Microbacterium ginsengisoli sp. nov., a β-glucosidase-producing bacterium isolated from soil of a ginseng field

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 2, 2008, Pages 429-433

  Park, Min Ju ^a   Kim, Myung Kyum ^a   Kim, Ho Bin ^a   Im, Wan Taek ^b   Yi, Tae Hoo ^a   Kim, Se Young ^a   Soung, Nak Kyun ^c   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL ENZYME; BACTERIAL PROTEIN; BACTERIAL RNA; BETA GLUCOSIDASE; DIAMINO ACID; DNA C; DNA PRIMASE; FATTY ACID; MENAQUINONE; ORNITHINE; RHAMNOSE; RIBOSOME RNA; RNA 16S;

ACTINOBACTERIA; AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; GENE SEQUENCE; GINSENG; GRAM POSITIVE BACTERIUM; HETEROTROPH; KOREA; MICROBACTERIUM ARBORESCENS; MICROBACTERIUM GINSENGISOLI; MICROBACTERIUM IMPERIALE; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS; SOIL MICROFLORA; SPECIES COMPARISON;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETA-GLUCOSIDASE; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; MOLECULAR SEQUENCE DATA; PANAX; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); MICROBACTERIUM; MICROBACTERIUM ARBORESCENS; MICROBACTERIUM IMPERIALE; PANAX GINSENG; POSIBACTERIA;

EID: 39749102806     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65226-0     Document Type: Article

References (28)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. pp. 196, 843. Edited by L. C. Parks: Boca Raton, FL: CRC Press.
2. Buck J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Collins, M. D. & Bradbury, J. F. (1992). The genera Agromyces, Aureobacterium, Clavibacter, Curtobacterium, and Microbacterium. In The Prokaryotes, 2nd edn, pp. 1355-1368. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. Berlin: Springer.
4. Collins, M. D., Jones, D. & Kroppenstedt, R. M. (1983). Reclassification of Brevibacterium imperiale (Steinhaus) and "Corynebacterium laeva-niformans" (Dias and Bhat) in a redefined genus Microbacterium (Orla-Jensen), as Microbacterium imperiale comb. nov. and Microbacterium laevaniformans nom. rev., comb. nov. Syst Appl Microbiol 4, 65-78.
5. Ezaki, T., Hashimoto Y. & Yabuuchi E (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1985). Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
9. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lopoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
10. Im, W.-T., Jung, H.-M., Cui, Y.-S., Liu, Q.-M., Zhang, S.-L & Lee, S.-T. (2005). Cultivation of the three hundreds of bacterial species from soil of a ginseng field and mining the novel lineage bacteria. In Proceedings of the International Meeting of the Federation of Korean Microbiological Societies, abstract A035, pp. 169. Seoul: Federation of Korean Microbiological Societies.
11. Kim, M. K., Im, W.-T, Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a β-glucosidase producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
12. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
13. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
14. Kouker, G. & Jaeger, K.-E (1987). Specific and sensitive plate assay for bacterial lipase. Appl Environ Microbiol 53, 211-213.
15. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Moore, D. D. & Dowhan, D. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology, pp. 2-11. Edited by F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley.
18. Mudarris, M., Austin, B., Segers, P., Vancanneyt, M., Hoste, B. & Bernardet, J. F. (1994). Flavobacterium scophthalmum sp. nov., a pathogen of turbot (Scophthalmus maximus L.). Int J Syst Bacteriol 44, 447-453.
19. Orla-Jensen, S. (1919). The Lactic Acid Bacteria. Copenhagen: Host & Sons.
20. Park H. Y., Kim, K. K., Jin, L & Lee, S.-T. (2006). Microbacterium paludicola sp. nov., a novel xylanolytic bacterium isolated from swamp forest. Int J Syst Evol Microbiol 56, 535-539.
21. Rivas, P, Trujillo, M. E. Sánchez, M., Mateos, P. F., Martínez-Molina, E. & Velázquez, E (2004). Microbacterium ulmi sp. nov., a xylanolytic, phosphate-solubilizing bacterium isolated from sawdust of Ulmus nigra. Int J Syst Evol Microbiol 54, 513-517.
22. Saitou, N. & Nei, M. (1987). The neighbor-joining method a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
23. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
24. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
25. Takeuchi, M. & Hataono, K. (1998). Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48, 739-447.
26. Ten, L N., Im, W.-T. Kim, M.-K, Kang, M.-S. & Lee, S.-T. (2004). Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J Microbiol Methods 56, 375-382.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The-CLUSTAL_X windows interface: flexible strategies for multiple: sequence alignment aided by quality analysis tools. Nucleic Acids. Res 25, 4876-4882.
28. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 461-464.