Genetic structure of the endangered perennial plant Eryngium alpinum (Apiaceae) in an alpine valley

Biological Journal of the Linnean Society

Volumn 93, Issue 4, 2008, Pages 667-677

  Gaudeul, Myriam ^a,b   Till Bottraud, Irène ^a  

^a UNIVERSITÉ JOSEPH FOURIER   (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

Author keywords

Gene flow; Isolation by distance; Landscape; Microsatellites; Nested sampling designs; Pollen and seed dispersal; Spatial autocorrelation; Spatial genetic structure

Indexed keywords

ALPINE ENVIRONMENT; ANGIOSPERM; ENDANGERED SPECIES; GENE FLOW; GENETIC STRUCTURE; HABITAT FRAGMENTATION; LANDSCAPE; PERENNIAL PLANT; POLLEN; POPULATION GENETICS; SAMPLING; SEED DISPERSAL; VALLEY;

APIACEAE; APIALES; ERYNGIUM; ERYNGIUM ALPINUM;

EID: 40749100640     PISSN: 00244066     EISSN: 10958312     Source Type: Journal    
DOI: 10.1111/j.1095-8312.2008.00958.x     Document Type: Article

References (63)

1. Austerlitz F, Dick CW, Dutech C, Klein EK, Oddou-Muratorio S, Smouse PE, Sork VL. 2004. Using genetic markers to estimate the pollen dispersal curve. Molecular Ecology 13 : 937 954.
2. Bacles CFE, Lowe AJ, Ennos RA. 2006. Effective seed dispersal across a fragmented landscape. Science 311 : 628.
3. Barbujani G. 2000. Geographic patterns: how to identify them and why. Human Biology 72 : 133 153.
4. Campbell DR, Dooley JL. 1992. The spatial scale of genetic differentiation in a hummingbird-pollinated plant: comparison with models of isolation by distance. American Naturalist 139 : 735 748.
5. Cavers S, Degen B, Caron H, Lemes MR, Margis R, Salgueiro F, Lowe AJ. 2005. Optimal sampling strategy for estimation of spatial genetic structure in tree populations. Heredity 95 : 281 289.
6. Cherel O, Lavagne A. 1982. Aire de répartition, phénologie, biologie, reproduction d'Eryngium alpinum, 'la Reine des Alpes', dans la vallée du Fournel. Propositions de mesures de protection de l'espèce. Travaux Scientifiques du Parc National des Ecrins 2 : 53 92.
7. Chung MY, Nason JD, Epperson BK, Chung MG. 2003. Temporal aspects of the fine-scale genetic structure in a population of Cinnamomum insularimontanum (Lauraceae). Heredity 90 : 98 106.
8. Corander J, Waldmann P, Sillanpää MJ. 2003. Bayesian analysis of genetic differentiation between populations. Genetics 163 : 367 374.
9. Crandall KA, Bininda-Emonds ORP, Mace GM, Wayne RK. 2000. Considering evolutionary processes in conservation biology. Trends in Ecology and Evolution 15 : 290 295.
10. El Mousadik A, Petit RJ. 1996. High level of genetic differentiation for allelic richness among populations of the Argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theorerical and Applied Genetics 92 : 832 839.
11. Ellstrand NC. 1992. Gene flow by pollen: implications for plant conservation genetics. Oikos 63 : 77 86.
12. Ennos RA. 2001. Inferences about spatial processes in plant populations from the analysis of molecular markers. In : Silvertown J, Antonovics J, eds. Integrating ecology and evolution in a spatial context. Cambridge : Blackwell Science, 45 71.
13. Epperson BK, Li T. 1996. Measurement of genetic structure within populations using Moran's spatial autocorrelation statistics. Proceedings of the National Academy of Sciences of the United States of America 93 : 10528 10532.
14. Escudero A, Iriondo JM, Torres ME. 2003. Spatial analysis of genetic diversity as a tool for plant conservation. Biological Conservation 113 : 351 365.
15. Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distance among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131 : 479 491.
16. Falush D, Stephens M, Pritchard JK. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164 : 1567 1587.
17. Farion A. 1996. Diagnostic et amorces de propositions de gestion sur la fermeture des prairies dans le vallon du Fournel. Gap, France : Rapport de stage, Parc National des Ecrins.
18. Fenster CB, Vekemans X, Hardy O. 2003. Quantifying gene flow from spatial genetic structure in a metapopulation of Chamaecrista fasciculata (Leguminosae). Evolution 57 : 995 1007.
19. Fischer S, Poschlod F, Beinlich B. 1996. Experimental studies on the dispersal of plants and animals on sheep in calcareous grasslands. Journal of Applied Ecology 33 : 1206 1222.
20. Gaudeul M, Naciri-Graven Y, Gauthier P, Pompanon F. 2002. Isolation and characterization of microsatellites in a perennial Apiaceae, Eryngium alpinum L. Molecular Ecology Notes 2 : 107 109.
21. Gaudeul M, Till-Bottraud I. 2003. Low selfing rate in an endangered perennial plant, Eryngium alpinum L. American Journal of Botany 90 : 716 723.
22. Gaudeul M, Till-Bottraud I. 2004. Reproductive ecology of an endangered Alpine plant, Eryngium alpinum L. (Apiaceae): phenology, gene dispersal and reproductive success. Annals of Botany 93 : 711 721.
23. Goudet J. 1995. FSTAT vers. 1.2. A computer program to calculate F-statistics. Journal of Heredity 86 : 485 486.
24. Goudet J, Raymond M, De Meeus T, Rousset F. 1996. Testing differentiation in diploid populations. Genetics 144 : 1933 1940.
25. Guillot G, Mortier F, Estoup A. 2005. Geneland: a computer package for landscape genetics. Molecular Ecology Notes 5 : 712 715.
26. Hardy OJ, Gonzalez-Martinez SC, Fréville H, Boquien G, Mignot A, Colas B, Olivieri I. 2004. Fine-scale genetic structure and gene dispersal in Centaurea corymbosa (Asteraceae) I. Pattern of pollen dispersal. Journal of Evolutionary Biology 17 : 795 806.
27. Hardy OJ, Maggia L, Bandou E, Breyne P, Caron H, Chevallier M-H, Doligez A, Dutech C, Kremer A, Latouche-Hallé C, Troispoux V, Veron V, Degen B. 2006. Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species. Molecular Ecology 15 : 559 571.
28. Hardy OJ, Vekemans X. 1999. Isolation by distance in a continuous population: reconciliation between spatial autocorrelation analysis and population genetics models. Heredity 83 : 145 154.
29. Hardy OJ, Vekemans X. 2002. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2 : 618 620.
30. Heywood JS. 1991. Spatial analysis of genetic variation in plant populations. Annual Review of Ecology and Systematics 22 : 335 355.
31. Hoyle M, Cresswell JE. 2006. Remobilization of initially deposited pollen grains has negligible impact on gene dispersal in bumble bee-pollinated Brassica napus. Functional Ecology 20 : 958 965.
32. Ishihama F, Ueno S, Tsumura Y, Washitani I. 2005. Gene flow and inbreeding depression inferred from fine-scale genetic structure in an endangered heterostylous perennial, Primula Sieboldii. Molecular Ecology 14 : 983 990.
33. Jacquemyn H, Honnay O, Galbusera P, Roldan-Ruiz I. 2004. Genetic structure of the forest herb Primula elatior in a changing landscape. Molecular Ecology 13 : 211 219.
34. Jones TH, Vaillancourt RE, Potts BM. 2006. Detection and visualization of spatial genetic structure in continuous Eucalyptus globulus forest. Molecular Ecology 16 : 697 707.
35. Loiselle BA, Sork VL, Nason J, Graham C. 1995. Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany 82 : 1420 1425.
36. Loveless MD, Hamrick JL. 1984. Ecological determinants of genetic structure of plant populations. Annual Review of Ecology and Systematics 15 : 65 95.
37. Lowe AJ, Jourde B, Breyne P, Colpaert N, Navarro C, Wilson J, Cavers S. 2003. Fine scale genetic structure and gene flow within Costa Rican populations of mahogany (Swietenia macrophylla). Heredity 90 : 268 275.
38. Manel S, Schwartz MK, Luikart G, Taberlet P. 2003. Landscape genetics: combining landscape ecology ad population genetics. Trends in Ecology and Evolution 18 : 189 197.
39. Manni F, Guérard E, Heyer E. 2004. Geographic patterns of genetic, morphologic, linguistic variation: how barriers can be detected by using 'Monmonier's algorithm'. Human Biology 76 : 173 190.
40. Manzano P, Malo JE. 2006. Extreme long-distance seed dispersal via sheep. Frontiers in Ecology and the Environment 4 : 244 248.
41. Marquard PE, Epperson E. 2004. Spatial and population genetic structure of microsatellites in white pine. Molecular Ecology 13 : 3305 3315.
42. McCue KA, Buckler ES, Holtsford TP. 1996. A hierarchical view of genetic structure in the rare annual plant Clarkia springvillensis. Conservation Biology 10 : 1425 1434.
43. Monmonier M. 1973. Maximum-difference barriers: an alternative numerical regionalization method. Geographyraphical Analysis 3 : 245 261.
44. Moritz C. 1994. Defining 'evolutionary significant units' for conservation. Trends in Ecology and Evolution 9 : 373 375.
45. Moritz C. 2002. Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biology 5 : 238 254.
46. Nathan R. 2006. Long-distance dispersal of plants. Science 313 : 786 788.
47. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155 : 945 959.
48. Rosenberg NA, Burke T, Elo K, Feldman MW, Freidlin PJ, Groenen MAM, Hillel J, Mäki-Tanila A, Tixier-Boichard M, Vignal A, Wimmers K, Weigend S. 2001a. Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics 159 : 699 713.
49. Rosenberg NA, Woolf E, Pritchard JK, Schaap T, Gefel D, Shpirer I, Lavi U, Bonne-Tamir B, Hillel J, Feldman MW. 2001b. Distinctive genetic signatures in the Libyan Jews. Proceedings of the National Academy of Sciences of the United States of America 98 : 858 863.
50. Rousset F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145 : 1219 1228.
51. Rousset F. 2000. Genetic differentiation between individuals. Journal of Evolutionary Biology 13 : 58 62.
52. Slatkin M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139 : 457 462.
53. Sork VL, Nason J, Campbell DR, Fernandez J. 1999. Landscape approaches to historical and contemporary gene flow in plants. Trends in Ecology and Evolution 14 : 219 224.
54. Streiff R, Labbe T, Bacilieri R, Steinkellner H, Glössl J, Kremer A. 1998. Within-population genetic structure in Quercus robur L. & Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Molecular Ecology 7 : 317 328.
55. Thomson JD, Eisenhart KS. 2003. Rescue of stranded pollen grains by secondary transfer. Plant Species Biology 18 : 67 74.
56. Vekemans X, Hardy OJ. 2004. New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology 13 : 921 935.
57. Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38 : 1358 1370.
58. Williams CF, Waser NW. 1999. Spatial genetic structure of Delphinium nuttallianum populations: inferences about gene flow. Heredity 83 : 541 550.
59. Womble WH. 1951. Differential systematics. Science 114 : 315 322.
60. Wright S. 1943. Isolation by distance. Genetics 28 : 114 138.
61. Wright S. 1951. The genetical structure of populations. Annals of Eugenics 15 : 323 354.
62. Young AG, Boyle T, Brown T. 1996. The population genetic consequences of habitat fragmentation for plants. Trends in Ecology and Evolution 11 : 413 418.
63. Young AG, Clarke GM. 2000. Genetics, demography and viability of fragmented populations. Cambridge : Cambridge University Press.