Microsatellite-based characterization of the Castanea sativa cultivar heritage of southern Switzerland

Genome

Volumn 50, Issue 12, 2007, Pages 1089-1103

  Gobbin, Davide ^a,b   Hohl, Leandro ^a   Conza, Lisa ^a   Jermini, Mauro ^c   Gessler, Cesare ^a,b   Conedera, Marco ^d  

^a ETH ZURICH   (Switzerland)

^b RESEARCH AND INNOVATION CENTRE   (Italy)

^c Swiss Federal Agricultural Research Station Agroscope Cadenazzo   (Switzerland)

^d SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

Author keywords

Clonal lineages; Cultivar identification; European chestnut; Homonymy; Marroni; Synonymy

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; CLASSIFICATION; FAGACEAE; GENE FREQUENCY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GENOTYPE; NUT; PHYLOGENY; SWITZERLAND;

ALLELES; FAGACEAE; GENE FREQUENCY; GENETIC MARKERS; GENOTYPE; MICROSATELLITE REPEATS; NUTS; PHYLOGENY; POLYMORPHISM, GENETIC; SWITZERLAND; VARIATION (GENETICS);

EID: 40949152924     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G07-086     Document Type: Article

References (53)

1. Aldrich, J., and Cullis, C.A. 1993. CTAB DNA extraction from plant tissues. Plant Mol. Biol. Rep. 11: 128-141.
2. Altschul, S.F., Madden, T.L., Schaer, A.A., Zhang, J., Zhang, Z., and Miller, W. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. 10.1093/nar/25.17. 3389 9254694
3. Barreneche, T., Casasoli, M., Russell, K., Akkak, A., Meddour, H., Plomion, C., Villani, F., and Kremer, A. 2004. Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theor. Appl. Genet. 108: 558-566. 10.1007/s00122-003-1462-2 14564395
4. Bassi, D. 1993. Castagno da frutto: valorizziamo la qualità. Riv. Fruttic. 12: 39-41.
5. Bazzigher, G., and Miller, G.A. 1991. Blight-resistant chestnut selections of Switzerland: a valuable germ plasm resource. Plant Dis. 75: 5-9.
6. Bergamini, A. 1975. Osservazioni sulla morfologia fiorale di alcune cultivar di castagno. Riv. Ortoflorofruttic. Ital. 59: 103-108.
7. Bergougnoux, F., Verlhac, A., Breisch, H., and Chapa, J. 1978. Le châtaignier. Production et culture. INVUFLEC, Centre d'experimentation du Châtaignier, Noyer, Noisettier et Truffe, Limoges.
8. Boccacci, P., Akkak, A., and Botta, R. 2006. DNA typing and genetic relations among European hazelnut (Corylus avellana L.) cultivars using microsatellite markers. Genome, 49: 598-611. 10.1139/G06-017 16936839
9. Botta, R., Akkak, A., Marinoni, D., Bounous, G., Kampfer, S., Steinkellner, H., and Lexer, C. 1999. Evaluation of microsatellite markers for characterizing chestnut cultivars. Acta Hortic. 494: 277-282.
10. Botta, R., Marinoni, D., Beccaro, G., Akkak, A., and Bounous, G. 2001. Development of a DNA typing technique for the genetic certification of chestnut cultivars. For. Snow Landsc. Res. 76: 425-428.
11. Bounous, G., and De Guarda-Bounous, A. 1999. Among the chestnut trees in Cuneo Province. Edizioni Metafore, Cuneo.
12. Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R., and Cavalli-Sforza, L.L. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature (London), 368: 455-457.
13. Breisch, H., Boutitie, A., Reyne, J., Salesses, G., and Vaysse, P. 1995. Châtaignes et Marrons. édition du Centre technique interprofessionnel des fruits et légumes, Paris.
14. Breviglieri, N. 1951. Ricerche sulla biologia fiorale e di fruttificazione della Castanea sativa e Castanea crenata nel territorio Vallombroso (Centro Studi sul Castagno 1). La Rivista Scientifica, 21. (Suppl.): 15-50.
15. Buck, E.J., Hadonou, M., James, C.J., Blakesley, D., and Russell, K. 2003. Isolation and characterization of polymorphic microsatellites in European chestnut (Castanea sativa Mill.). Mol. Ecol. Notes, 3: 239-241. 10.1046/j.1471-8286.2003.00410.x
16. Camus, A. 1929. Les châtaigniers. Monographie des genres Castanea et Castanopsis. Encycl. Econ. Sylvic. 3: 1-604.
17. Casasoli, M., Mattioni, C., Cherubini, M., and Villani, F. 2001. A genetic linkage map of European chestnut (Castnea sativa Mill.) based on RAPD, ISSR and isozyme markers. Theor. Appl. Genet. 102: 1190-1199. 10.1007/s00122-001-0553-1
18. Conedera, M. 1994. Inventario e caratterizzazione genetica delle varietà nostrane di castagno da frutto. Boll. Soc. Tic. Sci. Nat. 82: 39-50.
19. Conedera, M. 1996. Die Kastanie: der Brotbaum. Vergangenheit, Gegenwart und Zukunft der "Waldfrucht par excellence". Bündnerwald, 49: 28-46.
20. Conedera, M., Müller-Starck, G., and Fineschi, S. 1994. Genetic characterization of cultivated varieties of European Chestnut (Castanea sativa Mill.) in Southern Switzerland. I. Inventory of chestnut varieties: history and perspectives. In Proceedings of the International Congress on Chestnut, Spoleto, Italy, 20-23 October 1993. Edited by Comunità Montana Monti Martani e Serano of Spoleto. Istituto di Coltivazioni Arboree, University of Perugia, Spoleto, Italy. pp. 299-302.
21. Conedera, M., Jermini, M., Jermini, G., Sassella, A., Künsch, U., Schärer, H., Patrian, B., and Höhn, E. 2001. Analisi chimica e sensoriale di differenti varietà di castagne. In Atti del Convegno Nazionale sul Castagno, 25-27 October 2001. Edited by E. Bellini. Marradi Firenze, Italy. pp. 268-280.
22. Conedera, M., Krebs, P., Tinner, W., Pradella, M., and Torriani, D. 2004. a. The cultivation of Castanea sativa (Mill.) in Europe, from its origin to its diffusion on a continental scale. Veg. Hist. Archaeobot. 13: 161-179. 10.1007/s00334-004-0038-7
23. Conedera, M., Manetti, M.C., Giudici, F., and Amorini, E. 2004. b. Distribution and economic potential of the Sweet chestnut (Castanea sativa Mill.) in Europe. Ecol. Medit. 30: 179-193.
24. Costa, R., Valdiviesso, T., Marum, L., Fonseca, L., Borges, O., Soeiro, J., et al. 2005. Characterisation of traditional Portuguese Chestnut cultivars by nuclear SSRs. Acta Hortic. 693: 437-440.
25. Dieringer, D., and Schlötterer, C. 2003. Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Notes, 3: 167-169. 10.1046/j.1471-8286.2003.00351.x
26. Fineschi, S., Taurchini, D., Müller-Starck, G., and Conedera, M. 1994. Genetic characterization of cultivated varieties of European chestnut (Castanea sativa Mill.) in Southern Switzerland. III. Analysis of RAPD's molecular markers. In Proceedings of the International Congress on Chestnut, Spoleto, Italy, 20-23 October 1993. Edited by Comunità Montana Monti Martani e Serano of Spoleto. Istituto di Coltivazioni Arboree, University of Perugia, Spoleto, Italy. pp. 309-313.
27. Forneck, A., Konradi, J., and Blaich, R. 2003. A genetic variation analysis of V. vinifera cv. Pinot Noir. Acta Hort. 603: 167-170.
28. Gabrielli, A. 1994. La civiltà del castagno. Monti Boschi, 65: 3.
29. Galderisi, U., Cipollato, M., Di Bernardo, L., De Masi, G., Galano, G., and Cascino, A. 1998. Molecular typing of Italian sweet chestnut cultivars by random amplified polymorphic DNA analysis. J. Hortic. Sci. Biotechnol. 73: 259-263.
30. Gianfranceschi, L., Koller, B., Seglias, N., Kellerhals, M., and Gessler, C. 1996. Molecular selection in apple for resistance to scab caused by Venturia inaequalis. Theor. Appl. Genet. 93: 199-204. 10.1007/s001220050266
31. Goulão, L., Valdiviesso, T., Santana, C., and Moniz Oliveira, C. 2001. Comparison between phenetic characterisation using RAPD and ISSR markers and phenotypic data of cultivated chestnut (Castanea sativa Mill.). Gen. Res. Crop Evol. 48: 329-338. 10.1023/A:1012053731052
32. Kumar, S., Tamura, K., and Nei, M. 1993. MEGA: Molecular Evolutionary Genetics Analysis. Pennsylvania State University, University Park, Pa.
33. Künsch, U., Schärer, H., Patrian, B., Hurter, J., Conedera, M., Sassella, A., Jermini, M., and Jelmini, G. 1999. Quality assessment of chestnut fruits. Acta Hortic. 494: 119-127.
34. Langella, O. 2001. Populations, a free population genetic software. Available from http://bioinformatics.org/~tryphon/populations/.
35. Lavialle, G.B. 1906. Le châtaignier. Vigot Frères, Paris.
36. Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Van de Weg, E., and Gessler, C. 2002. Development and characterisation of 140 new microsatellites in apple (Malus × domestica Borkh.). Mol. Breed. 10: 217-241. 10.1023/A:1020525906332
37. Marinoni, D., Akkak, A., Bounous, G., Edwards, K.J., and Botta, R. 2003. Development and characterization of microsatellite markers in Castanea sativa (Mill.). Mol. Breed. 11: 127-136. 10.1023/A:1022456013692
38. Martin, A.C., Gimenez, M.J., and Alvarez, J.B. 2005. Varietal identification of chestnut using microsatellites markers. Acta Hortic. 693: 441-446.
39. Moncada, X., Muñoz, L., Merdinoglu, D., Castro, M.H., and Hinrichsen, P. 2005. Clonal polymorphism in the red wine cultivars "Carmenière" and "Cabernet Sauvignon". Acta Hortic. 689: 513-520.
40. Moravcova, K., Baranek, M., and Pidra, M. 2006. Use of SSR markers to identify grapevine cultivars registered in the Czech Republic. J. Int. Sci. Vigne Vin, 40: 71-80.
41. Müller-Starck, G., Conedera, M., and Fineschi, S. 1994. Genetic characterization of cultivated varieties of European chestnut (Castanea sativa Mill.) in Southern Switzerland. II. Genetic inventory based on enzyme gene markers. In Proceedings of the International Congress on Chestnut, Spoleto, Italy, 20-23 October 1993. Edited by Comunità Montana Monti Martani e Serano of Spoleto. Istituto di Coltivazioni Arboree, University of Perugia, Spoleto, Italy. pp. 303-307.
42. Perreira-Lorenzo, L., Ramos-Cabrer, A.M., Diáz-Hernandez, A., Ascasíbar-Errasti, J., and Sau, F. 2001. Spanish chestnut cultivars. Hortic. Sci. 36: 344-347.
43. Pertot, I., Fiamingo, F., Amsalem, L., Maymon, M., Freeman, S., Gobbin, D., and Elad, Y. 2007. Sensitivity of two Podosphaera aphanis populations to disease control agents. J. Plant Pathol. 89: 85-96.
44. Piccioli, L. 1922. Monografia del castagno. Suoi caratteri morfologici, varietà, coltivazione, prodotti e nemici. Stabilimento Tipo-Litografico G. Spinelli, Florenz.
45. Pitte, J.R. 1986. Terres de castanide. Hommes et paysages du châtaignier de l'Antiquité à nos jours. Librairie Arthème Fayard.
46. Reed, B.M., Engelmann, F., Dulloo, M.E., and Engels, J.M.M. 2004. Technical guidelines for the management of field and in vitro germplasm collections. IPGRI Handbooks for Genebanks No. 7. International Plant Genetic Resources Institute, Rome, Italy.
47. Rudow, A., and Conedera, M. 2001. Blüte und Sortenerkennung bei der Edelkastanie (Castanea sativa Mill.) auf der Alpensüdseite der Schweiz. Bot. Helv. 111: 1-23.
48. Sawano, M., Ichii, T., Nakanishi, T., and Kotera, Z. 1984. Studies on identification of chestnut species and varieties by isozyme analysis. Sci. Rep. Fac. Agric. Kobe Univ. 16: 67-71.
49. Tenzer, I., Degli Ivanissevich, S., Morgante, M., and Gessler, C. 1999. Identification of microsatellite markers and their application to population genetics of Venturia inaequalis. Phytopathology, 89: 748-753. 10.1094/PHYTO.1999.89.9.748
50. Valle, G., 1959. Osservazioni sulla morfologia dei rami di un anno in abito invernale in alcune cultivar di Castanea sativa Mill. Centro di studio sul castagno, Pubblicazione, 5: 5-94.
51. Vigiani, D., 1908. Le varietà di castagno ed i criteri da seguirsi per classificarle. Atti. R. Accad. Georgofili, 16: 38-73.
52. Vinatzer, B.A., Patocchi, A., Tartarini, S., Gianfranceschi, L., Sansavini, S., and Gessler, C. 2004. Isolation of two microsatellite markers from BAC clones of the Vf scab resistance region and molecular characterization of scab-resistant accessions in Malus germplasm. Plant Breed. 123: 321-326. 10.1111/j.1439-0523.2004.00973.x
53. Wagner, H.W., and Sefc, K.M. 1999. IDENTITY. Version 1.0 [computer program]. Centre for Applied Genetics, University of Agricultural Sciences, Vienna. Available from http://www.boku.ac.at/zag/forsch/identity.htm.