Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar

Journal of Experimental Botany

Volumn 58, Issue 15-16, 2007, Pages 4047-4060

  Rohde, Antje ^a,b,c   Ruttink, Tom ^a,b,c   Hostyn, Vanessa ^a,b   Sterck, Lieven ^a,b   Van Driessche, Klara ^a,b   Boerjan, Wout ^a,b  

^a DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

Author keywords

cDNA AFLP; Dormancy; Gene expression; Poplar

Indexed keywords

DNA; MOLECULAR STRUCTURE; PLANTS (BOTANY); POLYMORPHISM;

APICAL BUDS; CDNA-AFLP; DORMANCY; POPLARS;

GENE EXPRESSION;

TRANSCRIPTION FACTOR;

ARTICLE; ASPEN; BACTERIAL GENE; ENERGY METABOLISM; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MICROBIOLOGY; PHYSIOLOGY; PLANT;

ENERGY METABOLISM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, BACTERIAL; GENES, PLANT; PLANT SHOOTS; POPULUS; TRANSCRIPTION FACTORS;

BACTERIA (MICROORGANISMS); POPULUS; POPULUS ALBA;

EID: 40049101580     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erm261     Document Type: Article

References (45)

1. Arora R, Rowland LJ, Tanino K. 2003. Induction and release of bud dormancy in woody perennials: a science comes of age. HortScience 38, 911-921.
2. Bachelard EP, Wightman F. 1973. Biochemical and physiological studies on dormancy release in tree buds. I. Changes in degree of dormancy, respiratory capacity, and major cell constituents in overwintering vegetative buds of Populus balsamifera. Canadian Journal of Botany 51, 2315-2326.
3. Bailey JK, Deckert R, Schweitzer JA, Rehill BJ, Lindroth RL, Gehring C, Whitham TG. 2005. Host plant genetics affect hidden ecological players: links among Populus, condensed tannins, and fungal endophyte infection. Canadian Journal of Botany 83, 356-361.
4. Bergervoet JHW, Jing H-C, van den Hout JWE, Delmondez de Castro R, Kunneman BPAM, Bino RJ, Groot SPC. 1999. Expression of beta-tubulin during dormancy induction and release in apical and axillary buds of five woody species. Physiologia Plantarum 106, 238-245.
5. Böhlenius H, Huang T, Charbonnel-Campaa L, Brunner AM, Jansson S, Strauss SH, Nilsson O. 2006. CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312, 1040-1043.
6. Breyne P, Dreesen R, Cannoot B, Rombaut D, Vandepoele K, Rombauts S, Vanderhaeghen R, Inzé D, Zabeau M. 2003. Quantitative cDNA-AFLP analysis for genome-wide expression studies. Molecular Genetics and Genomics 269, 173-179.
7. Chang S, Puryear J, Cairney J. 1993. A simple and efficient method for isolating RNA from pine trees. Plant Molecular Biology Reporter 11, 113-116.
8. Che P, Lall S, Nettleton D, Howell SH. 2006. Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiology 141, 620-637.
9. Espinosa-Ruiz A, Saxena S, Schmidt J, Mellerowicz E, Miskolczi P, Bakó L, Bhalerao RP. 2004. Differential stage-specific regulation of cyclin-dependent kinases during cambial dormancy in hybrid aspen. The Plant Journal 38, 603-615.
10. Faust M, Wang SY. 1993. Biochemical events associated with resumption of growth in temperate zone fruit trees. Acta Horticulturae 329, 257-264.
11. Horvath DP, Anderson JV, Chao WS, Foley ME. 2003. Knowing when to grow: signals regulating bud dormancy. Trends in Plant Science 8, 534-540.
12. Howe GT, Gardner G, Hackett WP, Furnier GR. 1996. Phytochrome control of short-day-induced bud set in black cottonwood. Physiologia Plantarum 97, 95-103.
13. International Union for the Protection of New Varieties of Plants. 1981. Guidelines for the conduct of tests for distinctness, homogeneity and stability: Poplar (Populus L.). Genève: UPOV, http://www.upov.int/en/ publications/tg-rom/tg021/tg_21_7.pdf).
14. Kuklinsky-Sobral J, Araújo WL, Mendes R, Geraldi IO, Pizzirani-Kleiner AA, Azevedo JL. 2004. Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environmental Microbiology 6, 1244-1251.
15. Lodewyckx C, Vangronsveld J, Porteous F, Moore ERB, Taghavi S, Mergeay M, van der Lelie D. 2002. Endophytic bacteria and their potential applications. Critical Reviews in Plant Sciences 21, 583-606.
16. McGrath KC, Dombrecht B, Manners JM, Schenk PM, Edgar CI, Maclean DJ, Scheible W-R, Udvardi MK, Kazan K. 2005. Repressor- and activator-type ethylene response factors functioning in jasmonate signaling and disease resistance identified via a genome-wide screen of Arabidopsis transcription factor gene expression. Plant Physiology 139, 949-959.
17. Mengoni A, Mocali S, Surico G, Tegli S, Fani R. 2003. Fluctuation of endophytic bacteria and phytoplasmosis in elm trees. Microbiological Research 158, 363-369.
18. Menzel A, Fabian P. 1999. Growing season extended in Europe. Nature 397, 659-659.
19. Nakano T, Suzuki K, Fujimura T, Shinshi H. 2006. Genomewide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiology 140, 411-432.
20. Nelson EA, Dickson RE. 1981. Accumulation of food reserves in cottonwood stems during dormancy induction. Canadian Journal of Forest Research 11, 145-154.
21. Nitsch JP. 1957. Growth responses of woody plants to photoperiodic stimuli. Proceedings of the American Society for Horticultural Science 70, 512-525.
22. Olsen JE, Junttila O, Nilsen J, Eriksson ME, Martinussen I, Olsson O, Sandberg G, Moritz T. 1997. Ectopic expression of oat phytochrome A in hybrid aspen changes critical daylength for growth and prevents cold acclimatization. The Plant Journal 12, 1339-1350.
23. Or E, Vilozny I, Eyal Y, Ogrodovitch A. 2000. The transduction of the signal for grape bud dormancy breaking induced by hydrogen cyanamide may involve the SNF-line protein kinase GDBRPK. Plant Molecular Biology 43, 483-494.
24. Pacey-Miller T, Scott K, Ablett E, Tingey S, Ching A, Henry R. 2003. Genes associated with the end of dormancy in grapes. Functional and Integrative Genomics 3, 144-152.
25. Porteous Moore F, Barac T, Borremans B, Oeyen L, Vangronsveld J, van der Lelie D, Campbell CD, Moore ERB. 2006. Endophytic bacterial diversity in poplar trees growing on a BTEX-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Systematic and Applied Microbiology 29, 539-556.
26. Ramakers C, Ruijter JM, Lekanne Deprez RH, Moorman AFM. 2003. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neuroscience Letters 339, 62-66.
27. Rohde A, Bhalerao RP. 2007. Plant dormancy in a perennial context. Trends in Plant Science 12, 217-223.
28. Rohde A, Boerjan W. 2001. Insights into bud development and dormancy in poplar. In: Huttunen S, Heikkilä H, Bucher J, Sundberg B, Jarvis P, Matyssek R, eds. Trends in European forest tree physiology research, cost action A6: EUROSILVA, Tree physiology, Vol. 2. Dordrecht: Kluwer Academic Publishers, 33-52.
29. Rohde A, Howe GT, Olsen JE, Moritz T, Van Montagu M, Junttila O, Boerjan W. 2000. Molecular aspects of bud dormancy in trees. In: Jain SM, Minocha SC, eds. Molecular biology of woody plants, Volume 1. Forestry sciences, Vol. 64. Dordrecht: Kluwer Academic Publishers, 89-134.
30. Rohde A, Prinsen E, De Rycke R, Engler G, Van Montagu M, Boerjan W. 2002. PtABI3 impinges on the growth and differentiation of embryonic leaves during bud set in poplar. The Plant Cell 14, 1885-1901.
31. Ruonala R, Rinne PLH, Baghour M, Moritz T, Tuominen H, Kangajärvi J. 2006. Transitions in the functioning of the shoot apical meristem in birch (Betula pendula) involve ethylene. The Plant Journal 46, 628-640.
32. Ruttink T, Arend M, Morreel K, Storme V, Rombauts S, Bhalerao R, Boerjan W, Rohde A. 2007. A molecular timetable for apical bud formation and dormancy induction in poplar. The Plant Cell 19, 2370-2390.
33. Saeed AI, Sharov V, White J, et al. 2003. TM4: a free, opensource system for microarray data management and analysis. BioTechniques 34, 374-378.
34. Sagisaka S. 1991. Occurrence of unidentified bodies that resemble 'plastid initials' in poplar cells after breaking of dormancy in midwinter. Trees 5, 143-148.
35. Schrader J, Moyle R, Bhalerao R, Hertzberg M, Lundeberg J, Nilsson P, Bhalerao RP. 2004. Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. The Plant Journal 40, 173-187.
36. Sterky F, Bhalerao RR, Unneberg P, et al. 2004. A Populus EST resource for plant functional genomics. Proceedings of the National Academy of Sciences, USA 101, 13951-13956.
37. Sylven N. 1940. Lang- och kortkagstyper av de svenska skogstraden. Long day and short day types of Swedish forest trees. Svensk Papperstidning 43, 317-324; 332-342; 350-354.
38. Tuskan GA, DiFazio SP, Jansson S, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray ex Brayshaw). Science 313, 1596-1604.
39. Ulrich K, Ulrich A, Ewald D. 2007. Diversity of endophytic bacterial communities in poplar grown under field conditions. FEMS Microbiololgy and Ecology in press.
40. Van Oevelen S, De Wachter R, Vandamme P, Robbrecht E, Prinsen E. 2002. Identification of the bacterial endosymbionts in leaf galls of Psychotria (Rubiaceae, angiosperms) and proposal of 'Candidatus Burkholderia kirkii' sp. nov. International Journal of Systematic and Evolutionary Microbiology 52, 2023-2027.
41. Vandepoele K, Van de Peer Y. 2005. Exploring the plant transcriptome through phylogenetic profiling. Plant Physiology 137, 31-42.
42. Welling A, Rinne P, Viherä-Aarnio A, Kontunen-Soppela S, Heino P, Palva ET. 2004. Photoperiod and temperature differentially regulate the expression of two dehydrin genes during overwintering of birch (Betula pubescens Ehrh.). Journal of Experimental Botany 55, 507-516.
43. Yang Z, Tian L, Latoszek-Green M, Brown D, Wu K. 2005. Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Molecular Biology 58, 585-596.
44. Yao J-L, Kops O, Lu P-J, Lu KP. 2001. Functional conservation of phosphorylation-specific prolyl isomerases in plants. Journal of Biological Chemistry 276, 13517-13523.
45. Zhang X, Friedl MA, Schaaf CB, Strahler AH. 2004. Climate controls on vegetation phenological patterns in northern mid- and high latitudes inferred from MODIS data. Global Change Biology 10, 1133-1145.