-
1
-
-
84911358336
-
Understanding ontological engineering
-
Devedžić V. Understanding ontological engineering. Commun ACM 45 (2002) 136-144
-
(2002)
Commun ACM
, vol.45
, pp. 136-144
-
-
Devedžić, V.1
-
2
-
-
40049085864
-
-
Mizoguchi R. A step towards ontological engineering. In: Proceedings of the 12th National Conference on AI of JSAI; 1998. p. 24-31.
-
Mizoguchi R. A step towards ontological engineering. In: Proceedings of the 12th National Conference on AI of JSAI; 1998. p. 24-31.
-
-
-
-
4
-
-
0034069495
-
-
The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nat Genet 2000; 25:25-9.
-
The Gene Ontology Consortium. Gene Ontology: tool for the unification of biology. Nat Genet 2000; 25:25-9.
-
-
-
-
5
-
-
0346801873
-
-
The Gene Ontology Consortium. The Gene Ontology database and informatics resource. Nucleic Acids Res 2004; 32:D258-61.
-
The Gene Ontology Consortium. The Gene Ontology database and informatics resource. Nucleic Acids Res 2004; 32:D258-61.
-
-
-
-
6
-
-
33644875286
-
-
The Gene Ontology Consortium. The Gene Ontology (GO) project in 2006. Nucleic Acids Res 2006; 34:D322-6.
-
The Gene Ontology Consortium. The Gene Ontology (GO) project in 2006. Nucleic Acids Res 2006; 34:D322-6.
-
-
-
-
7
-
-
85182287449
-
-
Smith B. Against idiosyncrasy in ontology development. In: Bennett B, Fellbaum C, editors. Proceedings of the fourth international conference on formal ontology in information science; 2006; Baltimore, USA. Amsterdam: IOS Press; 2006. p. 15-26.
-
Smith B. Against idiosyncrasy in ontology development. In: Bennett B, Fellbaum C, editors. Proceedings of the fourth international conference on formal ontology in information science; 2006; Baltimore, USA. Amsterdam: IOS Press; 2006. p. 15-26.
-
-
-
-
8
-
-
84949795127
-
-
Wouters C, Dillon T, Rahayu W, Chang E, Hameurlain A, Cicchetti R, et al. A practical walkthrough of the ontology derivation rules. In: Hameurlain A, Cicchetti R, Traunmüller R, editors. Proceedings of the 13th international conference on database and expert systems applications. Springer Verlag; 2002, pp. 259-68.
-
Wouters C, Dillon T, Rahayu W, Chang E, Hameurlain A, Cicchetti R, et al. A practical walkthrough of the ontology derivation rules. In: Hameurlain A, Cicchetti R, Traunmüller R, editors. Proceedings of the 13th international conference on database and expert systems applications. Springer Verlag; 2002, pp. 259-68.
-
-
-
-
9
-
-
35048858387
-
-
Bhatt M, Wouters C, Flahive A, Rahayu W, Taniar D. Semantic completeness in sub-ontology extraction using distributed methods. In: Lagana et al, editors. Proceedings of the international conference on computational science and its applications. Perugia, Italy: Springer; 2004. pp. 508-17.
-
Bhatt M, Wouters C, Flahive A, Rahayu W, Taniar D. Semantic completeness in sub-ontology extraction using distributed methods. In: Lagana et al, editors. Proceedings of the international conference on computational science and its applications. Perugia, Italy: Springer; 2004. pp. 508-17.
-
-
-
-
11
-
-
85142190015
-
-
Day-Richter J, Harris MA, Haendel M, The Gene Ontology OBO-Edit WG, Lewis S. OBO-Edit: an ontology editor for biologists. Bioinformatics 2007;23:2198-2200.
-
Day-Richter J, Harris MA, Haendel M, The Gene Ontology OBO-Edit WG, Lewis S. OBO-Edit: an ontology editor for biologists. Bioinformatics 2007;23:2198-2200.
-
-
-
-
12
-
-
0038349592
-
Mouse proteome analysis
-
Kanapin A., Batalov S., Davis M., Gough J., Grimmond S., Kawaji H., et al. Mouse proteome analysis. Genome Res 13 (2003) 1335-1344
-
(2003)
Genome Res
, vol.13
, pp. 1335-1344
-
-
Kanapin, A.1
Batalov, S.2
Davis, M.3
Gough, J.4
Grimmond, S.5
Kawaji, H.6
-
13
-
-
8544273758
-
Global analysis of protein sumoylation in Saccharomyces cerevisiae
-
Wohlschlegel J.A., Johnson E.S., Reed S.I., and Yates J.R. Global analysis of protein sumoylation in Saccharomyces cerevisiae. J Biol Chem 279 (2004) 45662-45668
-
(2004)
J Biol Chem
, vol.279
, pp. 45662-45668
-
-
Wohlschlegel, J.A.1
Johnson, E.S.2
Reed, S.I.3
Yates, J.R.4
-
14
-
-
33644856110
-
Improving missing values estimation in microarray data with Gene Ontology
-
Tuikkala J., Flo L., Nevalainen O., and Aittokallio T. Improving missing values estimation in microarray data with Gene Ontology. Bioinformatics 22 (2006) 556-572
-
(2006)
Bioinformatics
, vol.22
, pp. 556-572
-
-
Tuikkala, J.1
Flo, L.2
Nevalainen, O.3
Aittokallio, T.4
-
15
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams M., Celniker S., Holt R., Evans C., Gocayne J., Amanatides P., et al. The genome sequence of Drosophila melanogaster. Science 287 (2000) 2185-2195
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.1
Celniker, S.2
Holt, R.3
Evans, C.4
Gocayne, J.5
Amanatides, P.6
-
17
-
-
0041627697
-
A methodology to migrate the Gene Ontology to a description logic environment using DAML+OIL
-
Wroe C.J., et al. A methodology to migrate the Gene Ontology to a description logic environment using DAML+OIL. PSB 8 (2003) 624-635
-
(2003)
PSB
, vol.8
, pp. 624-635
-
-
Wroe, C.J.1
-
18
-
-
13444269019
-
Obol: integrating language and meaning in bio-ontologies
-
Mungall C.J. Obol: integrating language and meaning in bio-ontologies. Comp Funct Genom 5 7 (2004) 509-520
-
(2004)
Comp Funct Genom
, vol.5
, Issue.7
, pp. 509-520
-
-
Mungall, C.J.1
-
19
-
-
22044433259
-
Relations in biomedical ontologies
-
Smith B., Ceusters W., Klagges B., Kohler J., Kumar A., Lomax J., et al. Relations in biomedical ontologies. Genome Biol 6 (2006) R46
-
(2006)
Genome Biol
, vol.6
-
-
Smith, B.1
Ceusters, W.2
Klagges, B.3
Kohler, J.4
Kumar, A.5
Lomax, J.6
-
20
-
-
33747860914
-
Additional Gene Ontology structure for improved biological reasoning
-
Myhre S., Tveit H., Mollestad T., and Lægreid A. Additional Gene Ontology structure for improved biological reasoning. Bioinformatics 22 (2006) 2020-2027
-
(2006)
Bioinformatics
, vol.22
, pp. 2020-2027
-
-
Myhre, S.1
Tveit, H.2
Mollestad, T.3
Lægreid, A.4
-
21
-
-
0036756295
-
Species concepts: the basis for controversy and reconcilliation
-
Ghiselin M.T. Species concepts: the basis for controversy and reconcilliation. Fish and Fisheries 3 (2002) 151-160
-
(2002)
Fish and Fisheries
, vol.3
, pp. 151-160
-
-
Ghiselin, M.T.1
-
23
-
-
40049112508
-
-
Ereshefsky M. Species. In: Zalta EN, editor. The Stanford Encyclopedia of Philosophy. Spring 2006 edition. Available from: http://stanford.plato.edu.
-
Ereshefsky M. Species. In: Zalta EN, editor. The Stanford Encyclopedia of Philosophy. Spring 2006 edition. Available from: http://stanford.plato.edu.
-
-
-
-
24
-
-
40049095415
-
-
Koning R. Plant physiology information website: morphology and anatomy [homepage on the Internet]. Available from: http://koning.ecsu.ctstateu.edu/plants_human/morpanat.html.
-
Koning R. Plant physiology information website: morphology and anatomy [homepage on the Internet]. Available from: http://koning.ecsu.ctstateu.edu/plants_human/morpanat.html.
-
-
-
-
25
-
-
40049107226
-
-
Bittner T. Axioms for parthood and containment relations in bio-ontologies. In: Bodenreider O, editor. Proceedings of the second international workshop on formal biomedical knowledge representation; Baltimore, USA. National Center for Ontology Research; 2006. pp. 4-11.
-
Bittner T. Axioms for parthood and containment relations in bio-ontologies. In: Bodenreider O, editor. Proceedings of the second international workshop on formal biomedical knowledge representation; Baltimore, USA. National Center for Ontology Research; 2006. pp. 4-11.
-
-
-
-
26
-
-
28644432962
-
Functional anatomy: a taxonomic proposal
-
Johansson I., Smith B., Munn K., Tsikolia N., Elsner K., Ernst D., et al. Functional anatomy: a taxonomic proposal. Acta Biotheor 53 (2005) 153-166
-
(2005)
Acta Biotheor
, vol.53
, pp. 153-166
-
-
Johansson, I.1
Smith, B.2
Munn, K.3
Tsikolia, N.4
Elsner, K.5
Ernst, D.6
-
27
-
-
33646235033
-
The cornucopia of formal-ontological relations
-
Smith B., and Grenon P. The cornucopia of formal-ontological relations. Dialectica 58 (2004) 279-296
-
(2004)
Dialectica
, vol.58
, pp. 279-296
-
-
Smith, B.1
Grenon, P.2
-
28
-
-
47949090260
-
-
Smith B, Rosse C. The role of foundational relations in the alignment of biomedical ontologies. In: Fieschi M, Coeira E, Li Y-CJ, editors. Proceedings of the 11th World Congress on Medical Informatics. Amsterdam: IOS Press; 2004. pp. 444-8.
-
Smith B, Rosse C. The role of foundational relations in the alignment of biomedical ontologies. In: Fieschi M, Coeira E, Li Y-CJ, editors. Proceedings of the 11th World Congress on Medical Informatics. Amsterdam: IOS Press; 2004. pp. 444-8.
-
-
-
-
29
-
-
33846088142
-
The molecular biology database collection: 2006 update
-
Galperin M.Y. The molecular biology database collection: 2006 update. Nucleic Acids Res 34 (2006) D3-D5
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Galperin, M.Y.1
-
30
-
-
34250201123
-
GOTax: investigating biological processes and biochemical activities along the taxonomic tree
-
Schlicker A., Rahnenführer J., Albrecht M., Lengauer T., and Domingues F. GOTax: investigating biological processes and biochemical activities along the taxonomic tree. Genome Biol 8 (2007) R33
-
(2007)
Genome Biol
, vol.8
-
-
Schlicker, A.1
Rahnenführer, J.2
Albrecht, M.3
Lengauer, T.4
Domingues, F.5
-
31
-
-
33947311528
-
An evaluation of GO annotation retrieval for BiCreAtIvE and GOA
-
Camon E.B., Barrell D.G., Dimmer E.C., Lee V., Magrane M., Maslen J., et al. An evaluation of GO annotation retrieval for BiCreAtIvE and GOA. BMC Bioinform 6 (2005) S17
-
(2005)
BMC Bioinform
, vol.6
-
-
Camon, E.B.1
Barrell, D.G.2
Dimmer, E.C.3
Lee, V.4
Magrane, M.5
Maslen, J.6
-
32
-
-
34248361071
-
GOAnnotator: linking protein GO annotations to evidence text
-
Couto F.M., Silva M.J., Lee V., Dimmer E., Camon E., Apweiler R., et al. GOAnnotator: linking protein GO annotations to evidence text. J Biomed Discov Collab 1 (2006) 19
-
(2006)
J Biomed Discov Collab
, vol.1
, pp. 19
-
-
Couto, F.M.1
Silva, M.J.2
Lee, V.3
Dimmer, E.4
Camon, E.5
Apweiler, R.6
-
33
-
-
40049104609
-
-
Bodenreider O, Smith B, Burgun A. The ontology-epistemology divide: a case study in medical terminology. In: Varzi A, Vieu L, editors. Proceedings of the international conference on formal ontology and information systems. Torino, Italy: IOS Press; 2004.
-
Bodenreider O, Smith B, Burgun A. The ontology-epistemology divide: a case study in medical terminology. In: Varzi A, Vieu L, editors. Proceedings of the international conference on formal ontology and information systems. Torino, Italy: IOS Press; 2004.
-
-
-
-
34
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology
-
Camon E., Magrane M., Barrell D., Lee V., Dimmer E., Maslen J., et al. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res 32 (2004) D262-D266
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
-
35
-
-
34748903457
-
-
Ceusters W, Smith B. A realism-based approach to the evolution of biomedical ontologies. In: Proceedings of the AMIA symposium on biomedical and health informatics, Washington DC, USA; 2006.
-
Ceusters W, Smith B. A realism-based approach to the evolution of biomedical ontologies. In: Proceedings of the AMIA symposium on biomedical and health informatics, Washington DC, USA; 2006.
-
-
-
-
36
-
-
0002726244
-
On closed world data bases
-
Gallaire H., and Minker J. (Eds), Plenum Publ. Co., New York
-
Reiter R. On closed world data bases. In: Gallaire H., and Minker J. (Eds). Logic and data bases (1978), Plenum Publ. Co., New York 119-140
-
(1978)
Logic and data bases
, pp. 119-140
-
-
Reiter, R.1
-
37
-
-
40049110652
-
-
Horn LR. Contradiction. In: Zalta EN, editor. The Stanford Encyclopedia of Philosophy; 2006. Available from http://plato.stanford.edu/entries/contradiction.
-
Horn LR. Contradiction. In: Zalta EN, editor. The Stanford Encyclopedia of Philosophy; 2006. Available from http://plato.stanford.edu/entries/contradiction.
-
-
-
-
38
-
-
85182308449
-
-
Kuśnierczyk W. Nontological engineering. In: Bennett B, Fellbaum C, editors. Proceedings of the international conference on formal ontology in information systems. Amsterdam: IOS Press; 2006. pp. 39-50.
-
Kuśnierczyk W. Nontological engineering. In: Bennett B, Fellbaum C, editors. Proceedings of the international conference on formal ontology in information systems. Amsterdam: IOS Press; 2006. pp. 39-50.
-
-
-
-
39
-
-
84872930374
-
-
Smith B, Kuśnierczyk W, Schober D, Ceusters W. Towards a coherent terminology for principles-based ontology. In: Bodenreider O, editor. Proceedings of the Second International Workshop on Formal Biomedical Knowledge Representation, Baltimore, USA. National Center for Ontology Research; 2006, pp. 57-66.
-
Smith B, Kuśnierczyk W, Schober D, Ceusters W. Towards a coherent terminology for principles-based ontology. In: Bodenreider O, editor. Proceedings of the Second International Workshop on Formal Biomedical Knowledge Representation, Baltimore, USA. National Center for Ontology Research; 2006, pp. 57-66.
-
-
-
|