Processing sites involved in intron splicing of Armillaria natural product genes

Mycological Research

Volumn 112, Issue 2, 2008, Pages 216-224

  Misiek, Mathias ^a   Hoffmeister, Dirk ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

Author keywords

Basidiomycota; Biosynthesis; Coprinopsis cinerus; Genomics; Secondary metabolites

Indexed keywords

FUNGAL PROTEIN;

FUNGUS; GENE; GENOMICS; HOMOLOGY; METABOLISM; SECONDARY METABOLITE;

AGARICALES; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; FUNGAL GENE; GENETICS; INTRON; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; RNA SPLICING; SEQUENCE ALIGNMENT;

AGARICALES; AMINO ACID SEQUENCE; FUNGAL PROTEINS; GENES, FUNGAL; INTRONS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; RNA SPLICE SITES; RNA SPLICING; SEQUENCE ALIGNMENT;

ARMILLARIA; ARMILLARIA MELLEA; BASIDIOMYCOTA; COPRINOPSIS;

EID: 39749132198     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2007.10.011     Document Type: Article

References (41)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (1997) 3389-3402
2. Amrani N., Sachs M.S., and Jacobson A. Early nonsense: mRNA decay solves a translational problem. Nature Reviews, Molecular Cell Biology 7 (2006) 415-425
3. Ayer W.A., and Macaulay J.B. Metabolites of the honey mushroom, Armillaria mellea. Canadian Journal of Chemistry 65 (1987) 7-14
4. Baldrian P. Fungal laccases - occurence and properties. FEMS Microbiology Reviews 30 (2006) 215-242
5. Bouveng H.O., Fraser R.N., and Lindberg B. Polysaccharides elaborated by Armillaria mellea (Tricholomataceae) - part II. Carbohydrate Research 4 (1967) 20-31
6. Burns C., Gregory K.E., Kirby M., Cheung M.K., Riquelme M., Elliott T.J., Challen M.P., Bailey A., and Foster G.D. Efficient GFP expression in the mushrooms Agaricus bisporus and Coprinus cinereus requires introns. Fungal Genetics and Biology 42 (2005) 191-199
7. Cairney J.W., Jennings D.H., and Veltkamp C.J. Structural differentiation in maturing rhizomorphs of Armillaria mellea (Tricholomatales). Nova Hedwigia 46 (1988) 1-25
8. Coetzee M.P., Wingfield B.D., Bloomer P., Ridley G.S., Kile G.A., and Wingfield M.J. Phylogenetic relationships of Australian and New Zealand Armillaria species. Mycologia 93 (2001) 887-896
9. Coleman J.E. Zinc proteins: enzymes, storage proteins, transcription factors, and replication Proteins. Annual Review of Biochemistry 61 (1992) 897-946
10. Cremin P., Donnelly D.M., Wolfender J.L., and Hostettmann K. Liquid chromatographic-thermospray mass spectrometric analysis of sesquiterpenes of Armillaria (Eumycota: Basidiomycotina) species. Journal of Chromatography A 710 (1995) 273-285
11. Del Sorbo G., Schoonbeek H.J., and De Waard M.A. Fungal transporters involved in efflux of natural toxic compounds and fungicides. Fungal Genetics and Biology 30 (2000) 1-15
12. Donnelly D.M., Sanada S., O'Reilly J., Polonsky J., Prangé T., and Pascard C. Isolation and structure (X-ray analysis) of the orsellinate of armillol, a new antibacterial metabolite from Armillaria mellea. Journal of the Chemical Society, Chemical Communications (1982) 135-137
13. Donnelly D.M., Konishi T., Dunne O., and Cremin P. Sesquiterpene aryl esters from Armillaria tabescens. Phytochemistry 44 (1997) 1473-1478
14. Eliahu N., Igbaria A., Rose M.S., Horwitz B.A., and Lev S. Melanin biosynthesis in the maize pathogen Cochliobolus heterostrophus depends on two mitogen-activated protein kinases, Chk1 and Mps1, and the transcription factor Cmr1. Eukaryotic Cell 6 (2007) 421-429
15. 6 zinc cluster protein regulating mycotoxin biosynthesis. Molecular Microbiology 28 (1998) 1355-1365
16. Frandsen R.J., Nielsen N.J., Maolanon N., Sørensen J.C., Olsson S., Nielsen J., and Giese H. The biosynthetic pathway for aurofusarin in Fusarium graminearum reveals a close link between the naphthoquinones and naphthopyrones. Molecular Microbiology 61 (2006) 1069-1080
17. Fraser R.N., and Lindberg B. Polysaccharides elaborated by Armillaria mellea (Tricholomataceae) - part I. Carbohydrate Research 4 (1967) 12-19
18. Giniger E., Varnum S.M., and Ptashne M. Specific DNA binding of GAL4, a positive regulatory protein of yeast. Cell 40 (1985) 767-774
19. Hartig R. Vorläufige Mittheilung über den Parasitismus von Agaricus melleus und dessen Rhizomorphen. Botanische Zeitung 31 (1873) 295-297
20. Hewald S., Linne U., Scherer M., Marahiel M.A., Kämper J., and Bölker M. Identification of a gene cluster for biosynthesis of mannosylerythritol lipids in the basidiomycetous fungus Ustilago maydis. Applied and Environmental Microbiology 72 (2006) 5469-5477
21. Hoffmeister D., and Keller N.P. Natural products of filamentous fungi: enzymes, genes, and their regulation. Natural Product Reports 24 (2007) 393-416
22. Keller N.P., and Hohn T.M. Metabolic pathway gene clusters in filamentous fungi. Fungal Genetics and Biology 21 (1997) 17-29
23. Kilaru S., Hoegger P.J., and Kües U. The laccase multi-gene family in Coprinopsis cinerea has seventeen different members that divide into two distinct subfamilies. Current Genetics 50 (2006) 45-60
24. Mao Y., Varoglu M., and Sherman D.H. Molecular characterization and analysis of the biosynthetic gene cluster for the antitumor antibiotic mitomycin C from Streptomyces lavendulae NRRL 2564. Chemistry and Biology 6 (1999) 251-263
25. Midland S.L., Izac R.R., Wing R.M., Zaki A.I., Munnecke D.E., and Sims J.J. Melleolide, a new antibiotic from Armillaria mellea. Tetrahedron Letters 23 (1982) 2515-2518
26. Pao S.S., Paulsen I.T., and Saier Jr. M.H. Major facilitator superfamily. Microbiology and Molecular Biology Reviews 62 (1998) 1-34
27. Peipp H., and Sonnenbichler J. Occurance of antibiotic compounds in cultures of Armillaria ostoyae growing in the presence of an antagonistic fungus or host cell plant. Biological Chemistry Hoppe-Seyler 373 (1992) 675-683
28. Piel J., Hoang K., and Moore B.S. Cloning, sequencing and analysis of the enterocin biosynthesis gene cluster from the marine isolate 'Streptomyces maritimus': evidence for the derailment of an aromatic polyketide synthase. Chemistry and Biology 7 (2000) 943-955
29. 6 zinc cluster proteins. Science 261 (1993) 909-911
30. Rizzo D.M., Blanchette R.A., and Palmer M.A. Biosorption of metal ions by Armillaria rhizomorphs. Canadian Journal of Botany 70 (1992) 1515-1520
31. Sambrook J., and Russell D.W. Molecular Cloning: a Laboratory Manual. 3rd edn (2000), Cold Spring Harbor Laboratory Press, Cold Spring Harbour, New York
32. Scholtmeijer K., Wösten H.A.B., Springer J., and Wessels J.G.H. Effect of introns and AT-rich sequences on expression of the bacterial hygromycin B resistance gene in the basidiomycete Schizophyllum commune. Applied and Environmental Microbiology 67 (2001) 481-483
33. Shaw CG, Kile GA, (Eds) 1991. Armillaria Root Disease. [Agriculture Handbook No. 691.] United States Department of Agriculture, Washington, DC.
34. Sieber S.A., and Marahiel M.A. Molecular mechanisms underlying nonribosomal peptide synthesis: approaches to new antibiotics. Chemical Reviews 105 (2005) 715-738
35. Stanke M., and Morgenstern B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Research 33 (2005) W465-W467
36. Suresh Kumar S.V., Phale P.S., Durani S., and Wangikar P.P. Combined sequence and structure analysis of the fungal laccase family. Biotechnology and Bioengineering 83 (2003) 386-394
37. Tainter F.H., and Baker F.A. Principles of Forest Pathology (1996), Wiley, Chichester
38. 6 binuclear cluster DNA-binding motifs and regulate transcription of melanin biosynthesis genes in a developmentally specific manner. Molecular Microbiology 38 (2000) 940-954
39. Tusnády G.E., and Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 17 (2001) 849-850
40. Welzel K., Eisfeld K., Antelo L., Anke T., and Anke H. Characterization of the ferrichrome A biosynthetic gene cluster in the homobasidiomycete Omphalotus olearius. FEMS microbiology letters 249 (2005) 157-163
41. Zhang S., Monahan B.J., Tkacz J.S., and Scott B. Indole-diterpene gene cluster from Aspergillus flavus. Applied and Environmental Microbiology 70 (2004) 6875-6883