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Volumn 12, Issue 1, 2008, Pages 78-85

Proteomics and diagnostics: Let's Get Specific, again

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; APTAMER; BIOLOGICAL MARKER; REAGENT;

EID: 40849092422     PISSN: 13675931     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpa.2008.01.016     Document Type: Review
Times cited : (69)

References (32)
  • 1
    • 0029379551 scopus 로고
    • Let's get specific: the relationship between specificity and affinity
    • Shows that the factors that contribute to high affinity are the same as those that determine specificity.
    • Eaton B.E., Gold L., and Zichi D.A. Let's get specific: the relationship between specificity and affinity. Chem Biol 2 (1995) 633-638. Shows that the factors that contribute to high affinity are the same as those that determine specificity.
    • (1995) Chem Biol , vol.2 , pp. 633-638
    • Eaton, B.E.1    Gold, L.2    Zichi, D.A.3
  • 2
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C., and Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249 (1990) 505-510
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 3
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington A.D., and Szostak J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346 (1990) 818-822
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 4
    • 0029165745 scopus 로고
    • High-affinity ssDNA inhibitors of the reverse transcriptase of type 1 human immunodeficiency virus
    • Schneider D.J., Feigon J., Hostomsky Z., and Gold L. High-affinity ssDNA inhibitors of the reverse transcriptase of type 1 human immunodeficiency virus. Biochemistry 34 (1995) 9599-9610
    • (1995) Biochemistry , vol.34 , pp. 9599-9610
    • Schneider, D.J.1    Feigon, J.2    Hostomsky, Z.3    Gold, L.4
  • 5
    • 0029031094 scopus 로고
    • Oligonucleotides as research, diagnostic, and therapeutic agents
    • Gold L. Oligonucleotides as research, diagnostic, and therapeutic agents. J Biol Chem 270 (1995) 13581-13584
    • (1995) J Biol Chem , vol.270 , pp. 13581-13584
    • Gold, L.1
  • 6
    • 84889429498 scopus 로고    scopus 로고
    • Wiley-VCH, Weinheim. An important collection of articles about aptamers that spans the range from practical to theoretical.
    • Klussmann S. The Aptamer Handbook: Functional Oligonucleotides and their Applications (2006), Wiley-VCH, Weinheim. An important collection of articles about aptamers that spans the range from practical to theoretical.
    • (2006) The Aptamer Handbook: Functional Oligonucleotides and their Applications
    • Klussmann, S.1
  • 7
    • 35148842343 scopus 로고    scopus 로고
    • High-throughput proteomics using antibody microarrays: an update
    • A useful review of the state of the art of antibody microarrays.
    • Borrebaeck C.A., and Wingren C. High-throughput proteomics using antibody microarrays: an update. Expert Rev Mol Diagn 7 (2007) 673-686. A useful review of the state of the art of antibody microarrays.
    • (2007) Expert Rev Mol Diagn , vol.7 , pp. 673-686
    • Borrebaeck, C.A.1    Wingren, C.2
  • 8
    • 0002381380 scopus 로고
    • A method for the detection of RNA-DNA complexes
    • Nygaard A.P., and Hall B.D. A method for the detection of RNA-DNA complexes. Biochem Biophys Res Commun 12 (1963) 98-104
    • (1963) Biochem Biophys Res Commun , vol.12 , pp. 98-104
    • Nygaard, A.P.1    Hall, B.D.2
  • 9
    • 0013786552 scopus 로고
    • A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane
    • Gillespie D., and Spiegelman S. A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane. J Mol Biol 12 (1965) 829-842
    • (1965) J Mol Biol , vol.12 , pp. 829-842
    • Gillespie, D.1    Spiegelman, S.2
  • 10
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • This work foreshadows the complete elucidation of the human transcriptome, and leads to the possibility that far more of the genome than expected appears as RNA - one wonders if all such RNAs are important or represent noise from unavoidably 'sloppy' DNA-dependent RNA polymerases.
    • Birney E., Stamatoyannopoulos J.A., Dutta A., Guigo R., Gingeras T.R., Margulies E.H., Weng Z., Snyder M., Dermitzakis E.T., Thurman R.E., et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447 (2007) 799-816. This work foreshadows the complete elucidation of the human transcriptome, and leads to the possibility that far more of the genome than expected appears as RNA - one wonders if all such RNAs are important or represent noise from unavoidably 'sloppy' DNA-dependent RNA polymerases.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigo, R.4    Gingeras, T.R.5    Margulies, E.H.6    Weng, Z.7    Snyder, M.8    Dermitzakis, E.T.9    Thurman, R.E.10
  • 11
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell P.H. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250 (1975) 4007-4021
    • (1975) J Biol Chem , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 12
    • 34548427052 scopus 로고    scopus 로고
    • Mapping the human proteome using antibodies
    • A short overview of the HUPO Antibody Initiative and the Human Protein Atlas program (http://www.proteinatlas.org/).
    • Uhlen M. Mapping the human proteome using antibodies. Mol Cell Proteomics 6 (2007) 1455-1456. A short overview of the HUPO Antibody Initiative and the Human Protein Atlas program (http://www.proteinatlas.org/).
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1455-1456
    • Uhlen, M.1
  • 13
    • 36849039867 scopus 로고    scopus 로고
    • Identification of differentially expressed proteins in ovarian cancer using high-density protein microarrays
    • Uses protein microarrays to detect autoantibodies in sera to identify proteins associated with ovarian cancer.
    • Hudson M.E., Pozdnyakova I., Haines K., Mor G., and Snyder M. Identification of differentially expressed proteins in ovarian cancer using high-density protein microarrays. Proc Natl Acad Sci U S A 104 (2007) 17494-17499. Uses protein microarrays to detect autoantibodies in sera to identify proteins associated with ovarian cancer.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 17494-17499
    • Hudson, M.E.1    Pozdnyakova, I.2    Haines, K.3    Mor, G.4    Snyder, M.5
  • 15
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A 95 (1998) 1460-1465
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 16
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews D.H., Sabina J., Zuker M., and Turner D.H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288 (1999) 911-940
    • (1999) J Mol Biol , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 17
    • 33747874580 scopus 로고    scopus 로고
    • CONTRAfold: RNA secondary structure prediction without physics-based models
    • Do C.B., Woods D.A., and Batzoglou S. CONTRAfold: RNA secondary structure prediction without physics-based models. Bioinformatics 22 (2006) e90-e98
    • (2006) Bioinformatics , vol.22
    • Do, C.B.1    Woods, D.A.2    Batzoglou, S.3
  • 18
    • 0025112794 scopus 로고
    • Searching for peptide ligands with an epitope library
    • Scott J.K., and Smith G.P. Searching for peptide ligands with an epitope library. Science 249 (1990) 386-390
    • (1990) Science , vol.249 , pp. 386-390
    • Scott, J.K.1    Smith, G.P.2
  • 19
    • 0027266779 scopus 로고
    • Libraries of peptides and proteins displayed on filamentous phage
    • Smith G.P., and Scott J.K. Libraries of peptides and proteins displayed on filamentous phage. Methods Enzymol 217 (1993) 228-257
    • (1993) Methods Enzymol , vol.217 , pp. 228-257
    • Smith, G.P.1    Scott, J.K.2
  • 20
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S., and Song O. A novel genetic system to detect protein-protein interactions. Nature 340 (1989) 245-246
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 21
    • 0031933534 scopus 로고    scopus 로고
    • Yeast two-hybrid: so many interactions, (in) so little time
    • Young K.H. Yeast two-hybrid: so many interactions, (in) so little time. Biol Reprod 58 (1998) 302-311
    • (1998) Biol Reprod , vol.58 , pp. 302-311
    • Young, K.H.1
  • 23
    • 34748919097 scopus 로고    scopus 로고
    • Design of recombinant antibody microarrays for complex proteome analysis: choice of sample labeling-tag and solid support
    • Wingren C., Ingvarsson J., Dexlin L., Szul D., and Borrebaeck C.A. Design of recombinant antibody microarrays for complex proteome analysis: choice of sample labeling-tag and solid support. Proteomics 7 (2007) 3055-3065
    • (2007) Proteomics , vol.7 , pp. 3055-3065
    • Wingren, C.1    Ingvarsson, J.2    Dexlin, L.3    Szul, D.4    Borrebaeck, C.A.5
  • 24
    • 17044414953 scopus 로고    scopus 로고
    • Microarrays based on affinity-tagged single-chain Fv antibodies: sensitive detection of analyte in complex proteomes
    • A description of the state of the art in recombinant antibody microarrays.
    • Wingren C., Steinhauer C., Ingvarsson J., Persson E., Larsson K., and Borrebaeck C.A. Microarrays based on affinity-tagged single-chain Fv antibodies: sensitive detection of analyte in complex proteomes. Proteomics 5 (2005) 1281-1291. A description of the state of the art in recombinant antibody microarrays.
    • (2005) Proteomics , vol.5 , pp. 1281-1291
    • Wingren, C.1    Steinhauer, C.2    Ingvarsson, J.3    Persson, E.4    Larsson, K.5    Borrebaeck, C.A.6
  • 25
    • 33749243597 scopus 로고    scopus 로고
    • Identification of protein expression signatures associated with Helicobacter pylori infection and gastric adenocarcinoma using recombinant antibody microarrays
    • Ellmark P., Ingvarsson J., Carlsson A., Lundin B.S., Wingren C., and Borrebaeck C.A. Identification of protein expression signatures associated with Helicobacter pylori infection and gastric adenocarcinoma using recombinant antibody microarrays. Mol Cell Proteomics 5 (2006) 1638-1646
    • (2006) Mol Cell Proteomics , vol.5 , pp. 1638-1646
    • Ellmark, P.1    Ingvarsson, J.2    Carlsson, A.3    Lundin, B.S.4    Wingren, C.5    Borrebaeck, C.A.6
  • 27
    • 33645241277 scopus 로고    scopus 로고
    • Array-based proteomics: mapping of protein circuitries for diagnostics, prognostics, and therapy guidance in cancer
    • A description of the drawbacks and advantages of several formats of microarrays used in proteomics.
    • Gulmann C., Sheehan K.M., Kay E.W., Liotta L.A., and Petricoin III E.F. Array-based proteomics: mapping of protein circuitries for diagnostics, prognostics, and therapy guidance in cancer. J Pathol 208 (2006) 595-606. A description of the drawbacks and advantages of several formats of microarrays used in proteomics.
    • (2006) J Pathol , vol.208 , pp. 595-606
    • Gulmann, C.1    Sheehan, K.M.2    Kay, E.W.3    Liotta, L.A.4    Petricoin III, E.F.5
  • 29
    • 0036669413 scopus 로고    scopus 로고
    • Dimensionality is the issue: use of photoaptamers in protein microarrays
    • Yet another discussion of obstacles on the path to high-density proteomics.
    • Petach H., and Gold L. Dimensionality is the issue: use of photoaptamers in protein microarrays. Curr Opin Biotechnol 13 (2002) 309-314. Yet another discussion of obstacles on the path to high-density proteomics.
    • (2002) Curr Opin Biotechnol , vol.13 , pp. 309-314
    • Petach, H.1    Gold, L.2
  • 30
    • 0000359208 scopus 로고
    • Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity
    • One of our favorite papers of all time - a clear exposition about the limitations of equilibrium binding when searching for a needle in a haystack.
    • Hopfield J.J. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc Natl Acad Sci U S A 71 (1974) 4135-4139. One of our favorite papers of all time - a clear exposition about the limitations of equilibrium binding when searching for a needle in a haystack.
    • (1974) Proc Natl Acad Sci U S A , vol.71 , pp. 4135-4139
    • Hopfield, J.J.1
  • 31
    • 0017140180 scopus 로고
    • Direct experimental evidence for kinetic proofreading in amino acylation of tRNAIle
    • Hopfield J.J., Yamane T., Yue V., and Coutts S.M. Direct experimental evidence for kinetic proofreading in amino acylation of tRNAIle. Proc Natl Acad Sci U S A 73 (1976) 1164-1168
    • (1976) Proc Natl Acad Sci U S A , vol.73 , pp. 1164-1168
    • Hopfield, J.J.1    Yamane, T.2    Yue, V.3    Coutts, S.M.4
  • 32
    • 34250865921 scopus 로고    scopus 로고
    • Collins, New York. An imaginative description of a better future for healthcare that depends on proteomic arrays and in vivo imaging.
    • Kessler A. The End of Medicine: How Silicon Valley (and Naked Mice) will Reboot your Doctor (2006), Collins, New York. An imaginative description of a better future for healthcare that depends on proteomic arrays and in vivo imaging.
    • (2006) The End of Medicine: How Silicon Valley (and Naked Mice) will Reboot your Doctor
    • Kessler, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.