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Volumn , Issue , 2007, Pages 833-844

Genome-scale disk-based suffix tree indexing

Author keywords

Disk based; External memory; Genome scale; Sequence indexing; Suffix tree

Indexed keywords

DISK BASED SUFFIX TREE INDEXING; EXTERNAL MEMORY; SEQUENCE INDEXING;

EID: 35448952633     PISSN: 07308078     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1247480.1247572     Document Type: Conference Paper
Times cited : (59)

References (31)
  • 3
    • 0037270315 scopus 로고    scopus 로고
    • AVID: A global alignment program
    • N. Bray, I. Dubchak, and L. Pachter. AVID: A global alignment program. Genome Research, 13(1):97-102, 2003.
    • (2003) Genome Research , vol.13 , Issue.1 , pp. 97-102
    • Bray, N.1    Dubchak, I.2    Pachter, L.3
  • 6
    • 0028516811 scopus 로고
    • Sublinear approximate string matching and biological applications
    • W. Chang and E. Lawler. Sublinear approximate string matching and biological applications. Algorithmica, 12(4/5):327-344, 1994.
    • (1994) Algorithmica , vol.12 , Issue.4-5 , pp. 327-344
    • Chang, W.1    Lawler, E.2
  • 9
    • 0142253939 scopus 로고    scopus 로고
    • A theoretical and experimental study on the construction of suffix arrays in external memory
    • A. Crauser and P. Ferragina. A theoretical and experimental study on the construction of suffix arrays in external memory. Algorithmica, 32:1-35, 2002.
    • (2002) Algorithmica , vol.32 , pp. 1-35
    • Crauser, A.1    Ferragina, P.2
  • 10
    • 0036606576 scopus 로고    scopus 로고
    • Fast algorithms for large-scale genome alignment and comparison
    • A. Delcher, A. Phillippy, J. Carlton, and S. Salzberg. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Research, 30(11):2478-2483, 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.11 , pp. 2478-2483
    • Delcher, A.1    Phillippy, A.2    Carlton, J.3    Salzberg, S.4
  • 15
    • 0000950910 scopus 로고    scopus 로고
    • The string B-tree: A new data, structure for string search in external memory and its applications
    • P. Ferragina and R. Grossi. The string B-tree: a new data, structure for string search in external memory and its applications. Journal of the ACM, 46(2):236-280, 1999.
    • (1999) Journal of the ACM , vol.46 , Issue.2 , pp. 236-280
    • Ferragina, P.1    Grossi, R.2
  • 19
    • 6344252888 scopus 로고    scopus 로고
    • Linear time algorithms for finding and representing all the tandem repeats in a string
    • D. Gusfield and J. Stoye. Linear time algorithms for finding and representing all the tandem repeats in a string. Journal of Computer and System Sciences, 69(4):525-546, 2004.
    • (2004) Journal of Computer and System Sciences , vol.69 , Issue.4 , pp. 525-546
    • Gusfield, D.1    Stoye, J.2
  • 20
    • 0042443729 scopus 로고    scopus 로고
    • The hashed position tree (HPT): A suffix tree variant for large data sets stored on slow mass storage devices
    • K. Heumann and H. W. Mewes. The hashed position tree (HPT): A suffix tree variant for large data sets stored on slow mass storage devices. In 3rd South American Workshop on String Processing, 1996.
    • (1996) 3rd South American Workshop on String Processing
    • Heumann, K.1    Mewes, H.W.2
  • 21
    • 0242470267 scopus 로고    scopus 로고
    • Efficient multiple genome alignment
    • M. Höhl, S. Kurtz, and E. Ohlebusch. Efficient multiple genome alignment. Bioinformatics, 18(supplement 1):312-320, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL.EMENT 1 , pp. 312-320
    • Höhl, M.1    Kurtz, S.2    Ohlebusch, E.3
  • 24
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • Apr
    • E. McCreight. A space-economical suffix tree construction algorithm. Journal of the ACM, 23(2):262-272, Apr. 1976.
    • (1976) Journal of the ACM , vol.23 , Issue.2 , pp. 262-272
    • McCreight, E.1
  • 28
    • 25844465842 scopus 로고    scopus 로고
    • Practical methods for constructing suffix trees
    • Y. Tian, S. Tata, R. Hankins, and J. Patel. Practical methods for constructing suffix trees. VLDB Journal, 14(3):281-299, 2005.
    • (2005) VLDB Journal , vol.14 , Issue.3 , pp. 281-299
    • Tian, Y.1    Tata, S.2    Hankins, R.3    Patel, J.4
  • 29
    • 0001704377 scopus 로고
    • On-line construction of suffix trees
    • E. Ukkonen. On-line construction of suffix trees. Algorithmica, 14(3), 1995.
    • (1995) Algorithmica , vol.14 , Issue.3
    • Ukkonen, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.