Identification of Heterodera glycines using PCR with sequence characterised amplified region (SCAR) primers

Nematology

Volumn 10, Issue 3, 2008, Pages 397-403

  Ou, Shiqi ^a,b   Peng, Deliang ^a   Liu, Xuemin ^b   Li, Yu ^b   Moens, Maurice ^c,d  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b JILIN AGRICULTURAL UNIVERSITY   (China)

^c INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^d GHENT UNIVERSITY   (Belgium)

Author keywords

Diagnostics; RAPD PCR; Soybean cyst nematode

Indexed keywords

BIOASSAY; CYST; DNA; GENETIC MARKER; IDENTIFICATION METHOD; JUVENILE; NEMATODE; POLYMERASE CHAIN REACTION; SOYBEAN;

GLYCINE MAX; HETERODERA GLYCINES;

EID: 40949150781     PISSN: 13885545     EISSN: 15685411     Source Type: Journal    
DOI: 10.1163/156854108783900212     Document Type: Article

References (27)

1. AL-BANNA, L., WILLIAMSON, V. & GARDNER, S.L. (1997). Phylogenetic analysis of nematodes of the genus Pratylenchus using nuclear 26S rDNA. Molecular Phylogeny and Evolution 7, 94-102.
2. BAUM, T.J., GRESSHOFF, P.M., LEWIS, S.A. & DEAN, R.A. (1994). Characterization and phylogenetic analysis of four root-knot nematode species using DNA amplification finger-printing and automated polyacrylamide gel electrophoresis. Molecular Plant-Microbe Interactions 7, 39-47.
3. BEKAL, S., GAUTHIER, J.P. & RIVOAL, R. (1997). Genetic diversity among a complex of cereal cyst nematodes inferred from RFLP analysis of the ribosomal internal transcribed spacer region. Genome 40, 479-486.
4. BLOK, V.C., PHILLIPS, M.S., MCNICOL, J.W. & FARGETTE, M. (1997). Genetic variation in tropical Meloidogyne species as shown by RAPDs. Fundamental and Applied Nematology 20, 127-133.
5. BULMAN, S.R. & MARSHALL, J.W. (1997). Differentiation of Australasian potato cyst nematode (PCN) populations using the polymerase chain reaction (PCR). New Zealand Journal of Crop and Horticultural Science 25, 123-129.
6. CASWELL-CHEN, E.P., WILLIAMSON, V.M. & WU, F.F. (1992). Random amplified polymorphic DNA analysis of Heterodera cruciferae and H. schachtii populations. Journal of Nematology 24, 343-351.
7. CENIS, J.L. (1993). Identification of four major Meloidogyne spp. by random amplified polymorphic DNA (RAPD-PCR). Phytopathology 83, 76-78.
8. FLEMING, C.C. & POWERS, T.O. (1998). Potato cyst nematode diagnostics: morphology, different hosts and biochemical technique. In: Marks, R.J. & Brodie, B.B. (Eds). Potato cyst nematode. Biology, distribution and control. Wallingford, UK, CABI Publishing, pp. 91-114.
9. FULLAONDO, A., BARRENA, E., VIRIBAY, M., BARRENA, I., SALAZAR, A. & RITTER, E. (1999). Identification of potato cyst nematode species Globodera rostochiensis and G. pallida by PCR using specific primer combinations. Nematology 1, 157-163.
10. KALINSKI, A. & HUETTEL, R.N. (1988). DNA restriction fragment length polymorphism in races of the soybean cyst nematode, Heterodera glycines. Journal of Nematology 20, 532-538.
11. LAX, P., DUENAS, J.C.R., GARDENAL, C.N. & DOUCET, M.E. (2004). Genetic variability estimated with RAPD-PCR markers in two populations of Heterodera glycines Ichinohe, 1952 (Nematoda: Heteroderidae) from Argentina. Nematology 6, 13-21.
12. LOUWS, F.J., RADEMAKER, J.L.W. & DE BRUIN, F.J. (1999). The three Ds of PCR-based genomic analysis of phytobacteria: diversity, detection, and disease diagnosis. Annual Review of Phytopathology 37, 81-125.
13. MULHOLLAND, V., CARDE, L., O'DONNELL, K.J., FLEMING, C.C. & POWERS, T.O. (1996). Use of the polymerase chain reaction to discriminate potato cyst nematode at the species level. In: Marshall, G. (Ed.). Diagnostics in crop production. British Crop Production Council, Symposium Proceedings 65, 247-252.
14. PARAN, I. & MICHELMORE, R.W. (1993). Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theoretic and Applied Genetics 85, 985-993.
15. PETERSEN, D.J., ZIJLSTRA, C. & WISHART, J. (1997). Specific probes efficiently distinguish root-knot nematode species using signature sequence in the ribosomal intergeneric spacer. Fundamental and Applied Nematology 20, 619-626.
16. DA SILVA, A.T., PENNA, J.C.V., GOULART, L.R., SANTOS, M.A. DOS & ARANTES, N.E. (2000). Genetic variability among and within races of Heterodera glycines Ichinohe by RAPD markers. Genetics and Molecular Biology 23, 323-329.
17. SUBBOTIN, S.A., STURHAN, D., WAEYENBERGE, L. & MOENS, M. (1997). Heterodera riparia sp. n. (Tylenchida: Heteroderidae) from common nettle, Urtica dioica L., and rDNA-RFLP separation of species from the H. humuli group. Russian Journal of Nematology 5, 143-157.
18. SUBBOTIN, S.A., WAEYENBERGE, L. & MOENS, M. (2000). Identification of cyst forming nematodes of the genus Heterodera (Nematoda: Heteroderidae) based on the ribosomal DNA-RFLP. Nematology 2, 153-164.
19. SUBBOTIN, S.A., PENG, D.L. & MOENS, M. (2001). A rapid method for the identification of the soybean cyst nematode Heterodera glycines using duplex PCR. Nematology 3, 365-371.
20. SZALANSKI, A., SUI, D.D., HARRIS, T.S. & POWERS, T.O. (1997). Identification of cyst nematodes of agronomic and regulatory concern with PCR-RFLP of ITS1. Journal of Nematology 29, 244-267.
21. THOMAS, W.K., VIDA, J.T., FRISSE, L.M., MUNDO, M. & BALDWIN, J.G. (1997). DNA sequences from formalin-fixed nematodes: integrating molecular and morphological approaches to taxonomy. Journal of Nematology 29, 250-254.
22. UEHARA, T., MIZUKUBO, T., KUSHIDA, A. & MOMOTA, Y. (1998). Identification of Pratylenchus coffeae and P. loosi using specific primers for PCR amplification of ribosomal DNA. Nematologica 44, 357-368.
23. WRATHER, J.A., ANDERSON, T.R., ARSYDA, D.M., TAN, Y. & PLOPER, L.D. (2001). Soybean disease loss estimates for the top ten soybean producing countries in 1998. Canadian Journal of Plant Pathology 23, 115-121.
24. ZHANG, L., DEAN, R.A., KNAP, H.T. & LEWIS, S.A. (1998). Diversity among a Heterodera glycines field isolate and derived inbreds based on RAPD analysis and reproduction on soybean genotypes. Journal of Nematology 30, 477-484.
25. ZIJLSTRA, C. (1997). A fast PCR assay to identify Meloidogyne hapla, M. chitwoodi and M. fallax and to sensitively differentiate them from each other and from M. incognita in mixtures. Fundamental and Applied Nematology 20, 505-511.
26. ZIJLSTRA, C. (2000). Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits. European Journal of Plant Pathology 106, 283-290.
27. ZIJLSTRA, C., DONKERS-VENNE, D.T.H.M. & FARGETTE, M. (2000). Identification of Meloidogyne incognita, M. javanica and M. arenaria using sequence characterised amplified region (SCAR) based PCR assays. Nematology 2, 847-853.