3373-3391
    • Kafri, Y.1    Lubensky, D.K.2    Nelson, D.R.3
  • 22
    • 2642694705 scopus 로고    scopus 로고
    • Double-stranded DNA can be translocated across a planar membrane containing purified mitochondrial porin
    • Szàbo, I., G. Bathori, F. Tombola, A. Coppola, I. Schmehl, M. Brini, A. Ghazi, and M. Zoratti. 1998. Double-stranded DNA can be translocated across a planar membrane containing purified mitochondrial porin. FASEB J. 12:495-502.
    • (1998) FASEB J , vol.12 , pp. 495-502
    • Szàbo, I.1    Bathori, G.2    Tombola, F.3    Coppola, A.4    Schmehl, I.5    Brini, M.6    Ghazi, A.7    Zoratti, M.8
  • 23
    • 0035818604 scopus 로고    scopus 로고
    • Kinetics of duplex formation for individual DNA strands within a single protein nanopore
    • Howorka, S., L. Movileanu, O. Braha, and H. Bayley. 2001. Kinetics of duplex formation for individual DNA strands within a single protein nanopore. Proc. Natl. Acad. Sci. USA. 98:12996-13001.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 12996-13001
    • Howorka, S.1    Movileanu, L.2    Braha, O.3    Bayley, H.4
  • 24
    • 0034930381 scopus 로고    scopus 로고
    • Sequence-specific detection of individual DNA strands using engineered nanopores
    • Howorka, S., S. Cheley, and H. Bayley. 2001. Sequence-specific detection of individual DNA strands using engineered nanopores. Nat. Biotechnol. 19:636-639.
    • (2001) Nat. Biotechnol , vol.19 , pp. 636-639
    • Howorka, S.1    Cheley, S.2    Bayley, H.3
  • 27
    • 6144254211 scopus 로고    scopus 로고
    • Polymer translocation through a pore in a membrane
    • Sung, W., and P. J. Park. 1996. Polymer translocation through a pore in a membrane. Phys. Rev. Lett. 77:783-786.
    • (1996) Phys. Rev. Lett , vol.77 , pp. 783-786
    • Sung, W.1    Park, P.J.2
  • 28
    • 58649107405 scopus 로고    scopus 로고
    • The polymer barrier problem
    • Polymers. J. J. Kasianowicz, M. S. Z. Kellermayer, and D. W. Deamer, editors. Kluwer Press, Dordrecht, The Netherlands
    • Sung, W., and P. J. Park. 2002. The polymer barrier problem. In NATO Advanced Research Workshop. Structure and Dynamics of Confined Polymers. J. J. Kasianowicz, M. S. Z. Kellermayer, and D. W. Deamer, editors. Kluwer Press, Dordrecht, The Netherlands.
    • (2002) NATO Advanced Research Workshop. Structure and Dynamics of Confined
    • Sung, W.1    Park, P.J.2
  • 29
    • 4244177217 scopus 로고    scopus 로고
    • Coil-to-stretch transition, kink formation, and efficient barrier crossing of a flexible chain
    • Lee, S. K., and W. Sung. 2001. Coil-to-stretch transition, kink formation, and efficient barrier crossing of a flexible chain. Phys. Rev. E. 63: 012115.
    • (2001) Phys. Rev. E , vol.63 , pp. 012115
    • Lee, S.K.1    Sung, W.2
  • 30
    • 0035475970 scopus 로고    scopus 로고
    • Barrier crossing of a semiflexible ring polymer
    • Lee, K., and W. Sung. 2001. Barrier crossing of a semiflexible ring polymer. Phys. Rev. E. 64:041801.
    • (2001) Phys. Rev. E , vol.64 , pp. 041801
    • Lee, K.1    Sung, W.2
  • 31
    • 0034230278 scopus 로고    scopus 로고
    • Kramers problem for a polymer in a double well
    • Sebastian, K. L., and A. K. R. Paul. 2000. Kramers problem for a polymer in a double well. Phys. Rev. E. 62:927-939.
    • (2000) Phys. Rev. E , vol.62 , pp. 927-939
    • Sebastian, K.L.1    Paul, A.K.R.2
  • 32
    • 0342972925 scopus 로고    scopus 로고
    • Adsorption-assisted translocation of a chain molecule through a pore
    • Kumar, K. K., and K. L. Sebastian. 2000. Adsorption-assisted translocation of a chain molecule through a pore. Phys. Rev. E. 62:7536-7539.
    • (2000) Phys. Rev. E , vol.62 , pp. 7536-7539
    • Kumar, K.K.1    Sebastian, K.L.2
  • 33
    • 0000102029 scopus 로고    scopus 로고
    • Polymer translocation through a hole
    • Muthukumar, M. 1999. Polymer translocation through a hole. J. Chem. Phys. 111:10371-10374.
    • (1999) J. Chem. Phys , vol.111 , pp. 10371-10374
    • Muthukumar, M.1
  • 34
    • 0037444762 scopus 로고    scopus 로고
    • Polymer escape through a nanopore
    • Muthukumar, M. 2003. Polymer escape through a nanopore. J. Chem. Phys. 118:5174-5184.
    • (2003) J. Chem. Phys , vol.118 , pp. 5174-5184
    • Muthukumar, M.1
  • 35
    • 0035794251 scopus 로고    scopus 로고
    • Translocation of a confined polymer through a hole
    • Muthukumar, M. 2001. Translocation of a confined polymer through a hole. Phys. Rev. Lett. 86:3188-3191.
    • (2001) Phys. Rev. Lett , vol.86 , pp. 3188-3191
    • Muthukumar, M.1
  • 36
    • 0036672774 scopus 로고    scopus 로고
    • Modeling of polynucleotide translocation through protein pores and nanotubes
    • Muthukumar, M. 2002. Modeling of polynucleotide translocation through protein pores and nanotubes. Electrophoresis. 23:2697-2703.
    • (2002) Electrophoresis , vol.23 , pp. 2697-2703
    • Muthukumar, M.1
  • 37
    • 1642329940 scopus 로고    scopus 로고
    • Polymer translocation through ananopore. II. Excluded volume effect
    • Kong, C. Y., and M. Muthukumar. 2004. Polymer translocation through ananopore. II. Excluded volume effect. J. Chem. Phys. 120:3460-3466.
    • (2004) J. Chem. Phys , vol.120 , pp. 3460-3466
    • Kong, C.Y.1    Muthukumar, M.2
  • 38
    • 0033517627 scopus 로고    scopus 로고
    • Steady state permeation rate of homopolymer chain molecules through a pore in a barrier
    • Boehm, R. E. 1999. Steady state permeation rate of homopolymer chain molecules through a pore in a barrier. Macromolecules. 32:7645-7654.
    • (1999) Macromolecules , vol.32 , pp. 7645-7654
    • Boehm, R.E.1
  • 39
    • 0142026527 scopus 로고    scopus 로고
    • Phase transitions within the isolated polymer molecule: Coupling of the PTM transition to the helix-random coil, the collapse, the adsorption, and the equilibrium polymerization transitions
    • DiMarzio, E. A., and J. J. Kasianowicz. 2003. Phase transitions within the isolated polymer molecule: coupling of the PTM transition to the helix-random coil, the collapse, the adsorption, and the equilibrium polymerization transitions. J. Chem. Phys. 119:6378-6387.
    • (2003) J. Chem. Phys , vol.119 , pp. 6378-6387
    • DiMarzio, E.A.1    Kasianowicz, J.J.2
  • 40
    • 0038752648 scopus 로고    scopus 로고
    • Polymer translocation through a long nanopore
    • Slonkina, E., and A. B. Kolomeisky. 2003. Polymer translocation through a long nanopore. J. Chem. Phys. 118:7112-7118.
    • (2003) J. Chem. Phys , vol.118 , pp. 7112-7118
    • Slonkina, E.1    Kolomeisky, A.B.2
  • 41
    • 14844318136 scopus 로고    scopus 로고
    • Nanopore unzipping of individual DNA hairpin molecules
    • Mathé, J., H. Visram, V. Viasnoff, Y. Rabin, and A. Meller. 2004. Nanopore unzipping of individual DNA hairpin molecules. Biophys. J. 87:3205-3212.
    • (2004) Biophys. J , vol.87 , pp. 3205-3212
    • Mathé, J.1    Visram, H.2    Viasnoff, V.3    Rabin, Y.4    Meller, A.5
  • 42
    • 42749107580 scopus 로고    scopus 로고
    • Anomalous dynamics of forced translocation
    • Kantor, Y., and M. Kardar. 2004. Anomalous dynamics of forced translocation. Phys. Rev. E. 69:021806.
    • (2004) Phys. Rev. E , vol.69 , pp. 021806
    • Kantor, Y.1    Kardar, M.2
  • 43
    • 34547305670 scopus 로고    scopus 로고
    • Polymer translocation through a nanopore under a pulling force
    • Huopaniemi, I., K. Luo, T. Ala-Nissila, and S.-C. Ying. 2007. Polymer translocation through a nanopore under a pulling force. Phys Rev. E. 75:061912.
    • (2007) Phys Rev. E , vol.75 , pp. 061912
    • Huopaniemi, I.1    Luo, K.2    Ala-Nissila, T.3    Ying, S.-C.4
  • 44
    • 35348815576 scopus 로고    scopus 로고
    • Panja, D., G. T. Barkema, and R. C. Ball. 2007. Anomalous dynamics of unbiased polymer translocation through a narrow pore. J. Condens. Matter. 19:432202. In press.
    • Panja, D., G. T. Barkema, and R. C. Ball. 2007. Anomalous dynamics of unbiased polymer translocation through a narrow pore. J. Condens. Matter. 19:432202. In press.
  • 45
    • 33646942738 scopus 로고    scopus 로고
    • Passage times for unbiased polymer translocation through a narrow pore
    • Klein Wolterink, J., G. T. Barkema, and D. Panja. 2006. Passage times for unbiased polymer translocation through a narrow pore. Phys. Rev. Lett. 96:208031.
    • (2006) Phys. Rev. Lett , vol.96 , pp. 208031
    • Klein Wolterink, J.1    Barkema, G.T.2    Panja, D.3
  • 46
    • 85031349670 scopus 로고    scopus 로고
    • Panja, D, G. T. Barkema, and R. C. Ball. 2006. Effect of anomalous dynamics on unbiased polymer translocation. E-print arxiv cond-mat/0610671, version 2
    • Panja, D., G. T. Barkema, and R. C. Ball. 2006. Effect of anomalous dynamics on unbiased polymer translocation. E-print arxiv cond-mat/0610671, version 2.
  • 48
    • 15244344859 scopus 로고    scopus 로고
    • Diffusion and exchange of adsorbed polymer studied by Monte Carlo simulations
    • Klein Wolterink, J., G. T. Barkema, and M. A. Cohen Stuart. 2005. Diffusion and exchange of adsorbed polymer studied by Monte Carlo simulations. Macromolecules. 38:2009-2014.
    • (2005) Macromolecules , vol.38 , pp. 2009-2014
    • Klein Wolterink, J.1    Barkema, G.T.2    Cohen Stuart, M.A.3
  • 49
    • 31744432556 scopus 로고    scopus 로고
    • Polymer diffusion in a lattice polymer model with an intrinsic reptation mechanism
    • Klein Wolterink, J., and G. T. Barkema. 2005. Polymer diffusion in a lattice polymer model with an intrinsic reptation mechanism. Mol. Phys. 10:3083-3089.
    • (2005) Mol. Phys , vol.10 , pp. 3083-3089
    • Klein Wolterink, J.1    Barkema, G.T.2


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