Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection

Journal of Virology

Volumn 82, Issue 5, 2008, Pages 2324-2329

  Ravantti, Janne J ^a   Ruokoranta, Tanja M ^a,c   Alapuranen, A Marika ^a,d   Bamford, Dennis H ^a,b  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

^c Vactech Oy   (Finland)

^d Roal Oy   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; SINGLE STRANDED RNA;

ARTICLE; BACTERIAL GROWTH; BACTERIOPHAGE; BACTERIOPHAGE PRR1; CELL FUNCTION; COMPARATIVE STUDY; GENE EXPRESSION; HOST CELL; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; RNA TRANSLATION; TRANSCRIPTION INITIATION; VIRUS INFECTION;

BACTERIOPHAGES; BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; DNA, COMPLEMENTARY; GENES, VIRAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PSEUDOMONAS AERUGINOSA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; TRANSCRIPTION, GENETIC; UP-REGULATION;

BACTERIA (MICROORGANISMS); LEVIVIRIDAE; PSEUDOMONAS AERUGINOSA;

EID: 39749162838     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01930-07     Document Type: Article

References (36)

1. Abrescia, N. G., J. J. Cockburn, J. M. Grimes, G. C. Sutton, J. M. Diprose, S. J. Butcher, S. D. Fuller, C. San Martin, R. M. Burnett, D. I. Stuart, D. H. Bamford, and J. K. Bamford. 2004. Insights into assembly from structural analysis of bacteriophage PRD1. Nature 432:68-74.
2. Allen, T. D., A. L. Dawe, and D. L. Nuss. 2003. Use of cDNA microarrays to monitor transcriptional responses of the chestnut blight fungus Cryphonectria parasitica to infection by virulence-attenuating hypoviruses. Eukaryot. Cell 2:1253-1265.
3. Allen, T. D., and D. L. Nuss. 2004. Specific and common alterations in host gene transcript accumulation following infection of the chestnut blight fungus by mild and severe hypoviruses. J. Virol. 78:4145-4155.
4. Bamford, J. K., and D. H. Bamford. 1991. Large-scale purification of membrane-containing bacteriophage PRD1 and its subviral particles. Virology 181:348-352.
5. Beremand, M. N., and T. Blumenthal. 1979. Overlapping genes in RNA phage: a new protein implicated in lysis. Cell 18:257-266.
6. Bernhardt, T. G., I. N. Wang, D. K. Struck, and R. Young. 2002. Breaking free: "protein antibiotics" and phage lysis. Res. Microbiol. 153:493-501.
7. Chen, Y., I. Golding, S. Sawai, L. Guo, and E. C. Cox. 2005. Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol. 3:1276-1282.
8. Cho, J. J., N. J. Panopoulos, and M. N. Schroth. 1975. Genetic transfer of Pseudomonas aeruginosa R factors to plant pathogenic Erwinia species. J. Bacteriol. 122:192-198.
9. Cockburn, J. J., N. G. Abrescia, J. M. Grimes, G. C. Sutton, J. M. Diprose, J. M. Benevides, G. J. Thomas, Jr., J. K. Bamford, D. H. Bamford, and D. I. Stuart. 2004. Membrane structure and interactions with protein and DNA in bacteriophage PRD1. Nature 432:122-125.
10. Daugelavièius, R., J. K. Bamford, and D. H. Bamford. 1997. Changes in host cell energetics in response to bacteriophage PRD1 DNA entry. J. Bacteriol. 179:5203-5210.
11. Duplessis, M., W. M. Russell, D. A. Romero, and S. Moineau. 2005. Global gene expression analysis of two Streptococcus thermophilus bacteriophages using DNA microarray. Virology 340:192-208.
12. Eigen, M., C. K. Biebricher, M. Gebinoga, and W. C. Gardiner. 1991. The hypercycle. Coupling of RNA and protein biosynthesis in the infection cycle of an RNA bacteriophage. Biochemistry 30:11006-11018.
13. Fauquet, M. A., M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (ed.). 2005. Virus taxonomy: VIIIth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, The Netherlands.
14. Frye, J. G., S. Porwollik, F. Blackmer, P. Cheng, and M. McClelland. 2005. Host gene expression changes and DNA amplification during temperate phage induction. J. Bacteriol. 187:1485-1492.
15. Gilligan, P. H. 1991. Microbiology of airway disease in patients with cystic fibrosis. Clin. Microbiol. Rev. 4:35-51.
16. Govan, J. R., and V. Deretic. 1996. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiol. Rev. 60:539-574.
17. Holloway, B. W. 1969. Genetics of Pseudomonas. Bacteriol. Rev. 33:419-443.
18. Hoyle, B. D., and J. W. Costerton. 1991. Bacterial resistance to antibiotics: the role of biofilms. Prog. Drug Res. 37:91-105.
19. Luke, K., A. Radek, X. Liu, J. Campbell, M. Uzan, R. Haselkorn, and Y. Kogan. 2002. Microarray analysis of gene expression during bacteriophage T4 infection. Virology 299:182-191.
20. Manna, D., A. M. Breier, and N. P. Higgins. 2004. Microarray analysis of transposition targets in Escherichia coli: the impact of transcription. Proc. Natl. Acad. Sci. USA 101:9780-9785.
21. Marathe, R., Z. Guan, R. Anandalakshmi, H. Zhao, and S. P. Dinesh-Kumar. 2004. Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray. Plant Mol. Biol. 55:501-520.
22. Olsen, R. H., and P. Shipley. 1973. Host range and properties of the Pseudomonas aeruginosa R factor R1822. J. Bacteriol. 113:772-780.
23. Olsen, R. H., J. S. Siak, and R. H. Gray. 1974. Characteristics of PRD1, a plasmid-dependent broad-host-range DNA bacteriophage. J. Virol. 14:689-699.
24. Olsen, R. H., and D. D. Thomas. 1973. Characteristics and purification of PRRl, an RNA phage specific for the broad-host-range Pseudomonas R1822 drug resistance plasmid. J. Virol. 12:1560-1567.
25. Pansegrau, W., E. Lanka, P. T. Barth, D. H. Figurski, D. G. Guiney, D. Haas, D. R. Helinski, H. Schwab, V. A. Stanisich, and C. M. Thomas. 1994. Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysis. J. Mol. Biol. 239:623-663.
26. Piersanti, S., Y. Martina, G. Cherubini, D. Avitabile, and I. Saggio. 2004. Use of DNA microarrays to monitor host response to virus and virus-derived gene therapy vectors. Am. J. Pharmacogenomics 4:345-356.
27. Poranen, M. M., J. J. Ravantti, A. M. Grahn, R. Gupta, P. Auvinen, and D. H. Bamford. 2006. Global changes in cellular gene expression during bacteriophage PRD1 infection. J. Virol. 80:8081-8088.
28. Ruokoranta, T. M., A. M. Grahn, J. J. Ravantti, M. M. Poranen, and D. H. Bamford. 2006. Complete genome sequence of the broad-host-range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with alloleviviruses. J. Virol. 80:9326-9330.
29. Schuster, M., C. P. Lostroh, T. Ogi, and E. P. Greenberg. 2003. Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J. Bacteriol. 185:2066-2079.
30. Senthil, G., H. Liu, V. G. Puram, A. Clark, A. Stromberg, and M. M. Goodin. 2005. Specific and common changes in Nicotiana benthamiana gene expression in response to infection by enveloped viruses. J. Gen. Virol. 86:2615-2625.
31. Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406: 959-964.
32. van Duin, J. 1988. Single-stranded RNA bacteriophages, p. 117-167. In R. Calendar (ed.), The bacteriophages. Plenum Press, New York, NY.
33. van Duin, J., and N. Tsareva. 2004. Single-stranded RNA phages, p. 175-196. In R. Calendar (ed.), The bacteriophages, 2nd ed. Oxford University Press, Oxford, United Kingdom.
34. Wagner, V. E., D. Bushnell, L. Passador, A. I. Brooks, and B. H. Iglewski. 2003. Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment. J. Bacteriol. 185:2080-2095.
35. Whitham, S. A., S. Quan, H. S. Chang, B. Cooper, B. Estes, T. Zhu, X. Wang, and Y. M. Hou. 2003. Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants. Plant J. 33:271-283.
36. Young, I., I. Wang, and W. D. Roof. 2000. Phages will out: strategies of host cell lysis. Trends Microbiol. 8:120-128.