The role of atomic inner shell relaxations for photon-induced DNA damage

Radiation and Environmental Biophysics

Volumn 43, Issue 2, 2004, Pages 77-84

  Bernhardt, Philipp ^a   Friedland, Werner ^a   Paretzke, Herwig G ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BROMINE; CALCIUM; CARBON; DNA; IODINE; NITROGEN; OXYGEN; PHOSPHORUS; PLATINUM; POTASSIUM; PYRIDINE DERIVATIVE; SODIUM;

ARTICLE; ATOM; CALCULATION; COMPUTER SIMULATION; DNA DAMAGE; DNA STRAND BREAKAGE; ELECTRON; ENERGY ABSORPTION; IONIZATION; MONTE CARLO METHOD; PHOTON; QUANTITATIVE ANALYSIS; RADIATION INJURY; X IRRADIATION;

EID: 4143100174     PISSN: 0301634X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00411-004-0238-7     Document Type: Article

References (53)

1. Maezawa H, Hieda K, Kobayashi K, Furusawa Y, Mori T, Suzuki K, Ito T (1988) Effects of monoenergetic X-rays with resonance energy of bromine K-absorption edge on bromouracil-labeled E. coli cells. Int J Radiat Biol Relat Stud Phys Chem Med 53:301-308
2. Usami N, Kobayashi K, Maezawa H, Hieda K, Ishizaka S (1991) Biological effects of Auger processes of bromine on yeast cells induced by monochromatic synchrotron X-rays. Int J Radiat Biol 60:757-768
3. Menke H, Kohnlein W, Joksch S, Halpern A (1991) Strand breaks in plasmid DNA, natural and brominated, by low-energy X-rays. Int J Radiat Biol 59:85-96
4. Furusawa Y, Maezawa H, Suzuki K, Yamamoto Y, Kobayashi K, Hieda K (1993) Uracil-DNA glycosylase produces excess lethal damage induced by an Auger cascade in BrdU-labeled bacteriophage T1. Int J Radiat Biol 64:157-164
5. Yamada H, Kobayashi K, Hieda K (1993) Effects of the K-shell X-ray absorption of phosphorus on the scission of the pentadeoxythymidylic acid. Int J Radiat Biol 63:151-159
6. Watanabe M, Suzuki M, Watanabe K, Suzuki K, Usami N, Yokoya A, Kobayashi K (1993) Mutagenic and transforming effects of soft-X-rays with resonance energy of phosphorus K-absorption edge. Int J Radiat Biol 61:161-168
7. Lawrence T, Davis MA, Normolle DP (1995) Effect of bromodeoxyuridine on radiation-induced DNA damage and repair based on DNA fragment size using pulsed-field gel electrophoresis. Radiat Res 144:282-287
8. Shinohara K, Nakano H, Ohara H (1996) Detection of Auger enhancement induced in HeLa cells labeled with iododeoxyuridine and irradiated with 150 kV X-rays-Effects of cysteamine and dimethylsulfoxide. Acta Oncol 35:869-875
9. Hieda K, Hirono T, Azami A et al. (1996) Single- and double-strand breaks in pBR322 plasmid DNA by monochromatic X-rays on and off the K-absorption peak of phosphorus. Int J Radiat Biol 70:437-445
10. Takakura K (1996) Double-strand breaks in DNA induced by the K-shell ionization of calcium atoms. Acta Oncol 35:883-888
11. Yokoya A, Watanabe R, Hara T (1999) Single- and double-strand breaks in solid pBR322 DNA induced by ultrasoft X-rays at photon energies of 388, 435 and 573 eV. J Radiat Res 40:145-158
12. Herve du Penhoat MA, Fayard B et al. (1999) Lethal effect of carbon K-shell photoionizations in Chinese hamster V79 cell nuclei: experimental method and theoretical analysis. Radiat Res 151:649-658
13. LeSech C, Takakura K, Saint-Marc C, Frohlich H, Charlier M, Usami N, Kobayashi K (2000) Strand break induction by photoabsorption in DNA-bound molecules. Radiat Res 153: 454-458
14. LeSech C, Takakura K, Saint-Marc C, Frohlich H, Charlier M, Usami N, Kobayashi K (2001) Enhanced strand break induction of DNA by resonant metal-innershell photoabsorption. Can J Physiol Pharmacol 79:196-200
15. Fayard B, Touati A, Herve du Penhoat MA et al. (2002) Cell inactivation and double-strand breaks: the role of core ionizations, as probed by ultrasoft X-rays. Radiat Res 157:128-140
16. Touati A, Herve du Penhoat MA, Fayard B et al. (2002) Biological effects induced by K photo-ionisation in and near constituent atoms of DNA. Radiat Prot Dosim 99:83-84
17. Goodhead DT, Thacker J, Cox R (1979) Effectiveness of 0.3 keV carbon ultrasoft X-rays for the inactivation and mutation of cultured mammalian cells. Int J Radiat Biol 36:101-114
18. Frankenberg D, Goodhead DT, Frankenberg-Schwager M, Harbich R, Bance DA, Wilkinson RE (1986) Effectiveness of 1.5 keV aluminum K and 0.3 keV carbon K characteristic X-rays at inducing DNA double-strand breaks in yeast cells. Int J Radiat Biol 50:727-741
19. Hill MA, Stevens DL, Stuart Townsend KM, Goodhead DT (2001) Comments on the recently reported low biological effectiveness of ultrasoft X-rays. Radiat Res 155:503-510
20. Frankenberg D, Kühn H, Frankenberg-Schwager M, Lenhard W, Beckonert S (1995) 0.3 keV Carbon K ultrasoft X-rays are four times more effective than γ-rays when inducing oncogenic cell transformation at low doses. Int J Radiat Biol 68:593-601
21. DeLara CM, Hill MA, Jenner TJ, Papworth D, O'Neill P (2001) Dependence of the yield of DNA double-strand breaks in Chinese hamster V79-4 cells on the photon energy of ultrasoft X-rays. Radiat Res 155:440-448
22. Thacker J,Wilkinson RE, Goodhead DT (1986) The induction of chromosome exchange aberrations by carbon ultrasoft X-rays in V79 hamster cells. Int J Radiat Biol 49:645-656
23. Bernhardt Ph, Friedland W, Jacob P, Paretzke HG (2003) Modeling of ultrasoft X-ray-induced damage using structured higher order DNA targets. Int J Mass Spectrom 223-224:579-597
24. Cullen DE, Hubbel JH, Kissel L (1997) EPDL97 The evaluated data library, '97 Version. Lawrence Livermore National Laboratory, UCRL-ID-50400 6
25. Perkins ST, Cullen DE, Chen MH, Hubbel JH, Rathkopf R, Scofield J (1991) Tables and graphs of atomic subshell and relaxation data derived from the LLNL evaluated atomic data library (EADL), Z=1-100. Lawrence Livermore National Laboratory. UCRL-50400 30
26. ICRU (1989) Tissue substitutes in radiation dosimetry and measurement. Report 44. International Commission on Radiation Units and Measurements, Bethesda, MD
27. Chiu TK, Dickerson RE (2000) 1 Å crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J Mol Biol 301:915-945
28. Yuan H, Quintana J, Dickerson RE (1992) Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G. Biochemistry 31:8009-8021
29. Wing RM, Pjura P, Drew HR, Dickerson RE (1984) The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G. EMBO J 3:1201-1206
30. Coste F, Malinge JM, Serre L, Shepard W, Roth M, Leng M, Zelwer C (1999) Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: hydration at the platinated site. Nucleic Acids Res 27: 1837-1846
31. Dingfelder M, Hantke D, Inokuti M, Paretzke HG (1998) Electron inelastic scattering cross sections in liquid water. Radiat Phys Chem 53:1-18
32. Bernhardt Ph, Paretzke HG (2003) Calculation of electron impact ionization cross sections of DNA using the Deutsch-Mark and Binary-Encounter- Bethe formalisms. Int J Mass Spectrom 223-224:599-611
33. Kim YK, Rudd ME (1994) Binary-encounter-dipole model for electron-impact ionization. Phys Rev A50:3954-3967
34. Kim YK, Santos JP, Parente F (2000) Extension of the binary-encounter- dipole model to relativistic incident electrons. Phys Rev A62:052710
35. Frisch Æ, Frisch MJ (1998) Gaussian 98 user's reference. Gaussian, Pittsburgh
36. Binkley JS, Pople JA, Dobosh PA (1974) The calculation of spin-restricted single-determinant wavefunctions. Mol Phys 28:1423-1429
37. Binkley JS, Pople JA, Hehre WJ (1980) Self-consistent molecular orbital methods. XXI. Small split-valence basis sets for first-row elements. J Am Chem Soc 102:939-947
38. Pomplun E, Booz J, Charlton DE (1987) A Monte Carlo simulation of Auger cascades. Radiat Res 111:533-552
39. Pomplun E (2000) Auger electron spectra. Acta Oncol 39:673-679
40. Pomplun E (1991) A new DNA target model for track structure calculations and its first application to 1-125 Auger electrons. Int J Radiat Biol 59:625-642
41. Michalik V, Begusova M (1994) Target model of nucleosome particle for track structure calculations and DNA damage modelling. Int J Radiat Biol 66:267-277
42. Friedland W, Jacob P, Paretzke HP, Merzagora M, Ottolenghi A (1999) Simulation of DNA fragments distributions after irradiation with photons. Radiat Environ Biophys 38:39-47
43. Roots R, Okada S (1975) Estimation of life times and diffusion distances of radicals involved in X-ray-induced DNA strand breaks or killing of mammalian cells. Radiat Res 64:306-320
44. Prise KM, Ahnström G, Belli M et al. (1998) A review of DSB induction data for varying quality radiations. Int J Radiat Biol 74:173-184
45. 125I. Radiat Res 87:10-23
46. Humm JL (1984) The analysis of Auger electrons released following the decay of radioisotopes and photoelectric interactions and their contribution to energy deposition. KFA Report JUL-1932, pp 100-109
47. Terrissol M, Vrigneaud JM (2001) Modelling ultrasoft X-rays effects on DNA. Proceedings of Lisbon MC 2000 Conference, Springer
48. Prise KM, Folkhard M, Davies S, Michael BD (1989) Measurements of DNA damage and cell killing in Chinese hamster V79 cells irradiated with aluminum characteristic ultrasoft X-rays. Radiat Res 117:489-499
49. Hill MA, Veccia MD, Townsend KMS, Goodhead DT (1998) Production and dosimetry of copper L ultrasoft X-rays for biological and biochemical investigations. Phys Med Biol 43:351-363
50. Goodhead DT, Thacker J, Cox R (1981) Is selective absorption of ultrasoft x-rays biologically important in mammalian cells? Phys Med Biol 26:1115-1127
51. Schmid E, Regulla D, Kramer H-M, Harder D (2002) The effect of 29 kV X-rays on the dose response of chromosome aberrations abeff ations in human lymphocytes. Radiat Res 158:771-777
52. Krisch RE, Sauri CJ (1975) Further studies of DNA damage and lethality from the decay of iodine-125 in bacteriophages. Int J Radiat Biol 27:553-560
53. Landau LD, Lifshitz EM (1985) Quantum mechanics. Pergamon Press, Oxford