-
1
-
-
0026345750
-
Folding of chymotrypsin inhibitor-2. 1. Evidence for a two-state transition
-
Jackson S.E., Fersht A.R. Folding of chymotrypsin inhibitor-2. 1. Evidence for a two-state transition. Biochemistry. 30:1991;10428-10435
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
2
-
-
0032734515
-
Experiment and theory highlight role of native state topology in SH3 folding
-
Riddle D.S., Grantcharova V.P., Santiago J.V., Alm E., Ruczinski I., Baker D. Experiment and theory highlight role of native state topology in SH3 folding. Nature Struct. Biol. 11:1999;1016-1024
-
(1999)
Nature Struct. Biol.
, vol.11
, pp. 1016-1024
-
-
Riddle, D.S.1
Grantcharova, V.P.2
Santiago, J.V.3
Alm, E.4
Ruczinski, I.5
Baker, D.6
-
3
-
-
0034685619
-
A breakdown of symmetry in the folding transition state of protein L
-
Kim D.E., Fisher C., Baker D. A breakdown of symmetry in the folding transition state of protein L. J. Mol. Biol. 298:2000;971-984
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 971-984
-
-
Kim, D.E.1
Fisher, C.2
Baker, D.3
-
4
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson S.E. How do small single-domain proteins fold? Fold. Des. 3:1998;R81-R91
-
(1998)
Fold. Des.
, vol.3
-
-
Jackson, S.E.1
-
5
-
-
0034622508
-
Multistate equilibrium unfolding of Escherichia coli dihydrofolate reductase: Thermodynamic and spectroscopic description of the native, intermediate, and unfolded ensembles
-
Ionescu R.M., Smith V.F., O'Neill J.C. Jr, Matthews C.R. Multistate equilibrium unfolding of Escherichia coli dihydrofolate reductase: thermodynamic and spectroscopic description of the native, intermediate, and unfolded ensembles. Biochemistry. 39:2000;9540-9550
-
(2000)
Biochemistry
, vol.39
, pp. 9540-9550
-
-
Ionescu, R.M.1
Smith, V.F.2
O'neill Jr., J.C.3
Matthews, C.R.4
-
6
-
-
0029025915
-
Kinetic traps in lysozyme folding
-
Kiefhaber T. Kinetic traps in lysozyme folding. Proc. Natl Acad. Sci. USA. 92:1995;9029-9033
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9029-9033
-
-
Kiefhaber, T.1
-
7
-
-
0030961780
-
The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules detected under native conditions
-
Raschke T.M., Marqusee S. The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules detected under native conditions. Nature Struct. Biol. 4:1997;298-304
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 298-304
-
-
Raschke, T.M.1
Marqusee, S.2
-
8
-
-
0037058950
-
Sequential vs. parallel protein-folding mechanisms: Experimental tests for complex folding reactions
-
Wallace L.A., Matthews C.R. Sequential vs. parallel protein-folding mechanisms: experimental tests for complex folding reactions. Biophys. Chem. 101:2002;113-131
-
(2002)
Biophys. Chem.
, vol.101
, pp. 113-131
-
-
Wallace, L.A.1
Matthews, C.R.2
-
9
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N., Orengo C.A., Thornton J.M. One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J. Mol. Biol. 321:2002;741-765
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
10
-
-
0032835301
-
Barrel structures in proteins: Automatic identification and classification including a sequence analysis of TIM barrels
-
Nagano N., Hutchinson E.G., Thornton J.M. Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels. Protein Sci. 8:1999;2072-2084
-
(1999)
Protein Sci.
, vol.8
, pp. 2072-2084
-
-
Nagano, N.1
Hutchinson, E.G.2
Thornton, J.M.3
-
11
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo C.A., Michie A.D., Jones S., Jones D.T., Swindells M.B., Thornton J.M. CATH - a hierarchic classification of protein domain structures. Structure. 5:1997;1093-1108
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
12
-
-
7344268579
-
An analysis of the amino acid clustering pattern in (alpha/beta)8 barrel proteins
-
Selvaraj S., Gromiha M.M. An analysis of the amino acid clustering pattern in (alpha/beta)8 barrel proteins. J. Protein Chem. 17:1998;407-415
-
(1998)
J. Protein Chem.
, vol.17
, pp. 407-415
-
-
Selvaraj, S.1
Gromiha, M.M.2
-
13
-
-
0033579862
-
Folding mechanism of the alpha-subunit of tryptophan synthase, an alpha/beta barrel protein: Global analysis highlights the interconversion of multiple native, intermediate, and unfolded forms through parallel channels
-
Bilsel O., Zitzewitz J.A., Bowers K.E., Matthews C.R. Folding mechanism of the alpha-subunit of tryptophan synthase, an alpha/beta barrel protein: global analysis highlights the interconversion of multiple native, intermediate, and unfolded forms through parallel channels. Biochemistry. 38:1999;1018-1029
-
(1999)
Biochemistry
, vol.38
, pp. 1018-1029
-
-
Bilsel, O.1
Zitzewitz, J.A.2
Bowers, K.E.3
Matthews, C.R.4
-
14
-
-
0032813944
-
The progressive development of structure and stability during the equilibrium folding of the alpha subunit of tryptophan synthase from Escherichia coli
-
Gualfetti P.J., Bilsel O., Matthews C.R. The progressive development of structure and stability during the equilibrium folding of the alpha subunit of tryptophan synthase from Escherichia coli. Protein Sci. 8:1999;1623-1635
-
(1999)
Protein Sci.
, vol.8
, pp. 1623-1635
-
-
Gualfetti, P.J.1
Bilsel, O.2
Matthews, C.R.3
-
15
-
-
0027770910
-
Detection of transient protein folding populations by mass spectrometry
-
Miranker A., Robinson C.V., Radford S.E., Aplin R.T., Dobson C.M. Detection of transient protein folding populations by mass spectrometry. Science. 262:1993;896-900
-
(1993)
Science
, vol.262
, pp. 896-900
-
-
Miranker, A.1
Robinson, C.V.2
Radford, S.E.3
Aplin, R.T.4
Dobson, C.M.5
-
16
-
-
0242321015
-
Role of the B helix in early folding events in apomyoglobin: Evidence from site-directed mutagenesis for native-like long range interactions
-
Nishimura C., Wright P.E., Dyson H.J. Role of the B helix in early folding events in apomyoglobin: evidence from site-directed mutagenesis for native-like long range interactions. J. Mol. Biol. 334:2003;293-307
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 293-307
-
-
Nishimura, C.1
Wright, P.E.2
Dyson, H.J.3
-
17
-
-
0037614975
-
Quaternary structure of aldolase leads to differences in its folding and unfolding intermediates
-
Pan H., Smith D.L. Quaternary structure of aldolase leads to differences in its folding and unfolding intermediates. Biochemistry. 42:2003;5713-5721
-
(2003)
Biochemistry
, vol.42
, pp. 5713-5721
-
-
Pan, H.1
Smith, D.L.2
-
18
-
-
0029897362
-
Thermal-induced unfolding domains in aldolase identified by amide hydrogen exchange and mass spectrometry
-
Zhang Z., Smith D.L. Thermal-induced unfolding domains in aldolase identified by amide hydrogen exchange and mass spectrometry. Protein Sci. 5:1996;1282-1289
-
(1996)
Protein Sci.
, vol.5
, pp. 1282-1289
-
-
Zhang, Z.1
Smith, D.L.2
-
19
-
-
0022426014
-
Protein hydrogen exchange studied by the fragment separation method
-
Englander J.J., Rogero J.R., Englander S.W. Protein hydrogen exchange studied by the fragment separation method. Anal. Biochem. 147:1985;234-244
-
(1985)
Anal. Biochem.
, vol.147
, pp. 234-244
-
-
Englander, J.J.1
Rogero, J.R.2
Englander, S.W.3
-
21
-
-
0027121112
-
Determination of amide hydrogen exchange rates in peptides by mass spectrometry
-
Thévenon-Emeric G., Kozlowski J., Zhang Z., Smith D.L. Determination of amide hydrogen exchange rates in peptides by mass spectrometry. Anal. Chem. 64:1992;2456-2458
-
(1992)
Anal. Chem.
, vol.64
, pp. 2456-2458
-
-
Thévenon-Emeric, G.1
Kozlowski, J.2
Zhang, Z.3
Smith, D.L.4
-
22
-
-
0033572543
-
Rate and equilibrium constants for protein unfolding and refolding determined by hydrogen exchange-mass spectrometry
-
Deng Y., Smith D.L. Rate and equilibrium constants for protein unfolding and refolding determined by hydrogen exchange-mass spectrometry. Anal. Biochem. 276:1999;150-160
-
(1999)
Anal. Biochem.
, vol.276
, pp. 150-160
-
-
Deng, Y.1
Smith, D.L.2
-
23
-
-
0032485916
-
Identification of unfolding domains in large proteins by their unfolding rates
-
Deng Y., Smith D.L. Identification of unfolding domains in large proteins by their unfolding rates. Biochemistry. 37:1998;6256-6262
-
(1998)
Biochemistry
, vol.37
, pp. 6256-6262
-
-
Deng, Y.1
Smith, D.L.2
-
24
-
-
0027772180
-
Urea-induced unfolding of the alpha subunit of tryptophan synthase: One- dimensional proton NMR evidence for residual structure near histidine- 92 at high denaturant concentration
-
Saab-Rincon G., Froebe C.L., Matthews C.R. Urea-induced unfolding of the alpha subunit of tryptophan synthase: one- dimensional proton NMR evidence for residual structure near histidine- 92 at high denaturant concentration. Biochemistry. 32:1993;13981-13990
-
(1993)
Biochemistry
, vol.32
, pp. 13981-13990
-
-
Saab-Rincon, G.1
Froebe, C.L.2
Matthews, C.R.3
-
25
-
-
0030070225
-
Mutagenic and thermodynamic analyses of residual structure in the alpha subunit of tryptophan synthase
-
Saab-Rincon G., Gualfetti P.J., Matthews C.R. Mutagenic and thermodynamic analyses of residual structure in the alpha subunit of tryptophan synthase. Biochemistry. 35:1995;1988-1994
-
(1995)
Biochemistry
, vol.35
, pp. 1988-1994
-
-
Saab-Rincon, G.1
Gualfetti, P.J.2
Matthews, C.R.3
-
26
-
-
0033060003
-
Identifying the structural boundaries of independent folding domains in the alpha subunit of tryptophan synthase, a beta/alpha barrel protein
-
Zitzewitz J.A., Gualfetti P.J., Perkons I.A., Wasta S.A., Matthews C.R. Identifying the structural boundaries of independent folding domains in the alpha subunit of tryptophan synthase, a beta/alpha barrel protein. Protein Sci. 8:1999;1200-1209
-
(1999)
Protein Sci.
, vol.8
, pp. 1200-1209
-
-
Zitzewitz, J.A.1
Gualfetti, P.J.2
Perkons, I.A.3
Wasta, S.A.4
Matthews, C.R.5
-
27
-
-
0018805386
-
An active proteolytic derivative of the a subunit of tryptophan synthase. Identification of the site of cleavage and characterization of the fragments
-
Higgins W., Fairwell T., Miles E.W. An active proteolytic derivative of the a subunit of tryptophan synthase. Identification of the site of cleavage and characterization of the fragments. Biochemistry. 18:1979;4827-4835
-
(1979)
Biochemistry
, vol.18
, pp. 4827-4835
-
-
Higgins, W.1
Fairwell, T.2
Miles, E.W.3
-
28
-
-
0036965922
-
A cis-prolyl peptide bond isomerization dominates the folding of the alpha subunit of Trp synthase, a TIM barrel protein
-
Wu Y., Matthews C.R. A cis-prolyl peptide bond isomerization dominates the folding of the alpha subunit of Trp synthase, a TIM barrel protein. J. Mol. Biol. 322:2002;7-13
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 7-13
-
-
Wu, Y.1
Matthews, C.R.2
-
29
-
-
0036404928
-
Parallel channels and rate-limiting steps in complex protein folding reactions: Prolyl isomerization and the alpha subunit of trp synthase, a TIM barrel protein
-
Wu Y., Matthews C.R. Parallel channels and rate-limiting steps in complex protein folding reactions: prolyl isomerization and the alpha subunit of trp synthase, a TIM barrel protein. J. Mol. Biol. 323:2002;309-325
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 309-325
-
-
Wu, Y.1
Matthews, C.R.2
-
30
-
-
0038690118
-
Proline replacements and the simplication of the complex, parallel channel folding mechanism for the alpha subunit of tryptophan synthase, a TIM barrel protein
-
Wu Y., Matthews C.R. Proline replacements and the simplication of the complex, parallel channel folding mechanism for the alpha subunit of tryptophan synthase, a TIM barrel protein. J. Mol. Biol. 330:2003;1131-1144
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 1131-1144
-
-
Wu, Y.1
Matthews, C.R.2
-
31
-
-
0037540410
-
Non-sequential unfolding of the alpha/beta barrel protein indole-3- glycerol-phosphate synthase
-
Sanchez del Pino M.M., Fersht A.R. Non-sequential unfolding of the alpha/beta barrel protein indole-3- glycerol-phosphate synthase. Biochemistry. 36:1997;5560-5565
-
(1997)
Biochemistry
, vol.36
, pp. 5560-5565
-
-
Sanchez Del Pino, M.M.1
Fersht, A.R.2
-
32
-
-
0030906459
-
Stability of a thermophilic TIM-barrel enzyme: Indole-3-glycerol phosphate synthase from the thermophilic archaeon Sulfolobus solfataricus
-
Andreotti G., Cubellis M.V., Palo M.D., Fessas D., Sannia G., Marino G. Stability of a thermophilic TIM-barrel enzyme: indole-3-glycerol phosphate synthase from the thermophilic archaeon Sulfolobus solfataricus. Biochem. J. 323:1997;259-264
-
(1997)
Biochem. J.
, vol.323
, pp. 259-264
-
-
Andreotti, G.1
Cubellis, M.V.2
Palo, M.D.3
Fessas, D.4
Sannia, G.5
Marino, G.6
-
33
-
-
0026685018
-
Stable substructures of eightfold β/α-barrel proteins: Fragment complementation of phosphoribosylanthranilate isomerase
-
Eder J., Kirschner K. Stable substructures of eightfold β/α-barrel proteins: fragment complementation of phosphoribosylanthranilate isomerase. Biochemistry. 31:1992;3617-3625
-
(1992)
Biochemistry
, vol.31
, pp. 3617-3625
-
-
Eder, J.1
Kirschner, K.2
-
34
-
-
0028287276
-
Detection of an intermediate in the folding of the (βα)8- barrel N-(5′-phosphoribosyl) anthranilate isomerase from E. coli
-
Jasanoff A., Davis B., Fersht A.R. Detection of an intermediate in the folding of the (βα)8-barrel N-(5′-phosphoribosyl) anthranilate isomerase from E. coli. Biochemistry. 33:1994;6350-6355
-
(1994)
Biochemistry
, vol.33
, pp. 6350-6355
-
-
Jasanoff, A.1
Davis, B.2
Fersht, A.R.3
-
36
-
-
0034746909
-
Dissection of a (betaalpha)8-barrel enzyme into two folded halves
-
Hocker B., Beismann-Driemeyer S., Hettwer S., Lustig A., Sterner R. Dissection of a (betaalpha)8-barrel enzyme into two folded halves. Nature Struct. Biol. 8:2001;32-36
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 32-36
-
-
Hocker, B.1
Beismann-Driemeyer, S.2
Hettwer, S.3
Lustig, A.4
Sterner, R.5
-
37
-
-
0037073476
-
The equilibrium unfolding pathway of a (beta/alpha)8 barrel
-
Silverman J.A., Harbury P.B. The equilibrium unfolding pathway of a (beta/alpha)8 barrel. J. Mol. Biol. 324:2002;1031-1040
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 1031-1040
-
-
Silverman, J.A.1
Harbury, P.B.2
-
38
-
-
0016768876
-
The tryptophan synthase from Escherichia coli. An improved purification procedure for the alpha-subunit and binding studies with substrate analogues
-
Kirschner K., Wiskocil R.L., Foehn M., Rezeau L. The tryptophan synthase from Escherichia coli. An improved purification procedure for the alpha-subunit and binding studies with substrate analogues. Eur. J. Biochem. 60:1975;513-523
-
(1975)
Eur. J. Biochem.
, vol.60
, pp. 513-523
-
-
Kirschner, K.1
Wiskocil, R.L.2
Foehn, M.3
Rezeau, L.4
-
40
-
-
0027529263
-
Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation
-
Zhang Z., Smith D.L. Determination of amide hydrogen exchange by mass spectrometry: A new tool for protein structure elucidation. Protein Sci. 2:1993;522-531
-
(1993)
Protein Sci.
, vol.2
, pp. 522-531
-
-
Zhang, Z.1
Smith, D.L.2
-
41
-
-
0036463721
-
Hydrogen exchange-mass spectrometry: Optimization of digestion conditions
-
Wang L., Pan H., Smith D.L. Hydrogen exchange-mass spectrometry: optimization of digestion conditions. Mol. Cell Proteomics. 1:2002;132-138
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 132-138
-
-
Wang, L.1
Pan, H.2
Smith, D.L.3
|