메뉴 건너뛰기




Volumn 98, Issue 3, 2008, Pages 359-368

Development and optimization of a real-time detection assay for Xanthomonas fragariae in strawberry crown tissue with receiver operating characteristic curve analysis

Author keywords

Black cap; Mann Whitney U statistic

Indexed keywords

ARTICLE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; PLANT DISEASE; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; ROC CURVE; STRAWBERRY; XANTHOMONAS;

EID: 40849099024     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-98-3-0359     Document Type: Article
Times cited : (29)

References (32)
  • 1
    • 0034406722 scopus 로고    scopus 로고
    • Different outcomes of the Wilcoxon-Mann-Whitney test from different statistics packages
    • Bergmann, R., Ludbrook, J., and Spooren, W. P. J. M. 2000. Different outcomes of the Wilcoxon-Mann-Whitney test from different statistics packages. Am. Stat. 54:72-77.
    • (2000) Am. Stat , vol.54 , pp. 72-77
    • Bergmann, R.1    Ludbrook, J.2    Spooren, W.P.J.M.3
  • 2
    • 0034732977 scopus 로고    scopus 로고
    • Herd-level interpretation of test results for epidemiologic studies of animal diseases
    • Christensen, J., and Gardner, I. A. 2000. Herd-level interpretation of test results for epidemiologic studies of animal diseases. Prev. Vet. Med. 45:83-106.
    • (2000) Prev. Vet. Med , vol.45 , pp. 83-106
    • Christensen, J.1    Gardner, I.A.2
  • 3
    • 0037161811 scopus 로고    scopus 로고
    • da Silva, A. C. R, Ferro, J. A, Reinach, F. C, Farah, C. S, Furlan, L. R, Quaggio, R. B, Monteiro-Vitorello, C. B, Van Sluys, M. A, Almeida, N. F, Alves, L. M. C, do Amaral, A. M, Bertolinni, M. C, Camargo, I. E. A, Camarotte, G, Cannavan, F, Cardozo, J, Chambergo, F, Ciapina, L. P, Cicarelli, R. M. B, Coutinho, L. L, Cursino-Santos, J. R, El-Dorry, H, Faria, J. B, Ferreira, A. J. S, Ferreira, R. C. C, Ferro, M. I. T, Formighieri, E. F, Franco, M. C, Greggio, C. C, Gruber, A, Katsuyama, A. M, Kishi, L. T, Leite, R. P, Lemos, E. G. M, Lemos, M .V. F, Locall, E. C, Machado, M. A, Madeira, A. M. B. N, Marinez-Rossi, N. M, Martins, E. C, Meidanis, J, Menck, C. F. M, Miyaki, C. Y, Moon, D. H, Moreira, L. M, Novo, M. T. M, Okura, V. K, Oliveira, M. C, Oliveira, V. R, Pereira, H. A, Rossi, A, Sena, J. A. D, Silva, C, de Souza, R. F, Spinola, R. A. F, Takita, M. A, Tamura, R. E, Teixera, E. C, Tezza, R. I. D, Trinidade dos Dantos, M
    • da Silva, A. C. R., Ferro, J. A., Reinach, F. C., Farah, C. S., Furlan, L. R., Quaggio, R. B., Monteiro-Vitorello, C. B., Van Sluys, M. A., Almeida, N. F., Alves, L. M. C., do Amaral, A. M., Bertolinni, M. C., Camargo, I. E. A., Camarotte, G., Cannavan, F., Cardozo, J., Chambergo, F., Ciapina, L. P., Cicarelli, R. M. B., Coutinho, L. L., Cursino-Santos, J. R., El-Dorry, H., Faria, J. B., Ferreira, A. J. S., Ferreira, R. C. C., Ferro, M. I. T., Formighieri, E. F., Franco, M. C., Greggio, C. C., Gruber, A., Katsuyama, A. M., Kishi, L. T., Leite, R. P., Lemos, E. G. M., Lemos, M .V. F., Locall, E. C., Machado, M. A., Madeira, A. M. B. N., Marinez-Rossi, N. M., Martins, E. C., Meidanis, J., Menck, C. F. M., Miyaki, C. Y., Moon, D. H., Moreira, L. M., Novo, M. T. M., Okura, V. K., Oliveira, M. C., Oliveira, V. R., Pereira, H. A., Rossi, A., Sena, J. A. D., Silva, C., de Souza, R. F., Spinola, R. A. F., Takita, M. A., Tamura, R. E., Teixera, E. C., Tezza, R. I. D., Trinidade dos Dantos, M., Truffi, D., Tsai, S. M., White, F. F., Setubal, J. C., and Kitajima, J. P. 2002. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417:459-463.
  • 4
    • 0023710206 scopus 로고
    • Comparing the area under two or more correlated receiver operating characteristic curves: A nonparametric approach
    • DeLong, E. R., DeLong, D. M., and Clarke-Pearson, D. L. 1988. Comparing the area under two or more correlated receiver operating characteristic curves: A nonparametric approach. Biometrics 44:837-845.
    • (1988) Biometrics , vol.44 , pp. 837-845
    • DeLong, E.R.1    DeLong, D.M.2    Clarke-Pearson, D.L.3
  • 5
    • 34548843663 scopus 로고    scopus 로고
    • A statistical comparison of the blossom blight forecasts of MARYBLYT and Cougarblight with receiver operating characteristic (ROC) curve analysis
    • Dewdney, M. M., Biggs, A. R., and Turechek, W. W. 2007. A statistical comparison of the blossom blight forecasts of MARYBLYT and Cougarblight with receiver operating characteristic (ROC) curve analysis. Phytopathology 97:1164-1176.
    • (2007) Phytopathology , vol.97 , pp. 1164-1176
    • Dewdney, M.M.1    Biggs, A.R.2    Turechek, W.W.3
  • 6
    • 40849095690 scopus 로고    scopus 로고
    • Page 346 in: Real-Time PCR: An Essential Guide
    • Edwards, K, Logan, J, and Saunders, N, eds, Wymondham, Norfolk
    • Edwards, K., Logan, J., and Saunders, N. (eds.). 2004. Page 346 in: Real-Time PCR: An Essential Guide. Horizon Bioscience, Wymondham, Norfolk.
    • (2004) Horizon Bioscience
  • 7
    • 0000022923 scopus 로고
    • Quality-control programs for seedborne pathogens
    • Geng, S., Campbell, R. N., Carter, M., and Hills, F. J. 1983. Quality-control programs for seedborne pathogens. Plant Dis. 67:236-242.
    • (1983) Plant Dis , vol.67 , pp. 236-242
    • Geng, S.1    Campbell, R.N.2    Carter, M.3    Hills, F.J.4
  • 8
    • 0020083498 scopus 로고
    • The meaning and use of the area under the receiver operating characteristic (ROC) curve
    • Hanley, J. A., and McNeil, B. J. 1982. The meaning and use of the area under the receiver operating characteristic (ROC) curve. Radiology 143:29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 9
    • 1542277517 scopus 로고    scopus 로고
    • Immunocapture and multiplexed-PCR assay for Xanthomonas fragariae, causal agent of angular leaf spot disease
    • Hartung, J. S., and Pooler, M. R. 1997. Immunocapture and multiplexed-PCR assay for Xanthomonas fragariae, causal agent of angular leaf spot disease. Acta Hortic. 439:821-828.
    • (1997) Acta Hortic , vol.439 , pp. 821-828
    • Hartung, J.S.1    Pooler, M.R.2
  • 10
    • 0038143580 scopus 로고
    • A method for characterizing Pseudomonas solanacearum
    • Hayward, A. C. 1960. A method for characterizing Pseudomonas solanacearum. Nature 186:405-406.
    • (1960) Nature , vol.186 , pp. 405-406
    • Hayward, A.C.1
  • 11
    • 0013168780 scopus 로고
    • Procedures for growth and inoculation of Xanthomonas fragariae, causal organism of angular leaf spot of strawberry
    • Hazel, W. J., Civerolo, E. L., and Bean, G. A. 1980. Procedures for growth and inoculation of Xanthomonas fragariae, causal organism of angular leaf spot of strawberry. Plant Dis. 64:178-181.
    • (1980) Plant Dis , vol.64 , pp. 178-181
    • Hazel, W.J.1    Civerolo, E.L.2    Bean, G.A.3
  • 12
    • 0037400825 scopus 로고    scopus 로고
    • Evaluating predictive models with application in regulatory policy for invasive weeds
    • Hughes, G., and Madden, L. V. 2003. Evaluating predictive models with application in regulatory policy for invasive weeds. Agric. Syst. 76:755-774.
    • (2003) Agric. Syst , vol.76 , pp. 755-774
    • Hughes, G.1    Madden, L.V.2
  • 13
    • 0032895867 scopus 로고    scopus 로고
    • Decision-making and diagnosis in disease management
    • Hughes, G., McRoberts, N., and Burnett, F. J. 1999. Decision-making and diagnosis in disease management. Plant Pathol. 48:147-153.
    • (1999) Plant Pathol , vol.48 , pp. 147-153
    • Hughes, G.1    McRoberts, N.2    Burnett, F.J.3
  • 14
    • 0000495833 scopus 로고
    • Angular leaf spot of strawberry caused by Xanthomonas fragariae sp. nov
    • Kennedy, B. W., and King, T. H. 1962. Angular leaf spot of strawberry caused by Xanthomonas fragariae sp. nov. Phytopathology 52:873-875.
    • (1962) Phytopathology , vol.52 , pp. 873-875
    • Kennedy, B.W.1    King, T.H.2
  • 16
    • 33747233739 scopus 로고    scopus 로고
    • Quantitative real time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing
    • Li, W., Hartung, J. S., and Levy, L. E. 2006. Quantitative real time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing. J. Microbiol. Methods 66:104-115.
    • (2006) J. Microbiol. Methods , vol.66 , pp. 104-115
    • Li, W.1    Hartung, J.S.2    Levy, L.E.3
  • 17
    • 0002987556 scopus 로고
    • Bacterial angular leafspot disease of strawberry: Present status and prospects for control
    • Maas, J. L., Pooler, M. R., and Galleta, G. J. 1995. Bacterial angular leafspot disease of strawberry: Present status and prospects for control. Adv. Strawberry Res. 14:18-24.
    • (1995) Adv. Strawberry Res , vol.14 , pp. 18-24
    • Maas, J.L.1    Pooler, M.R.2    Galleta, G.J.3
  • 18
    • 0001345404 scopus 로고
    • Evaluating the health status of herds based on tests applied to individuals
    • Martin, S. W., Shoukri, M., Thorburn, M. A. 1992. Evaluating the health status of herds based on tests applied to individuals. Prev. Vet. Med. 14:33-43.
    • (1992) Prev. Vet. Med , vol.14 , pp. 33-43
    • Martin, S.W.1    Shoukri, M.2    Thorburn, M.A.3
  • 19
    • 0018079655 scopus 로고
    • Basic principles of ROC analysis
    • Metz, C. E. 1978. Basic principles of ROC analysis. Nucl. Med. 8:283-298.
    • (1978) Nucl. Med , vol.8 , pp. 283-298
    • Metz, C.E.1
  • 21
    • 0023461268 scopus 로고
    • Specific synthesis of DNA in vitro via a polymerase catalized chain reaction
    • Mullis, K. B., and Faloona, F. A. 1987. Specific synthesis of DNA in vitro via a polymerase catalized chain reaction. Method. Enzymol. 55:335-350.
    • (1987) Method. Enzymol , vol.55 , pp. 335-350
    • Mullis, K.B.1    Faloona, F.A.2
  • 22
    • 31744441820 scopus 로고    scopus 로고
    • Confidence intervals for an effect size measure based on the Mann-Whitney statistic. Part 1: General issues and tail-area-based methods
    • Newcombe, R. G. 2006. Confidence intervals for an effect size measure based on the Mann-Whitney statistic. Part 1: General issues and tail-area-based methods. Stat. Med. 25:543-557.
    • (2006) Stat. Med , vol.25 , pp. 543-557
    • Newcombe, R.G.1
  • 23
    • 31744437906 scopus 로고    scopus 로고
    • Confidence intervals for an effect size measure based on the Mann-Whitney statistic. Part 2: Asymptotic methods and evaluation
    • Newcombe, R. G. 2006. Confidence intervals for an effect size measure based on the Mann-Whitney statistic. Part 2: Asymptotic methods and evaluation. Stat. Med. 25:559-573.
    • (2006) Stat. Med , vol.25 , pp. 559-573
    • Newcombe, R.G.1
  • 24
    • 0029829244 scopus 로고    scopus 로고
    • Genetic relationships among strains of Xanthomonas fragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for the identification of this pathogen
    • Pooler, M. R., Ritchie, D. F., and Hartung, J. S. 1996. Genetic relationships among strains of Xanthomonas fragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for the identification of this pathogen. Appl. Environ. Microbiol. 62:3121-3127.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 3121-3127
    • Pooler, M.R.1    Ritchie, D.F.2    Hartung, J.S.3
  • 25
    • 0028336890 scopus 로고
    • Diagnostic tests - a statistical review
    • Schulzer, M. 1994. Diagnostic tests - a statistical review. Muscle Nerve 17:815-819.
    • (1994) Muscle Nerve , vol.17 , pp. 815-819
    • Schulzer, M.1
  • 26
    • 40849107773 scopus 로고    scopus 로고
    • Sen, P. K. 1960. On some convergence properties of U-statistics. Calcutta Stat. Assoc. 10:1-18.
    • Sen, P. K. 1960. On some convergence properties of U-statistics. Calcutta Stat. Assoc. 10:1-18.
  • 28
    • 20044392567 scopus 로고    scopus 로고
    • Evaluating predictors of apple scab with receiver operating characteristic curve analysis
    • Turechek, W. W., and Wilcox, W. F. 2005. Evaluating predictors of apple scab with receiver operating characteristic curve analysis. Phytopathology 95:679-691.
    • (2005) Phytopathology , vol.95 , pp. 679-691
    • Turechek, W.W.1    Wilcox, W.F.2
  • 29
    • 0032124201 scopus 로고    scopus 로고
    • Forecasting sclerotinia stem rot in spring sown oilseed rape
    • Twengström, E., Sigvald, R., Svensson, C., Yuen, J. 1998. Forecasting sclerotinia stem rot in spring sown oilseed rape. Crop Prot. 17:405-411.
    • (1998) Crop Prot , vol.17 , pp. 405-411
    • Twengström, E.1    Sigvald, R.2    Svensson, C.3    Yuen, J.4
  • 30
    • 40849097343 scopus 로고    scopus 로고
    • Vega, F., Medeiros, J. L., and Luthra, R. 2002. Taqman PCR in the detection and quantification of chromosomal translocations in follicular lymphoma, mantle cell lymphoma and chronic myeloid leukemia: TaqMan real-time PCR assay. Internet J. Pathol. (ISSN 1528-8307):2(1).
    • Vega, F., Medeiros, J. L., and Luthra, R. 2002. Taqman PCR in the detection and quantification of chromosomal translocations in follicular lymphoma, mantle cell lymphoma and chronic myeloid leukemia: TaqMan real-time PCR assay. Internet J. Pathol. (ISSN 1528-8307):2(1).
  • 31
    • 0036677749 scopus 로고    scopus 로고
    • Bayesian analysis of plant disease prediction
    • Yuen, J., and Hughes, G. 2002. Bayesian analysis of plant disease prediction. Plant Pathol. 51:407-412.
    • (2002) Plant Pathol , vol.51 , pp. 407-412
    • Yuen, J.1    Hughes, G.2
  • 32
    • 0030301077 scopus 로고    scopus 로고
    • Calibration and verification of risk algorithms using logistic regression
    • Yuen, J., Twengström, E., and Sigvald, R. 1996. Calibration and verification of risk algorithms using logistic regression. Eur. J. Plant Pathol. 102:847-854.
    • (1996) Eur. J. Plant Pathol , vol.102 , pp. 847-854
    • Yuen, J.1    Twengström, E.2    Sigvald, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.