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Volumn , Issue , 2008, Pages 90-101

Trellis+: An effective approach for indexing genome-scale sequences using suffix trees

Author keywords

[No Author keywords available]

Indexed keywords

BUFFERING STRATEGY; DATA MANAGEMENT TECHNIQUES; DISK-BASED; EXPONENTIAL GROWTH; HIGH-THROUGHPUT; HUMAN GENOMES; MAIN-MEMORY; SEQUENCE DATA; SEQUENCING METHOD; SOURCE CODES; SUFFIX-TREES;

EID: 40549085012     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (15)

References (16)
  • 4
    • 0036606576 scopus 로고    scopus 로고
    • Fast algorithms for large-scale genome alignment and comparison
    • A. L. Delcher, A. Phillippy, E. Carlton, and S. L. Salzberg. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Research, 30(11):2478-2483, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.11 , pp. 2478-2483
    • Delcher, A.L.1    Phillippy, A.2    Carlton, E.3    Salzberg, S.L.4
  • 6
    • 0037624231 scopus 로고    scopus 로고
    • On the sorting-complexity of suffix tree construction
    • M. Farach-Colton, P. Ferragina, and S. Muthukrishnan. On the sorting-complexity of suffix tree construction. J. of the ACM, 47(6):987-1011, 2000.
    • (2000) J. of the ACM , vol.47 , Issue.6 , pp. 987-1011
    • Farach-Colton, M.1    Ferragina, P.2    Muthukrishnan, S.3
  • 7
    • 0000950910 scopus 로고    scopus 로고
    • The string B-tree: A new data structure for string search in external memory and its applications
    • P. Ferragina and R. Grossi. The string B-tree: a new data structure for string search in external memory and its applications. Journal of the ACM, 46( 2) :236-280, 1999.
    • (1999) Journal of the ACM , vol.46 , Issue.2 , pp. 236-280
    • Ferragina, P.1    Grossi, R.2
  • 10
    • 0042443729 scopus 로고    scopus 로고
    • The hashed position tree (HPT): A suffix tree variant for large data sets stored on slow mass storage devices
    • K. Heumann and H. W. Mewes. The hashed position tree (HPT): A suffix tree variant for large data sets stored on slow mass storage devices. In 3rd South American Workshop on String Processing, 1996.
    • (1996) 3rd South American Workshop on String Processing
    • Heumann, K.1    Mewes, H.W.2
  • 12
    • 70849105828 scopus 로고    scopus 로고
    • The top-compressed suffix tree: A disk-resident index for large sequences
    • R. Japp. The top-compressed suffix tree: A disk-resident index for large sequences. In BNCOD Bioinformatics Workshop, 2004.
    • (2004) BNCOD Bioinformatics Workshop
    • Japp, R.1
  • 14
    • 0035747893 scopus 로고    scopus 로고
    • A indexing huge genome sequences for solving various problems
    • K. Sadakane and T. Shibuy A. Indexing huge genome sequences for solving various problems. Genome Informatics, 12:175-183, 2001.
    • (2001) Genome Informatics , vol.12 , pp. 175-183
    • Sadakane, K.1    Shibuy, T.2
  • 15
    • 25844465842 scopus 로고    scopus 로고
    • Practical methods for con-structing suffix trees
    • Y. Tian, S. Tata, R. A. Hankins, and J. M. Patel. Practical methods for con-structing suffix trees. VLDB Journal, 14(3):281-299, 2005.
    • (2005) VLDB Journal , vol.14 , Issue.3 , pp. 281-299
    • Tian, Y.1    Tata, S.2    Hankins, R.A.3    Patel, J.M.4
  • 16
    • 0001704377 scopus 로고
    • On-line construction of suffix frees
    • E. Ukkonen. On-line construction of suffix frees. Algorithmica, 14(3), 1995.
    • (1995) Algorithmica , vol.14 , pp. 3
    • Ukkonen, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.