메뉴 건너뛰기




Volumn 24, Issue 3, 2008, Pages 387-394

Characterization of the predominant bacterial population of different mangrove rhizosphere soils using 16S rRNA gene-based single-strand conformation polymorphism (SSCP)

Author keywords

16S r DNA gene; Bacillus; Mangroves; PCR SSCP

Indexed keywords

BIOLOGICAL MATERIALS; GENES; POLYMORPHISM; SOILS;

EID: 39649086920     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-007-9487-3     Document Type: Article
Times cited : (21)

References (39)
  • 1
    • 51249174563 scopus 로고
    • Response of microbial populations to environmental disturbance
    • Atlas RM, Horowitz A, Krichevsky M, Bej AK (1991) Response of microbial populations to environmental disturbance. Microbial Ecol 22:249-256
    • (1991) Microbial Ecol , vol.22 , pp. 249-256
    • Atlas, R.M.1    Horowitz, A.2    Krichevsky, M.3    Bej, A.K.4
  • 2
    • 0032108626 scopus 로고    scopus 로고
    • Inoculants of plant growth-promoting bacteria for use in agriculture
    • Bashan Y (1998) Inoculants of plant growth-promoting bacteria for use in agriculture. Biotechnol Adv 16:729-770
    • (1998) Biotechnol Adv , vol.16 , pp. 729-770
    • Bashan, Y.1
  • 3
    • 0001882190 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam BJ, Caetano-Anolles G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 80:81-84
    • (1991) Anal Biochem , vol.80 , pp. 81-84
    • Bassam, B.J.1    Caetano-Anolles, G.2    Gresshoff, P.M.3
  • 4
    • 3142667969 scopus 로고    scopus 로고
    • Variability in the origin of carbon substrates for bacterial communities in mangrove sediments
    • Bouillon S, Dahdouh-Guebas TMNKF, Baeyens W, Dehairs F (2004) Variability in the origin of carbon substrates for bacterial communities in mangrove sediments. FEMS Microbiol Ecol 49:171-179
    • (2004) FEMS Microbiol Ecol , vol.49 , pp. 171-179
    • Bouillon, S.1    Tmnkf, D.2    Baeyens, W.3    Dehairs, F.4
  • 5
    • 0000976087 scopus 로고
    • Relations between the pollen spectra and the vegetation of a South Indian mangrove
    • Caratini C, Blasco F, Thanikaimoni G (1973) Relations between the pollen spectra and the vegetation of a South Indian mangrove. Pollen Spores 15:281-292
    • (1973) Pollen Spores , vol.15 , pp. 281-292
    • Caratini, C.1    Blasco, F.2    Thanikaimoni, G.3
  • 6
    • 0002563277 scopus 로고
    • A new acid-tolerant nitrogen fixing bacterium associated with sugar cane
    • Cavalcant VA, Dobereiner J (1988) A new acid-tolerant nitrogen fixing bacterium associated with sugar cane. Plant Soil 108:23-31
    • (1988) Plant Soil , vol.108 , pp. 23-31
    • Cavalcant, V.A.1    Dobereiner, J.2
  • 8
    • 16844364530 scopus 로고    scopus 로고
    • Planomicrobium chinense sp nov isolated from coastal sediment and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb nov and Planomicrobium alkanoclasticum comb Nov
    • Dai X, Wang YN, Wang BJ, Liu SJ, Zhou YG (2005) Planomicrobium chinense sp nov isolated from coastal sediment and transfer of Planococcus psychrophilus and Planococcus alkanoclasticus to Planomicrobium as Planomicrobium psychrophilum comb nov and Planomicrobium alkanoclasticum comb Nov. Int J Syst Evol Microbiol 55:699-702
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 699-702
    • Dai, X.1    Wang, Y.N.2    Wang, B.J.3    Liu, S.J.4    Zhou, Y.G.5
  • 9
    • 0037370971 scopus 로고    scopus 로고
    • Temporally dependent C N and P dynamics associated with the decay of Rhizophora mangle L leaf litter in oligotrophic mangrove wetlands of the Southern Everglades
    • Davis SE, Corronado-Molina C, Daniel L, Childers, Day JW (2003) Temporally dependent C N and P dynamics associated with the decay of Rhizophora mangle L leaf litter in oligotrophic mangrove wetlands of the Southern Everglades. Aqua Bot 75:199-215
    • (2003) Aqua Bot , vol.75 , pp. 199-215
    • Davis, S.E.1    Corronado-Molina, C.2    Daniel, L.3    Childers4    Day, J.W.5
  • 10
    • 0029660854 scopus 로고    scopus 로고
    • Surface properties and motility of Rhizobium and Azospirillum in relation to plant root attachment
    • De Troch P, Vanderleyden J (1996) Surface properties and motility of Rhizobium and Azospirillum in relation to plant root attachment. Microbial Ecol 32:149-169
    • (1996) Microbial Ecol , vol.32 , pp. 149-169
    • De Troch, P.1    Vanderleyden, J.2
  • 11
    • 0035135104 scopus 로고    scopus 로고
    • Isolation and characterization of a novel hydrocarbon-degrading Gram-positive bacterium isolated from intertidal beach sediment and description of Planococcus alkanoclasticus sp nov
    • Engelhardt MA, Daly K, Swannell RPJ, Head IM (2001) Isolation and characterization of a novel hydrocarbon-degrading Gram-positive bacterium isolated from intertidal beach sediment and description of Planococcus alkanoclasticus sp nov. J Appl Microbiol 90:237-247
    • (2001) J Appl Microbiol , vol.90 , pp. 237-247
    • Engelhardt, M.A.1    Daly, K.2    Swannell, R.P.J.3    Head, I.M.4
  • 12
    • 0035032241 scopus 로고    scopus 로고
    • Spatial and temporal variability in benthic processes along a mangrove-sea grass transect near the Bangrong mangrove
    • Holmer M, Andersen F, Kristensen E, Thongtham N (2001) Spatial and temporal variability in benthic processes along a mangrove-sea grass transect near the Bangrong mangrove. Thailand Wetlands Ecol Manage 9:141-158
    • (2001) Thailand Wetlands Ecol Manage , vol.9 , pp. 141-158
    • Holmer, M.1    Andersen, F.2    Kristensen, E.3    Thongtham, N.4
  • 14
    • 39649102498 scopus 로고    scopus 로고
    • Hundred years of Pichavaram mangrove forest
    • ENVIS Special Publication Annamalai University India
    • Kannupandi T, Kannan R (1998) Hundred years of Pichavaram mangrove forest In: An Anthology of Indian mangroves In: ENVIS Special Publication Annamalai University India p 66
    • (1998) An Anthology of Indian Mangroves , pp. 66
    • Kannupandi, T.1    Kannan, R.2
  • 17
    • 0034622802 scopus 로고    scopus 로고
    • Carbon and nitrogen mineralization in sediments of the Bangrong mangrove area Phuket Thailand
    • Kristensen E, Andersen F, Holmer M, Thongtham N (2000) Carbon and nitrogen mineralization in sediments of the Bangrong mangrove area Phuket Thailand. Aqua Microbial Ecol 22:199-213
    • (2000) Aqua Microbial Ecol , vol.22 , pp. 199-213
    • Kristensen, E.1    Andersen, F.2    Holmer, M.3    Thongtham, N.4
  • 18
    • 0036203424 scopus 로고    scopus 로고
    • Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland
    • Kuske CR, Ticknor LO, Miller ME, Dunbar JM, Davis JA, Barns SM, Belna J (2002) Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland. Appl Environ Microbiol 68:1854-1863
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1854-1863
    • Kuske, C.R.1    Ticknor, L.O.2    Miller, M.E.3    Dunbar, J.M.4    Davis, J.A.5    Barns, S.M.6    Belna, J.7
  • 19
    • 0029530279 scopus 로고
    • Biogeochemistry of Mangrove Soil Organic Matter: A Comparison between Rhizophora and Avicennia Soils in South-eastern Brazil Estuarine Coastal and Shelf
    • Lacerda LD, Ittekkot V, Patchineelam SR (1995) Biogeochemistry of Mangrove Soil Organic Matter: a Comparison Between Rhizophora and Avicennia Soils in South-eastern Brazil Estuarine Coastal and Shelf. Science 40:713-720
    • (1995) Science , vol.40 , pp. 713-720
    • Lacerda, L.D.1    Ittekkot, V.2    Patchineelam, S.R.3
  • 20
    • 0029786831 scopus 로고    scopus 로고
    • Non-radioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand Conformation polymorphism
    • Lee DH, Zo YG, Kim SJ (1996) Non-radioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand Conformation polymorphism. Appl Environ Microbiol 62:3112-3120
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3112-3120
    • Lee, D.H.1    Zo, Y.G.2    Kim, S.J.3
  • 21
    • 23944518010 scopus 로고    scopus 로고
    • Bacterial diversity and carbonate precipitation in the giant microbialites from the highly alkaline Lake Van Turkey
    • Lopez-Garcia P, Kazmierczak J, Benzerara K, Kempe S, Guyot F, Moreira D (2005) Bacterial diversity and carbonate precipitation in the giant microbialites from the highly alkaline Lake Van Turkey. Extremophiles 9:263-274
    • (2005) Extremophiles , vol.9 , pp. 263-274
    • Lopez-Garcia, P.1    Kazmierczak, J.2    Benzerara, K.3    Kempe, S.4    Guyot, F.5    Moreira, D.6
  • 22
    • 8144231103 scopus 로고    scopus 로고
    • Stable-isotope probing of microorganisms thriving at thermodynamic limits: Syntrophic propionate oxidation in flooded soil
    • Lueders T, Pommerenke B, Friedrich MW (2004) Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil. Appl Environ Microbiol 70:5778-5786
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5778-5786
    • Lueders, T.1    Pommerenke, B.2    Friedrich, M.W.3
  • 23
    • 0347631848 scopus 로고
    • Typical differences between the chemical characteristics of Rhizophora and Avicennia mangrove forest soils in South Andamans
    • Mongias AD, Ganeshamurthy AN (1989) Typical differences between the chemical characteristics of Rhizophora and Avicennia mangrove forest soils in South Andamans. Agrochimica 33:1-7
    • (1989) Agrochimica , vol.33 , pp. 1-7
    • Mongias, A.D.1    Ganeshamurthy, A.N.2
  • 25
    • 0041912944 scopus 로고    scopus 로고
    • Isolation and characterization of filamentous bacteria from paper mill slimes
    • Oppong D, King VM, Bowen JA (2003) Isolation and characterization of filamentous bacteria from paper mill slimes. Int Biodeterior Biodegradat 52:53-62
    • (2003) Int Biodeterior Biodegradat , vol.52 , pp. 53-62
    • Oppong, D.1    King, V.M.2    Bowen, J.A.3
  • 26
    • 0024595101 scopus 로고
    • Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms
    • Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proce Nat Acad Sci 86:2766-2770
    • (1989) Proce Nat Acad Sci , vol.86 , pp. 2766-2770
    • Orita, M.1    Iwahana, H.2    Kanazawa, H.3    Hayashi, K.4    Sekiya, T.5
  • 27
    • 3843058988 scopus 로고    scopus 로고
    • Development of specific rhizosphere bacterial communities in relation to plant species nutrition and soil type
    • Petra M, Crowley D, Yang CH (2004) Development of specific rhizosphere bacterial communities in relation to plant species nutrition and soil type. Plant Soil 261:199-208
    • (2004) Plant Soil , vol.261 , pp. 199-208
    • Petra, M.1    Crowley, D.2    Yang, C.H.3
  • 28
    • 0000119763 scopus 로고
    • Mobilization of phosphorus in soil in connection with the vital activity of some of the microbial species
    • Pikovskaya RI (1948) Mobilization of phosphorus in soil in connection with the vital activity of some of the microbial species. Mikrobiologiya 17:362-370
    • (1948) Mikrobiologiya , vol.17 , pp. 362-370
    • Pikovskaya, R.I.1
  • 30
    • 0035431143 scopus 로고    scopus 로고
    • Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling
    • Schmalenberger A, Schwieger F, Tebbe CC (2001) Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Appl Environ Microbiol 67:3557-3563
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3557-3563
    • Schmalenberger, A.1    Schwieger, F.2    Tebbe, C.C.3
  • 31
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F, Tebbe CC (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64:4870-4876
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 32
    • 0032937670 scopus 로고    scopus 로고
    • Moving waves of bacterial populations and total organic carbon along roots of wheat
    • Semenov AM, van Bruggen AH, Zelenev VV (1999) Moving waves of bacterial populations and total organic carbon along roots of wheat. Microbial Ecol 37:116-128
    • (1999) Microbial Ecol , vol.37 , pp. 116-128
    • Semenov, A.M.1    Van Bruggen, A.H.2    Zelenev, V.V.3
  • 33
    • 0026292598 scopus 로고
    • Keystone species and mangrove forest dynamics: The influence of burrowing by crabs on soil nutrient status and forest productivity Estuarine Coastal Shelf
    • Smith TJ, Boto KG, Frusher SD, Giddins RL (1991) Keystone species and mangrove forest dynamics: the influence of burrowing by crabs on soil nutrient status and forest productivity Estuarine Coastal Shelf. Science 33:419-432
    • (1991) Science , vol.33 , pp. 419-432
    • Smith, T.J.1    Boto, K.G.2    Frusher, S.D.3    Giddins, R.L.4
  • 34
    • 0025683623 scopus 로고
    • Structural changes and associated microbial activity accompanying decomposition of mangrove leaves in Mgeni Estuary
    • Steinke TD, Barnabas AD, Samuru R (1990) Structural changes and associated microbial activity accompanying decomposition of mangrove leaves in Mgeni Estuary. South African J Bot 56:39-48
    • (1990) South African J Bot , vol.56 , pp. 39-48
    • Steinke, T.D.1    Barnabas, A.D.2    Samuru, R.3
  • 36
    • 0030620268 scopus 로고    scopus 로고
    • Biodiversity and plant litter: Experimental evidence which does not support the view that enhanced species richness improves ecosystem function
    • Wardle DA, Bonner KI, Nicholson KS (1997) Biodiversity and plant litter: experimental evidence which does not support the view that enhanced species richness improves ecosystem function. Oikos 79:247-258
    • (1997) Oikos , vol.79 , pp. 247-258
    • Wardle, D.A.1    Bonner, K.I.2    Nicholson, K.S.3
  • 37
    • 0030843564 scopus 로고    scopus 로고
    • Nitrogen enrichment during decomposition of mangrove leaf litter in an east African coastal lagoon (Kenya): Relative importance of biological nitrogen fixation
    • Woitchik AF, Ohowa B, Kazungu JM, Rao RG, Goeyens L, Dehairs F (1997) Nitrogen enrichment during decomposition of mangrove leaf litter in an east African coastal lagoon (Kenya): relative importance of biological nitrogen fixation. Bioqeochemistry 39:15-35
    • (1997) Bioqeochemistry , vol.39 , pp. 15-35
    • Woitchik, A.F.1    Ohowa, B.2    Kazungu, J.M.3    Rao, R.G.4    Goeyens, L.5    Dehairs, F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.