Identification of Pratylenchus coffeae and P. loosi using specific primers for PCR amplification of ribosomal DNA

Nematologica

Volumn 44, Issue 4, 1998, Pages 357-368

  Uehara, T ^a   Mizukubo, T ^b   Kushida, A ^a   Momota, Y ^a  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR HOKKAIDO REGION   (Japan)

^b Kyushu Okinawa Agricultural Research Center   (Japan)

Author keywords

Identification; ITS sequences; PCR; rDNA

Indexed keywords

DNA AMPLIFICATION; DNA FRAGMENT; GENE SEQUENCING; IDENTIFICATION; INTERNAL TRANSCRIBED SPACER; NEMATODE; POLYMERASE CHAIN REACTION; RIBOSOMAL DNA; SPECIES DIFFERENCE;

INVERTEBRATA; PRATYLENCHUS COFFEAE; PRATYLENCHUS LOOSI;

EID: 0031692959     PISSN: 00282596     EISSN: None     Source Type: Journal    
DOI: 10.1163/005525998X00034     Document Type: Article

References (30)

1. BAUM, T.J., LEWIS, S.A. & DEAN, R.A. (1994). Isolation, characterization, and application of DNA probes specific to Meloidogyne arenaria. Phytopathology 84, 489-494.
2. BURROWS, P.R. & PERRY R.N. (1988). Two cloned DNA fragments which differentiate Globodera pallida from G. rostochiensis. Revue de Nématologie 9, 441-445.
3. CASTAGNONE-SERENO, P., ESPARRAGO, G., ABAD, P., LEROY, F. & BONGIOVANNI, M. (1995). Satellite DNA as a target for PCR-specific detection of the plant-parasitic nematode Meloidogyne hapla. Current Genetics 28, 566-570.
4. CASWELL-CHEN, E.P., WILLIAMSON, V.M. & WU, F.F. (1992). Random amplified polymorphic DNA analysis of Heterodera cruciferae and H. schachtii populations. Journal of Nematology 24, 343-351.
5. CENIS, J.L. (1993). Identification of four major Meloidogyne spp. by random amplified polymorphic DNA (RAPD-PCR). Phytopathology 83, 76-78.
6. CHACÓN, M.R, PARKHOUSE, M., BURROWS, P. & GÁRATE, T. (1993). The use of a digoxygenin-labelled synthetic DNA oligonucleotide for the rapid and sensitive identification of Meloidogyne incognita. Fundamental and Applied Nematology 16, 495-499.
7. FERRIS, V.R., FERRIS, J.M. & FAGHIHI, J. (1993). Variation in spacer ribosomal DNA in some cyst-forming species of plant parasitic nematodes. Fundamental and Applied Nematology 16, 177-184.
8. FERRIS, V.R., FERRIS, J.M., FAGHIHI, J. & IREHOLM, A. (1994). Comparisons of isolates of Heterodera avenue using 2-D PAGE protein patterns and ribosomal DNA. Journal of Nematology 26, 144-151.
9. FERRIS, V.R., MILLER, L.I., FAGHIHI, J. & FERRIS, J.M. (1995). Ribosomal DNA comparisons of Globodera from two continents. Journal of Nematology 27, 273-283.
10. GÁRATE, T., ROBINSON, M.P., CHACÓN, M.R. & PARKHOUSE, R.M.E. (1991). Characterization of species and races of the genus Meloidogyne by DNA restriction enzyme analysis. Journal of Nematology 23, 414-420.
11. GOTOH, A. (1974). Geographic distribution of Pratylenchus spp. (Nematoda: Tylenchida) in Japan. Bulletin of the Kyushu Agricultural Experiment Station 17, 139-224 (in Japanese with English summary).
12. GOTOH, A. (1992). The root lesion nematode, Pratylenchus coffeae, in Japan. In: Progress in nematology, pp. 152-154. Ed. K. Nakasono. Tsukuba, Japan: The Japanese Nematological Society (in Japanese).
13. HENSON, J.M. & FRENCH, R. (1993). The polymerase chain reaction and plant disease diagnosis. Annual Review Phytopathology 31, 81-109.
14. IBRAHIM, S.K., PERRY, R.N. & WEBB, R.M. (1995). Use of isoenzyme and protein phenotypes to discriminate between six Pratylenchus species from Great Britain. Annals of Applied Biology 126, 317-327.
15. IBRAHIM, S.K., PERRY, R.N., BURROWS, P.R. & HOOPER, D.J. (1994). Differentiation of species and populations of Aphelenchoides and Ditylenchus angustus using a fragment of ribosomal DNA. Journal of Nematology 26, 412-421.
16. JATALA, P. & BRIDGE, J. (1990). Nematode parasites of root and tuber crops. In: Plant parasitic nematodes in subtropical and tropical agriculture, pp. 137-180. Eds M. Luc, R.A. Sikora & J. Bridge. Wallingford, UK: CAB International.
17. JOYCE, S.A., BURNELL, A.M. & POWERS, T.O. (1994). Characterization of Heterorhabditis isolates by PCR amplification of segments of mtDNA and rDNA genes. Journal of Nematology 26, 260-270.
18. KRUSBERG, L.R. & BLICKENSTAFF, M.L. (1964). Influence of plant growth regulating substaces on reproduction of Ditylenchus dipsaci, Pratylenchus penetrons, and Pratylenchus zeae on alfalfa tissue cultures. Nematologica 10, 145-150.
19. MANIATIS, T., FRITSCH, E.J. & SAMBROOK, J. (1989). Molecular Cloning. A laboratory manual 2nd Edition. New York: Cold Spring Harbor Laboratory Press.
20. MARCHUK, D., DRUMM, M., SAULNO, A. & COLLIN, F. (1991). Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Research 19, 1154.
21. MIZUKUBO, T. (1992). The classification, morphology and distribution of the genus Pratylenchus in Japan. In: Progress in nematology, pp. 40-47. Ed. K. Nakasono. Tsukuba, Japan: The Japanese Nematological Society (in Japanese).
22. ORUI, Y. (1996). Discrimination of the main Pratylenchus species (Nematoda: Pratylenchidae) in Japan by PCR-RFLP analysis. Applied Entomology and Zoology 31, 505-514.
23. PIOTTE, C., CASTAGNONE-SERENO, P., UIJTHOF, J., ABAD, P., BONGIOVANNI, M. & DALMASSO, A. (1992). Molecular characterization of species and populations of Meloidogyne from various geographic origins with repeated-DNA homologous probes. Fundamental and Applied Nematology 15, 271-276.
24. PIOTTE C., CASTAGNONE-SERENO, P., BONGIOVANNI, M., DALMASSO, A. & ABAD, P. (1995). Analysis of a satellite DNA from Meloidogyne hapla and its use as a diagnostic probe. Phytopathology 85, 458-462.
25. SETTERQUIST, R.A., SMITH, G.K., JONES, R. & FOX, G.E. (1996). Diagnostic probes targeting the major sperm protein gene that may be useful in the molecular identification of nematodes. Journal of Nematology 28, 414-421.
26. TARES, S., LEMONTEY, J.M., DE GUIRAN, G. & ABAD, P. (1994). Use of species-specific satellite DNA from Bursaphelenchus xylophilus as a diagnostic probe. Phytopathology 84, 294-298.
27. VRAIN, T.C., WAKARCHUK, D.A., LEVESQUE, A.C. & HAMILTON, R.I. (1992). Intraspecific rDNA restriction fragment length polymorphism in the Xiphinema americanum group. Fundamental and Applied Nematology 15, 563-573.
28. WENDT, K.R., VRAIN, T.C. & WEBSTER, J.M. (1993). Separation of three species of Ditylenchus and some host races of D. dipsaci by restriction fragment length polymorphism. Journal of Nematology 25, 555-563.
29. WILLAMSON, V.W., CASWELL-CHEN, E.P., WESTERDAHL, B.B., WU, F.F. & GARYI, G. (1997). A PCR assay to identify and distinguish single juveniles of Meloidogyne hapla and M. chitwoodi. Journal of Nematology 29, 9-15.
30. ZIJLSTRA, C., LEVER, A.E.M., UENK, B.J. & VAN SILFHOUT, C.H. (1995). Differences between ITS regions of isolates of root-knot nematodes Meloidogyne hapla and M. chitwoodi. Phytopathology 85, 1231-1237.