Analysis of the intestinal microflora in Hepialus gonggaensis larvae using 16S rRNA sequences

Current Microbiology

Volumn 56, Issue 4, 2008, Pages 391-396

  Yu, Hewei ^a   Wang, Zhongkang ^a   Liu, Li ^a   Xia, Yuxian ^a   Cao, Yueqing ^a   Yin, Youping ^a  

^a CHONGQING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RESTRICTION ENDONUCLEASE; RNA 16S;

ARTICLE; CARNOBACTERIUM; DNA FINGERPRINTING; DNA LIBRARY; ENTEROBACTERIACEAE; HEPIALUS GONGGAENSIS; INTESTINE; INTESTINE FLORA; LARVA; MICROBIAL DIVERSITY; MICROORGANISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PLASMID; PRIORITY JOURNAL; PROTEIN ISOLATION; RAHNELLA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS;

ANIMALS; BACTERIA; BIODIVERSITY; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; INTESTINES; LARVA; LEPIDOPTERA; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

BACTERIA (MICROORGANISMS); CARNOBACTERIUM; HEPIALUS; RAHNELLA;

EID: 40149094747     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-007-9078-4     Document Type: Article

References (26)

1. Barrow GI, Feltham RKA (1993) Cowan and Steel's manual for the identification of medical bacteria. Cambridge: Cambridge University Press, 331 pp
2. Clement BG, Kehl LE, DeBord KL, Kitts CL (1998) Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J Microbiol Methods 31:135-142
3. Dillon RJ (2000) Re-assessment of the role of the insect gut microbiota. Abstract book I-XXI, International Congress of Entomology, Brazil, August 20-26
4. Dillon RJ, Charnley AK (1995) Chemical barriers to gut infection in the desert locust: in vivo production of antimicrobial phenols associated with the bacterium Pantoea agglomerans. J Invert Pathol 66:72-75
5. Felske A, Akkermans ADL, DeVos WM (1998) Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl Environ Microbiol 64:4581-4587
6. Fry J (2000) Bacterial diversity and unculturables. Microbiol Today 27:186-188
7. Holben WE, Williams P, Saarinen M, Särkilahti LK, Apajalahti JHA (2002) Phylogenetic analysis of intestinal microflora indicates a novel Mycoplasma phylotype in farmed and wild salmon. Microb Ecol 44:175-185
8. Huber I, Spanggaard B, Appel KF, Rossen L, Neilson T, Gram L (2004) Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss Walbaum). J Appl Microbiol 96:117-132
9. José LB, Ignacio DB, Imanol RZ, Daniel V, Olivia G, José LM (2007) Sequencing of variable regions of the 16S rRNA gene for identification of lactic acid bacteria isolated from the intestinal microbiota of healthy salmonids. Compar Immunol Microbiol Infect Dis 30:111-118
10. Jun T, Yasuhisa K (2000) Intestinal bacteria affect growth of Bacillus thuringiensis in larvae of the Oriental Tea Tortrix, Homona magnanima Diakonoff (Lepidoptera: Tortricidae). J Invert Pathol 76:222-226
11. Khan AA, Nawaz MS, Robertson L, Khan SA, Cerniglia CE (2001) Identification of predominant human and animal anaerobic intestinal bacterial species by terminal restriction fragment patterns (TRFPs): a rapid, PCR-based method. Mol Cell Probes 15:349-355
12. Lee J, Phung TN, Chang IS, Kim BH, Sung HC (2003) Use of acetate for enrichment of electrochemically active microorganisms and their 16S rDNA analyses. FEMS Microbiol Lett 223:185-191
13. Majida EH, Abdelbasset EH, Fouad D, Mohamed C, Essaid AB, IsmäIl EH (2005) Biological control of bayoud disease in date palm: selection of microorganisms inhibiting the causal agent and inducing defense reactions. Environ Exp Botany 59:224-234
14. Michelle JP, David MS, David JA (2006) Comparison of conventional and molecular techniques to investigate the intestinal microflora of rainbow trout (Oncorhynchus mykiss). Aquaculture 261:194-203
15. Moriya O, Toshiaki K (1996) Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus. Appl Environ Microbiol 62:461-468
16. Muyzer G, DeWaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
17. Osborn AM, Moore ERB, Timmis KN (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2:39-50
18. Ring E, Salinas I, Olsen RE, Nyhaug A, Myklebust R, Mayhew TM (2006) Histological changes in intestine of Atlantic salmon (Salmo salar L.) following in vitro exposure to pathogenic and probiotic bacterial strains [online]. Cell Tissue Res (doi: 10.1007/s00441-006-0323-0 )
19. Schwartz DC, Cantor CR (1984) Separation of yeast chromosome sized DNAs by pulsed field gradient gel electrophoresis. Cell 37:67-75
20. Shotts EB, Teska JH (1989) Bacterial pathogens of aquatic vertebrates. In: Austin B, Austin DA (eds) Methods for the microbiological examination of fish and shellfish. New York: Wiley, pp 184-186
21. Spanggaard B, Huber I, Nielson J, Nielson T, Appel KF, Gram L (2000) The microflora of rainbow trout intestine: a comparison of traditional and molecular identification. Aquaculture 182:1-15
22. Vergin KL, Rappé MS, Giovannoni SJ (2001) Streamlined method to analyze 16S rRNA gene clone libraries. BioTechniques 30:938-944
23. Vesta SA, Aniolas S, Dalius B (2006) Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis. Fisheries Sci 72:597-602
24. Woese CR (1987) Bacterial evolution. Microbiol Rev 51:221-271
25. Yuan ZH, Lan XQ, Yang T, Xiao J, Zhou ZY (2006) Investigation and analysis of the bacteria community in silkworm intestine. Acta Microbiol Sinaca 46:285-291
26. Zhuo FP, Chen SJ, Yin YP (2004) Analysis on the Hepialus gonggaensis' intestinal bacterial flora. J Chongqing Univ Nat Sci Edition 27:26-29