Inheritance of 12 microsatellite loci in Oncorhynchus mykiss

Journal of Heredity

Volumn 90, Issue 5, 1999, Pages 529-536

  Ardren, William R ^a,c   Borer, S ^a   Thrower, F ^b   Joyce, J E ^b   Kapuscinski, A R ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b NATIONAL MARINE FISHERIES SERVICE   (United States)

^c LUTHER COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; AUTOSOME; GENE FREQUENCY; GENE LOCATION; GENETIC LINKAGE; HETEROZYGOSITY; INHERITANCE; MICROSATELLITE INSTABILITY; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; RAINBOW TROUT; SPECIES DIFFERENCE;

MYKISS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 0032699305     PISSN: 00221503     EISSN: None     Source Type: Journal    
DOI: 10.1093/jhered/90.5.529     Document Type: Article

References (59)

1. Allendorf FW and Danzmann RG, 1997. Secondary tetrasomic segregation of MDH-B and preferential pairing of homologues in rainbow trout. Genetics 145:1083-1092.
2. Allendorf FW and Waples RS, 1996. Conservation and genetics of salmonid fishes. In: Conservation genetics: case histories from nature (Avise JC and Hamrick JL. eds). New York: Chapman & Hall; 238-280.
3. Allendorf FW, and Thorgaard GH, 1984. Tetraploidy and the evolution of salmonid fishes. In: Evolutionary genetics of fishes (Turner BJ, ed). New York: Plenum Press; 1-53.
4. Allendorf FW, Utter FM, and May BP, 1975. Gene duplication within the family Salmonidae. 2. Detection and determination of the genotypic control of duplicated loci through the inheritance studies and the examination of populations. In: Isozymes IV: genetics and evolution (Markert CL, ed). New York: Academic Press; 415-431.
5. Angers B, Bernatchez L, Angers A, and Desgroseillers L, 1995. Specific microsatellite loci for brook char reveal strong population subdivision on a microgeographic scale. J Fish Biol 47(suppl A):177-185.
6. Bentzen P, Taggart CT, Ruzzante DE, and Cook D, 1996. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic. Can J Fish Aqual Sci 53:2706-2721.
7. Botstein D, White RL, Skolnick M, and Davis RW, 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314-331.
8. Brookfield JFY, 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5 453-455.
9. Callen DF, Thimpson AD, Shen Y, Phillips HA, Richards RI, Mulley JC, and Sutherland GR, 1993. Incidence and origin of "null" alleles in the (AC)n microsatellite markers. Am J Hum Genet 52:922-927.
10. Craighead L, Paetkau D, Reynolds HV, Vyse ER, and Strobeck C, 1995. Microsatellite analysis of paternity and reproduction in arctic grizzly bears. J Hered 86: 255-261.
11. Dallas JF, Dod B, Boursot P, Prager EM, and Bonhomme F, 1995. Population subdivision and gene flow in mice. Mol Ecol 4:311-320.
12. Doyle RW, Herbinger C, Taggart CT, Lochmann S, 1995. Use of DNA microsatellite polymorphism to analyze genetic correlations between hatchery and natural fitness. Am Fish Soc Symp 15:205-211.
13. Estoup A, Gharbi K, SanCristobal M, Chevalet C, Haffray P, and Guyomard R, 1998. Parentage assignment using microsatellites in turbot (Scophthalmus maximus) and rainbow trout (Oncorhynchus mykiss) hatchery populations. Can J Fish Aquat Sci 55:715-723.
14. Estoup A, Presa P, Kreig F, Vaiman D, and Guyomard R, 1993. (CT)n and (GT)n microsatellites: a new class of genetic markers for Salmon trutta L. (brown trout). Heredity 71:488-496.
15. Estoup A, Tailliez C, Cornuet J, and Solignac, M, 1995. Size homoplasy and mutational processes of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestris (Apidae). Mol Biol Evol 12:1074-1084.
16. 2? Can J Fish Aquat Sci 37:1149-1159.
17. Goldstein DB and Pollack DD, 1997. Launching microsatellites: a review of the mutation processes and methods of phylogenetic inference. J Hered 88:335-342.
18. Herbinger CM, Doyle RW, Pitman ER, Paquet D, Mesa KA, Morris DB, Wright JM, and Cook D, 1996. DNA fingerprint based analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout. Aquaculture 137:245-256.
19. Jackson TR, Ferguson MM, Danzmann RG, Fishback AG, Ihssen PE, O'Connell M, and Crease TJ, 1998. Identification of two QTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity 80:143-151.
20. Jarne P and Lagoda PJL, 1996. Microsatellites, from molecules to populations and back. Trends Ecol Evol 11:424-429.
21. Johnson KR, Wright JR, and May B, 1987. Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics 116:579-591.
22. Jones AG, Stockwell CA, Walker D, and Avise JC, 1998. The molecular basis of a microsatellite null allele from the white sands pupfish. J Hered. 89:339-342.
23. Lessios HA, 1992. Testing electrophoretic data for agreement with Hardy-Weinberg expectations. Mar Biol 112:517-523.
24. May B and Johnson KR, 1990. Composite linkage map of salmonid fishes (Salvelinus, Salmo, Oncorhynchus). In: Genetic maps - linkage maps of complex genomes (O'Brien SJ. ed). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press; 4.151-4.159.
25. May B, Krueger CC, and Kincaid HL, 1997. Genetic variation at microsatellite loci in sturgeon: primer sequence homology in Acipenser and Scaphirhynchus. Can J Fish Aquat Sci 54:1542-1547.
26. May BJE, Wright JR, and Johnson KR, 1982. Joint segregation of biochemical loci in Salmonidae. III. Linkage associations in Salmonidae including data from rainbow trout (Salmo gairdneri). Biochem Genet 20:29-40.
27. McConnell SK, O'Reilly P, Hamilton L, Wright JM, and Bentzen P, 1995. Polymorphic microsatellite loci from Atlantic salmon (Salmo salar): genetic differentiation of North American and European populations. Can J Fish Aquat Sci 52:1863-1872.
28. Miller LM and Kapuscinski AR, 1996. Microsatellite DNA markers reveal new levels of genetic variation in northern pike. Trans Am Fish Soc 125:971-977.
29. Moritz C, Lavery S, and Slade R, 1995. Using allele frequency and phylogeny to define units for conservation and management. In: Evolution and the aquatic ecosystem: defining unique units in population conservation (Nielsen JL, ed). Am Fish Soc Symp 17:249-262.
30. Morris DB, Richard KR, and Wright J, 1996. Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic study of salmonids. Can J Fish Aquat Sci 53:120-126.
31. Nielsen JL, Gan CA, Wright JM, Morris DB, and Thomas WK, 1994. Biogeographic distributions of mitochondrial and nuclear markers for southern steelhead. Mol Mar Biol Biotechnol 3:281-293.
32. Novy RG and Vorsa N, 1996. Evidence for RAPD heteroduplex formation in cranberry: implications for pedigree and genetic-relatedness studies and a source of co-dominate RAPD markers. Theor Appl Genet 92:840-849.
33. O'Connell M, Danzmann RG, Cornuet JM, Wright JM, and Ferguson MM, 1997. Differentiation of rainbow trout populations in Lake Ontario and the evaluation of the stepwise mutation and infinite allele mutation models using microsatellite variability. Can J Fish Aquat Sci 54:1391-1399.
34. Ohno S and Atkin NB, 1966. Comparative DNA values and chromosome complements of eight species of fishes. Chromosoma 18:455-466.
35. O'Reilly PT, Hamilton LC, McConnell SK, and Wright JM, 1996. Rapid detection of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Can J Fish Aquat Sci 53: 2292-2298.
36. Paetkau D and Strobeck C, 1995. The molecular basis and evolutionary history of a null allele in bears. Mol Ecol 4:519-520.
37. Pemberton JM, Slate J, Bancroft DR, and Barrett JA, 1995. Non-amplifying alleles at microsatellite loci: a caution for parentage and population studies. Mol Ecol 4:249-252.
38. Queller DC, Strassmann JE, and Hughes CR, 1993. Microsatellites and kinship. Treads Ecol Evol 8:285-288.
39. Rivers PJ and Ardren WR, 1998. The value of archives. Fisheries 23(5):6-9.
40. Scribner KT, Gust JR, and Fields RL, 1996. Isolation and characterization of novel microsatellite loci: cross species amplification and population genetic applications. Can J Fish Aquat Sci 53:685-693.
41. Small MP, Beacham RE, Withler RE, and Nelson RJ, 1998. Discriminating coho salmon (Oncorhynchus kisutch) populations within the Fraser River, British Columbia, using microsatellite DNA markers. Mol Ecol 7: 141-155.
42. Spruell P, Pilgrim KL, Greene BA, Habicht C, Knudsen KL, Lindner KR, Sage GK, Seeb JE, and Allendorf FW, 1999. Inheritance of nuclear DNA markers in gynogenetic haploid pink salmon. J Hered 90:289-296.
43. Stahl G and Ryman N, 1982. Simple Mendelian inheritance at a locus coding for α-glycerophosphate dehydrogenase in brown trout (Salmo trutta). Hereditas 96: 313-315.
44. Thorgaard GH, 1983. Chromosomal differences among rainbow trout populations. Copeia 1983:650-662.
45. Utter F and Ryman N, 1993. Genetic markers and mixed stock fisheries. Fisheries 18(8):11-21.
46. Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P, Wagner GP, Bartels J, Murtha M, and Pendleton J, 1994. Surveys of gene families using polymerase chain reaction PCR selection and PCR drift. Syst Biol 43:250-261.
47. Waples RS, 1995. Evolutionary significant units and the conservation of biological diversity under the Endangered Species Act. In: Evolution and the aquatic ecosystem: defining unique units in population conservation (Nielsen JL, ed). Am Fish Soc Symp 17:8-27.
48. Waples RS, 1991. Genetic methods for estimating the effective population size of cetacean populations. Rep Int Whal Commn 13:279-300.
49. Waples RS, 1989. A generalized method for estimating population size from temporal changes in allele frequency. Genetics 121:379-391.
50. Weissenbach J, Gayapay G, Dib C, Vignal A, Morisette J, Millasseau P, Vaysseix G, and Lathrop M, 1992. A second generation linkage map of the human genome. Nature 359:794-801.
51. Wenburg JK, Olsen JB, and Bentzen P, 1996. Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss). Mol Mar Biol Biotechnol 5:273-283.
52. White MB, Carvalho M, Derse D, O'Brien SJ, and Dean M, 1992. Detecting single-base substitutions as heteroduplex polymorphisms. Genomics 12:301-306.
53. Wilkin DJ, Koprivnikar KE, and Cohn DH, 1993. Heteroduplex analysis can increase the informativeness of PCR-amplified VNTR markers: application using a marker tightly linked to the COL2A1 gene. Genomics 15:372-375.
54. Williams RN, Shiozawa DK, Carter JE, and Leary RF, 1996. Genetic detection of putative hybridization between native and introduced rainbow trout populations in the upper Snake River. Trans Am Fish Soc 125:387-401.
55. Wright JE, Johnson KR, Hollister A, and May B, 1983. Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes. In: Isozymes: current topics in biological and medical research (Rattazzi MC, Scandalios JG, and Whitt GS, eds). New York: Alan R. Liss; 239-260.
56. Young WP, Wheeler PA, Coryell VH, Keim P, and Thorgaard GH, 1998. A detailed linkage map rainbow trout produced using doubled haploids. Genetics 148(2):839-850.
57. Zanetto A, Kremer A, Muller-Starck G, and Hattemer HH, 1996. Inheritance of isozymes in pedunculate oak (Quercus robur L). J Hered 87:364-370.
58. Zar JH, 1984. Biostatistical analysis, 2nd ed. Englewood Cliffs, New Jersey: Prentice Hall.
59. Zhang D and Hewitt GM, 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol Evol 11:247-251.