-
1
-
-
0037443976
-
Toucan: Deciphering the cis-regulatory logic of coregulated genes
-
Aerts S, Thijs G, Coessens B, Staes M, Moreau Y, De Moor B (2003) Toucan: deciphering the cis-regulatory logic of coregulated genes. Nucleic Acids Res 31:1753-1764
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1753-1764
-
-
Aerts, S.1
Thijs, G.2
Coessens, B.3
Staes, M.4
Moreau, Y.5
De Moor, B.6
-
2
-
-
0033529654
-
The protein CTCF is required for the enhancer blocking activity of vertebrate insulators
-
Bell AC, West AG, Felsenfeld G (1999) The protein CTCF is required for the enhancer blocking activity of vertebrate insulators. Cell 98:387-396
-
(1999)
Cell
, vol.98
, pp. 387-396
-
-
Bell, A.C.1
West, A.G.2
Felsenfeld, G.3
-
4
-
-
0029796901
-
DNA sequence insertion and evolutionary variation in gene regulation
-
Britten RJ (1996) DNA sequence insertion and evolutionary variation in gene regulation. Proc Natl Acad Sci USA 93:9374-9377
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 9374-9377
-
-
Britten, R.J.1
-
5
-
-
0035563653
-
Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences
-
Chen FC, Vallender EJ, Wang H, Tzeng CS, Li WH (2001) Genomic divergence between human and chimpanzee estimated from large-scale alignments of genomic sequences. J Hered 92:481-489
-
(2001)
J Hered
, vol.92
, pp. 481-489
-
-
Chen, F.C.1
Vallender, E.J.2
Wang, H.3
Tzeng, C.S.4
Li, W.H.5
-
6
-
-
23044457109
-
Chromatin boundaries and chromatin domains
-
Felsenfeld G, Burgess-Beusse B, Farrell C, Gaszner M, Ghirlando R, Huang S, Jin C, Litt M, Magdinier F, Mutskov V, Nakatani Y, Tagami H, West A, Yusufzai T (2004) Chromatin boundaries and chromatin domains. Cold Spring Harb Symp Quant Biol 69:245-250
-
(2004)
Cold Spring Harb Symp Quant Biol
, vol.69
, pp. 245-250
-
-
Felsenfeld, G.1
Burgess-Beusse, B.2
Farrell, C.3
Gaszner, M.4
Ghirlando, R.5
Huang, S.6
Jin, C.7
Litt, M.8
Magdinier, F.9
Mutskov, V.10
Nakatani, Y.11
Tagami, H.12
West, A.13
Yusufzai, T.14
-
7
-
-
20144387496
-
The expression of intact and mutant human apoAI/CIII/AIV/AV gene cluster in transgenic mice
-
Gao J, Wei Y, Huang Y, Liu D, Liu G, Wu M, Wu L, Zhang Q, Zhang Z, Zhang R, Liang C (2005) The expression of intact and mutant human apoAI/CIII/AIV/AV gene cluster in transgenic mice. J Biol Chem 280:12559-12566
-
(2005)
J Biol Chem
, vol.280
, pp. 12559-12566
-
-
Gao, J.1
Wei, Y.2
Huang, Y.3
Liu, D.4
Liu, G.5
Wu, M.6
Wu, L.7
Zhang, Q.8
Zhang, Z.9
Zhang, R.10
Liang, C.11
-
8
-
-
33747453473
-
Insulators: Exploiting transcriptional and epigenetic mechanisms
-
Gaszner M, Felsenfeld G (2006) Insulators: exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 7:703-713
-
(2006)
Nat Rev Genet
, vol.7
, pp. 703-713
-
-
Gaszner, M.1
Felsenfeld, G.2
-
9
-
-
20144379880
-
Transcriptional regulation of apolipoprotein A5 gene expression by the nuclear receptor ROR alpha
-
6
-
Genoux A, Dehondt H, Helleboid-Chapman A, Duhem C, Hum DW, Martin G, Pennacchio LA, Staels B, Fruchart-Najib J, Fruchart JC (2005) Transcriptional regulation of apolipoprotein A5 gene expression by the nuclear receptor ROR alpha. Arterioscler Thromb Vasc Biol 25(6):1186-1192
-
(2005)
Arterioscler Thromb Vasc Biol
, vol.25
, pp. 1186-1192
-
-
Genoux, A.1
Dehondt, H.2
Helleboid-Chapman, A.3
Duhem, C.4
Hum, D.W.5
Martin, G.6
Pennacchio, L.A.7
Staels, B.8
Fruchart-Najib, J.9
Fruchart, J.C.10
-
10
-
-
2342437120
-
Alu repeat analysis in the complete human genome: Trends and variations with respect to genomic composition
-
Grover D, Mukerji M, Bhatnagar P, Kannan K, Brahmachari SK (2004) Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition. Bioinformatics 20:813-817
-
(2004)
Bioinformatics
, vol.20
, pp. 813-817
-
-
Grover, D.1
Mukerji, M.2
Bhatnagar, P.3
Kannan, K.4
Brahmachari, S.K.5
-
11
-
-
0029021324
-
Transcriptional silencer of the Wilms' tumor gene WT1 contains an Alu repeat
-
Hewitt SM, Fraizer GC, Saunders GF (1995) Transcriptional silencer of the Wilms' tumor gene WT1 contains an Alu repeat. J Biol Chem 270:17908-17912
-
(1995)
J Biol Chem
, vol.270
, pp. 17908-17912
-
-
Hewitt, S.M.1
Fraizer, G.C.2
Saunders, G.F.3
-
12
-
-
0029975844
-
Transcriptional regulation of the genes involved in lipoprotein transport. the role of proximal promoters and long-range regulatory elements and factors in apolipoprotein gene regulation
-
Kardassis D, Laccotripe M, Talianidis I, Zannis V (1996) Transcriptional regulation of the genes involved in lipoprotein transport. The role of proximal promoters and long-range regulatory elements and factors in apolipoprotein gene regulation. Hypertension 27:980-1008
-
(1996)
Hypertension
, vol.27
, pp. 980-1008
-
-
Kardassis, D.1
Laccotripe, M.2
Talianidis, I.3
Zannis, V.4
-
13
-
-
0028138909
-
Transcriptional regulation of the apolipoprotein A-IV gene involves synergism between a proximal orphan receptor response element and a distant enhancer located in the upstream promoter region of the apolipoprotein C-III gene
-
Ktistaki E, Lacorte JM, Katrakili N, Zannis VI, Talianidis I (1994) Transcriptional regulation of the apolipoprotein A-IV gene involves synergism between a proximal orphan receptor response element and a distant enhancer located in the upstream promoter region of the apolipoprotein C-III gene. Nucleic Acids Res 22:4689-4696
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4689-4696
-
-
Ktistaki, E.1
Lacorte, J.M.2
Katrakili, N.3
Zannis, V.I.4
Talianidis, I.5
-
14
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
15
-
-
17144407255
-
The APOA1/C3/A4/A5 gene cluster, lipid metabolism and cardiovascular disease risk
-
Lai CQ, Parnell LD, Ordovas JM (2005) The APOA1/C3/A4/A5 gene cluster, lipid metabolism and cardiovascular disease risk. Curr Opin Lipidol 16:153-166
-
(2005)
Curr Opin Lipidol
, vol.16
, pp. 153-166
-
-
Lai, C.Q.1
Parnell, L.D.2
Ordovas, J.M.3
-
16
-
-
0035878327
-
Repetitive elements in the 5′ untranslated region of a human zinc-finger gene modulate transcription and translation efficiency
-
Landry JR, Medstrand P, Mager DL (2001) Repetitive elements in the 5′ untranslated region of a human zinc-finger gene modulate transcription and translation efficiency. Genomics 76:110-116
-
(2001)
Genomics
, vol.76
, pp. 110-116
-
-
Landry, J.R.1
Medstrand, P.2
Mager, D.L.3
-
17
-
-
0023616972
-
Apolipoproteins C-II and C-III in serum quantified by zone immunoelectrophoresis
-
Marz W, Schenk G, Gross W (1987) Apolipoproteins C-II and C-III in serum quantified by zone immunoelectrophoresis. Clin Chem 33:664-669
-
(1987)
Clin Chem
, vol.33
, pp. 664-669
-
-
Marz, W.1
Schenk, G.2
Gross, W.3
-
19
-
-
13444256227
-
Insulin-mediated down-regulation of apolipoprotein A5 gene expression through the phosphatidylinositol 3-kinase pathway: Role of upstream stimulatory factor
-
Nowak M, Helleboid-Chapman A, Jakel H, Martin G, Duran-Sandoval D, Staels B, Rubin EM, Pennacchio LA, Taskinen MR, Fruchart-Najib J, Fruchart JC (2005) Insulin-mediated down-regulation of apolipoprotein A5 gene expression through the phosphatidylinositol 3-kinase pathway: role of upstream stimulatory factor. Mol Cell Biol 25:1537-1548
-
(2005)
Mol Cell Biol
, vol.25
, pp. 1537-1548
-
-
Nowak, M.1
Helleboid-Chapman, A.2
Jakel, H.3
Martin, G.4
Duran-Sandoval, D.5
Staels, B.6
Rubin, E.M.7
Pennacchio, L.A.8
Taskinen, M.R.9
Fruchart-Najib, J.10
Fruchart, J.C.11
-
20
-
-
12944295219
-
The novel apolipoprotein A5 is present in human serum, is associated with VLDL, HDL, and chylomicrons, and circulates at very low concentrations compared with other apolipoproteins
-
O'Brien PJ, Alborn WE, Sloan JH, Ulmer M, Boodhoo A, Knierman MD, Schultze AE, Konrad RJ (2005) The novel apolipoprotein A5 is present in human serum, is associated with VLDL, HDL, and chylomicrons, and circulates at very low concentrations compared with other apolipoproteins. Clin Chem 51:351-359
-
(2005)
Clin Chem
, vol.51
, pp. 351-359
-
-
O'Brien, P.J.1
Alborn, W.E.2
Sloan, J.H.3
Ulmer, M.4
Boodhoo, A.5
Knierman, M.D.6
Schultze, A.E.7
Konrad, R.J.8
-
21
-
-
0025309751
-
Promoter elements and factors required for hepatic and intestinal transcription of the human ApoCIII gene
-
Ogami K, Hadzopoulou-Cladaras M, Cladaras C, Zannis VI (1990) Promoter elements and factors required for hepatic and intestinal transcription of the human ApoCIII gene. J Biol Chem 265:9808-9815
-
(1990)
J Biol Chem
, vol.265
, pp. 9808-9815
-
-
Ogami, K.1
Hadzopoulou-Cladaras, M.2
Cladaras, C.3
Zannis, V.I.4
-
22
-
-
0038491484
-
The human apolipoprotein AV gene is regulated by peroxisome proliferator-activated receptor-alpha and contains a novel farnesoid X-activated receptor response element
-
Prieur X, Coste H, Rodriguez JC (2003) The human apolipoprotein AV gene is regulated by peroxisome proliferator-activated receptor-alpha and contains a novel farnesoid X-activated receptor response element. J Biol Chem 278:25468-25480
-
(2003)
J Biol Chem
, vol.278
, pp. 25468-25480
-
-
Prieur, X.1
Coste, H.2
Rodriguez, J.C.3
-
23
-
-
0034802765
-
Reference intervals for serum apolipoproteins A-I, A-II, B, C-II, C-III, and e in healthy Japanese determined with a commercial immunoturbidimetric assay and effects of sex, age, smoking, drinking, and Lp(a) level
-
Sakurabayashi I, Saito Y, Kita T, Matsuzawa Y, Goto Y (2001) Reference intervals for serum apolipoproteins A-I, A-II, B, C-II, C-III, and E in healthy Japanese determined with a commercial immunoturbidimetric assay and effects of sex, age, smoking, drinking, and Lp(a) level. Clin Chim Acta 312:87-95
-
(2001)
Clin Chim Acta
, vol.312
, pp. 87-95
-
-
Sakurabayashi, I.1
Saito, Y.2
Kita, T.3
Matsuzawa, Y.4
Goto, Y.5
-
24
-
-
0027026168
-
Transcriptional regulation and transpositional selection of active SINE sequences
-
Schmid C, Maraia R (1992) Transcriptional regulation and transpositional selection of active SINE sequences. Curr Opin Genet Dev 2:874-882
-
(1992)
Curr Opin Genet Dev
, vol.2
, pp. 874-882
-
-
Schmid, C.1
Maraia, R.2
-
25
-
-
8744270242
-
Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements
-
Shankar R, Grover D, Brahmachari SK, Mukerji M (2004) Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements. BMC Evol Biol 4:37
-
(2004)
BMC Evol Biol
, vol.4
, pp. 37
-
-
Shankar, R.1
Grover, D.2
Brahmachari, S.K.3
Mukerji, M.4
-
26
-
-
0033585051
-
Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene
-
Sharan C, Hamilton NM, Parl AK, Singh PK, Chaudhuri G (1999) Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene. Biochem Biophys Res Commun 265:285-290
-
(1999)
Biochem Biophys Res Commun
, vol.265
, pp. 285-290
-
-
Sharan, C.1
Hamilton, N.M.2
Parl, A.K.3
Singh, P.K.4
Chaudhuri, G.5
-
28
-
-
0037112882
-
Relative contribution of variation within the APOC3/A4/A5 gene cluster in determining plasma triglycerides
-
Talmud PJ, Hawe E, Martin S, Olivier M, Miller GJ, Rubin EM, Pennacchio LA, Humphries SE (2002) Relative contribution of variation within the APOC3/A4/A5 gene cluster in determining plasma triglycerides. Hum Mol Genet 11:3039-3046
-
(2002)
Hum Mol Genet
, vol.11
, pp. 3039-3046
-
-
Talmud, P.J.1
Hawe, E.2
Martin, S.3
Olivier, M.4
Miller, G.J.5
Rubin, E.M.6
Pennacchio, L.A.7
Humphries, S.E.8
-
29
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
-
(1993)
Mol Biol Evol
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
30
-
-
33749319983
-
The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3′-flanking region
-
10
-
Trujillo MA, Sakagashira M, Eberhardt NL (2006) The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3′-flanking region. Mol Endocrinol 20(10):2559-2575
-
(2006)
Mol Endocrinol
, vol.20
, pp. 2559-2575
-
-
Trujillo, M.A.1
Sakagashira, M.2
Eberhardt, N.L.3
-
31
-
-
0029153564
-
The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
-
Vansant G, Reynolds WF (1995) The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element. Proc Natl Acad Sci USA 92:8229-8233
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8229-8233
-
-
Vansant, G.1
Reynolds, W.F.2
-
32
-
-
2542538270
-
Haplotypes in the APOA1-C3-A4-A5 gene cluster affect plasma lipids in both humans and baboons
-
Wang QF, Liu X, O'Connell J, Peng Z, Krauss RM, Rainwater DL, VandeBerg JL, Rubin EM, Cheng JF, Pennacchio LA (2004) Haplotypes in the APOA1-C3-A4-A5 gene cluster affect plasma lipids in both humans and baboons. Hum Mol Genet 13:1049-1056
-
(2004)
Hum Mol Genet
, vol.13
, pp. 1049-1056
-
-
Wang, Q.F.1
Liu, X.2
O'Connell, J.3
Peng, Z.4
Krauss, R.M.5
Rainwater, D.L.6
Vandeberg, J.L.7
Rubin, E.M.8
Cheng, J.F.9
Pennacchio, L.A.10
-
33
-
-
0033958481
-
An Alu element from the K18 gene confers position-independent expression in transgenic mice
-
Willoughby DA, Vilalta A, Oshima RG (2000) An Alu element from the K18 gene confers position-independent expression in transgenic mice. J Biol Chem 275:759-768
-
(2000)
J Biol Chem
, vol.275
, pp. 759-768
-
-
Willoughby, D.A.1
Vilalta, A.2
Oshima, R.G.3
-
34
-
-
0025186517
-
Negative regulation of the human epsilon-globin gene by transcriptional interference: Role of an Alu repetitive element
-
Wu J, Grindlay GJ, Bushel P, Mendelsohn L, Allan M (1990) Negative regulation of the human epsilon-globin gene by transcriptional interference: role of an Alu repetitive element. Mol Cell Biol 10:1209-1216
-
(1990)
Mol Cell Biol
, vol.10
, pp. 1209-1216
-
-
Wu, J.1
Grindlay, G.J.2
Bushel, P.3
Mendelsohn, L.4
Allan, M.5
-
35
-
-
34249848791
-
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
-
Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, Lander ES (2007) Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proc Natl Acad Sci USA 104:7145-7150
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7145-7150
-
-
Xie, X.1
Mikkelsen, T.S.2
Gnirke, A.3
Lindblad-Toh, K.4
Kellis, M.5
Lander, E.S.6
-
36
-
-
0035081596
-
Transcriptional regulatory mechanisms of the human apolipoprotein genes in vitro and in vivo
-
Zannis VI, Kan HY, Kritis A, Zanni EE, Kardassis D (2001) Transcriptional regulatory mechanisms of the human apolipoprotein genes in vitro and in vivo. Curr Opin Lipidol 12:181-207
-
(2001)
Curr Opin Lipidol
, vol.12
, pp. 181-207
-
-
Zannis, V.I.1
Kan, H.Y.2
Kritis, A.3
Zanni, E.E.4
Kardassis, D.5
-
37
-
-
27744499279
-
Organizing the genome: Enhancers and insulators
-
Zhao H, Dean A (2005) Organizing the genome: enhancers and insulators. Biochem Cell Biol 83:516-524
-
(2005)
Biochem Cell Biol
, vol.83
, pp. 516-524
-
-
Zhao, H.1
Dean, A.2
|