Predicting NMR relaxation rates in anisotropically tumbling proteins through networks of coupled rotators

ChemPhysChem

Volumn 9, Issue 4, 2008, Pages 625-633

  Nodet, Gabrielle ^a,c   Abergel, Daniel ^a   Bodenhausen, Geoffrey ^a,b  

^a ECOLE NORMALE SUPÉRIEURE   (France)

^b EPFL   (Switzerland)

^c INSTITUT DE BIOLOGIE STRUCTURALE   (France)

Author keywords

Biophysics; Coupled rotators; NMR spectroscopy; Protein dynamics; Protein folding

Indexed keywords

ANISOTROPY; BIOPHYSICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHOTOMAPPING; PROTEIN FOLDING; SPECTRAL DENSITY;

COUPLED ROTATORS; NMR RELAXATION RATES; ON DYNAMICS; PROTEIN DYNAMICS; RELAXATION RATES; ROTATIONAL DIFFUSION; THREE-DIMENSIONAL STRUCTURE; TIME-SCALES;

PROTEINS;

EID: 41149168620     PISSN: 14394235     EISSN: 14397641     Source Type: Journal    
DOI: 10.1002/cphc.200700732     Document Type: Article

References (25)

1. D. Abergel, G. Bodenhausen, J. Chem. Phys. 2005, 123, 204901.
2. A. Dhulesia, D. Abergel, G. Bodenhausen, J. Am. Chem. Soc. 2007, 129, 4998-5006.
3. G. Nodet, G. Bodenhausen, D. Abergel, C. R. Chimie, DOI: 10.1016/ j.crci.2007.08.008.
4. D. Abergel, G. Bodenhausen, J. Chem. Phys. 2004, 121, 761.
5. A. Abragam, Principles of Nuclear Magnetism, Clarendon, Oxford, 1961.
6. K. Loth, P. Pelupessy, G. Bodenhausen, J. Am. Chem. Soc. 2005, 127, 6062.
7. J. M. Schurr, H. P. Babcock, B. S. Fujimoto, J. Magn. Reson. Ser. B 1994, 105, 211-224.
8. D. Korzhnev, M. Billeter, A. Arseniev, V. Orekhov, Prog. Nucl. Magn. Reson. Spectrosc. 2001, 38, 197-266.
9. V. A. Daragan, K. H. Mayo, J. Phys. Chem. B 1999, 103, 6829.
10. P. Dosset, D. Marion, M. Blackledge, Copyright 1999, Institut de Biologie Structurale J. P. EBEL CEA-CNRS, Laboratoire de Resonance Magnetique nucleaire, Grenoble, 2000.
11. Scilab, a free scientific software package.
12. J. W. Peng, G. Wagner, J. Magn. Reson. 1992, 98, 308-332.
13. J. W. Peng, G. Wagner, Biochemistry 1992, 31, 8571-8586.
14. A. Farrow, O. Zhang, J. Forman-Kay, L. E. Kay, Biochemistry 1995, 34, 868-878.
15. J.-F. Lefèvre, K. T. Dayie, J. W. Peng, G. Wagner, Biochemistry 1996, 35, 2674-2686.
16. A. Farrow, O. Zhang, A. Szabo, D. A. Torchia, L. E. Kay, J. Biomol. NMR 1995, 6, 153-162.
17. M. Buck, J. Boyd, C. Redfield, D. MacKenzie, D. Jeenes, D. Archer, C. Dobson, Biochemistry 1995, 34, 4041-4055.
18. C. Redfield, J. Boyd, L. J. Smith, R. Smith, C. Dobson, Biochemistry 1992, 31, 10431-10437.
19. H. Schwalbe, S. B. Grimshaw, A. Spencer, M. Buck, J. Boyd, C. M. Dobson, C. Redfield, L. J. Smith, Protein Sci. 2001, 10, 677-688.
20. T. Müller, T. Dieckmann, W. Sebald, H. Oschkinat, J. Mol. Biol. 1994, 237, 423-436.
21. W. H. Press, B. P. Flannery, S. Teukolsky, W. T. Vetterling. Numerical Recipes, Cambridge University Press, Cambridge, 1989.
22. M. L. Tillet, M. Blackledge, J. P. Derrick, L.-Y. Lian, T. J. Norwood, Protein Sci. 2000, 9, 1210-1216.
23. W. D. Derrick, J. Mol. Biol. 1994, 243, 906-918.
24. G. Lipari, A. Szabo, J. Am. Chem. Soc. 1982, 104, 4546.
25. G. Lipari, A. Szabo, J. Am. Chem. Soc. 1982, 104, 4559.