Genetic structure and evidence of a local bottleneck in moose in sweden

Journal of Wildlife Management

Volumn 72, Issue 2, 2008, Pages 411-415

  Charlier, Johan ^a   Laikre, Linda ^a   Ryman, Nils ^a  

^a STOCKHOLM UNIVERSITY   (Sweden)

Author keywords

Alces alces; Bottleneck; Conservation genetics; Game species; Genetic variation; Spatial autocorrelation; Spatial genetic structure

Indexed keywords

AUTOCORRELATION; CONSERVATION GENETICS; DEER; GENE FLOW; GENETIC STRUCTURE; GENETIC VARIATION; PATCH SIZE; POPULATION BOTTLENECK; POPULATION GENETICS; SUBPOPULATION;

ALCES ALCES; MAMMALIA;

EID: 39449104743     PISSN: 0022541X     EISSN: None     Source Type: Journal    
DOI: 10.2193/2007-122     Document Type: Article

References (43)

1. Allendorf, F. W., and N. Ryman. 2002. The role of genetics in population viability analysis. Pages 50-85 in S. R. Beissinger and D. R. McCullough, editors. Population viability analysis. University of Chicago Press, Chicago, Illinois, USA.
2. Baccus, R., N. Ryman, M. H. Smith, C. Reuterwall, and C. Cameron. 1983. Genetic variability and differentiation of large grazing mammals. Journal of Mammalogy 64:109-120.
3. Buchanan, F. C., S. M. Galloway, and A. M. Crawford. 1994. Ovine microsatellites at the OarFCB5, OarFCB19, OarFCB20, OarFCB48, OarFCB129 and OarFCB226 loci. Animal Genetics 25:60.
4. Cederlund, G., and H. Sand. 1994. Home-range size in relation to age and sex in moose. Journal of Mammalogy 75:1005-1012.
5. Chesser, R. K., C. Reuterwall, and N. Ryman. 1982. Genetic differentiation of Scandinavian moose Alces alces populations over short geographical distances. Oikos 39:125-130.
6. Comer, C. E., J. C. Kilgo, G. J. D'Angelo, T. C. Glenn, and K. V. Miller. 2005. Fine-scale genetic structure and social organization in female white-tailed deer. Journal of Wildlife Management 69:332-344.
7. Cornuet, J.-M., and G. Luikart. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014.
8. Cornuet, J-M., S. Piry, G. Luikart, A. Estoup, and M. Solignac. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153:1989-2000.
9. Côté, S. D., J. F. Dallas, F. Marshall, R. J. Irvine, R. Langvatn, and S. D. Albon. 2002. Microsatellite DNA evidence for genetic drift and philopatry in Svalbard reindeer. Molecular Ecology 11:1923-1930.
10. Coulon, A., G. Guillot, J-F. Cosson, J. M. A. Angibault, S. Aulagnier, B. Cargnelutti, M. Galan, and A. J. M. Hewison. 2006. Genetic structure is influenced by landscape features: empirical evidence from a roe deer population. Molecular Ecology 15:1669-1679.
11. Crow, J. F., and M. Kimura. 1970. An introduction to population genetics theory. Harper and Row, New York, New York, USA.
12. Doerner, K. C., W. Braden, J. Cork, T. Cunningham, A. Rice, B. J. Furman, and D. McElroy. 2005. Population genetics of resurgence: white-tailed deer in Kentucky. Journal of Wildlife Management 69:345-355.
13. Ellegren, H., S. Mikko, K. Wallin, and L. Andersson. 1996. Limited polymorphism at major histocompatibility complex (MHC) loci in the Swedish moose A. alces. Molecular Ecology 5:3-9.
14. Falush, D., M. Stephens, and J. K. Pritchard. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587.
15. Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). 〈http://www2.unil.ch/popgen/ softwares/fstat.htm〉. Accessed 14 Feb 2007.
16. Harris, R. B., W. A. Wall, and F. W. Allendorf. 2002. Genetic consequences of hunting: what do we know and what should we do? Wildlife Society Bulletin 30:634-643.
17. Hermansson, N., and J. Boëthius, editors. 1975. Älgen: Näring och miljö-Jakt och vård. En kursbok utgiven av Svenska jägareförbundet, Proprius förlag, Sweden. [In Swedish.]
18. Hicks, J. F., J. L. Rachlow, O. E. Rhodes, C. L. Williams, Jr., and L. P. Waits. 2007. Reintroduction and genetic structure: rocky mountain elk in Yellowstone and the western states. Journal of Mammalogy 88:129-138.
19. Hulme, D. J., J. P. Silk, J. M. Redwin, W. Barendse, and K. J. Beh. 1994. Ten polymorphic ovine microsatellites. Animal Genetics 25:434-435.
20. Jägareförbundet. 2007. Swedish Association for Hunting and Wildlife Management home page. 〈http://www.jagareforbundet.se〉. Accessed 10 July 2007.
21. Laikre, L., S. Palm, and N. Ryman. 2005. Genetic population structure of fishes: implications for coastal zone management. Ambio 34:111-119.
22. Laikre, L., and N. Ryman. 1996. Effects on intraspecific biodiversity from harvesting and enhancing natural populations. Ambio 25:504-509.
23. Leberg, P. L. 2002. Estimating allelic richness: effects of sample size and bottlenecks. Molecular Ecology 11:2445-2449.
24. Luikart, G., F. W. Allendorf, J.-M. Cornuet, and W. B. Sherwin. 1998. Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity 89:238-247.
25. Moore, S. S., K. Byrne, K. T. Berger, W. Barendse, F. McCarthy, J. E. Womack, and D. J. S. Hetzel. 1994. Characterization of 65 bovine microsatellites. Mammalian Genome 5:84-90.
26. Peakall, R., and P. E. Smouse. 2001. GenAlEx v5: genetic analysis in Excel. Population genetic software for teaching and research. 〈http://www.anu.edu.au/BoZo/GenAlEx/〉. Accessed 20 Sep 2005.
27. Piry, S., G. Luikart, and J.-M. Cornuet. 1999. BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data. The Journal of Heredity 90:502-503.
28. Postma, E., W. F. van Hooft, S. E. van Wieren, and L. van Breukelen. 2001. Microsatellite variation in Dutch roe deer (Capreolus capreolus) populations. Netherlands Journal of Zoology 51:85-95.
29. Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
30. Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248-249.
31. Reuterwall, C. 1980. Genetic variation in a large game species, the moose (Alces alces): patterns of differentiation and some management implications. Dissertation, University of Stockholm, Stockholm, Sweden.
32. Ryman, N., R. Baccus, C. Reuterwall, and M. H. Smith. 1981. Effective population size, generation interval, and potential loss of genetic variability in game species under different hunting regimes. Oikos 36:257-266.
33. Ryman, N., G. Beckman, G. Bruun-Petersen, and C. Reuterwall. 1977. Variability of red cell enzymes and genetic implications of management policies in Scandinavian moose (Alces alces). Hereditas 85:157-162.
34. Ryman, N., and S. Palm. 2006. POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Molecular Ecology Notes 6:600-602.
35. Ryman, N., S. Palm, C. André, G. R. Carvalho, T. G. Dahlgren, P. E. Jorde, L. Laikre, L. C. Larsson, A. Palmé, and D. E. Ruzzante. 2006. Power for detecting genetic divergence: differences between statistical methods and marker loci. Molecular Ecology 15:2031-2045.
36. Ryman, N., C. Reuterwall, K. Nygrén, and T. Nygrén. 1980. Genetic variation and differentiation in Scandinavian moose (Alces alces): are large mammals monomorphic? Evolution 34:1037-1049.
37. Røed, K. H. 1998. Microsatellite variation in Scandinavian Cervidae using primers derived from Bovidae. Hereditas 129:19-25.
38. Smouse, P. E., and R. Peakall. 1999. Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity 82:561-573.
39. Swarbrick, P. A., A. B. Dietz, J. E. Womack, and A. M. Crawford. 1992. Ovine and bovine dinucleotide repeat polymorphism at the MAF46 locus. Animal Genetics 23:182.
40. van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills, and P. Shipley. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4:535-538.
41. Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
42. Wilson, G. A., C. Strobeck, L. Wu, and J. W. Coffin. 1997. Characterization of microsatellite loci in caribou Rangifer tarandus, and their use in other artiodactyls. Molecular Ecology 6:697-699.
43. Wilson, P. J., S. Grewal, A. Rodgers, R. Rempel, J. Saquet, H. Hristienko, F. Burrows, R. Peterson, and B. N. White. 2003. Genetic variation and population structure of moose (Alces alces) at neutral and functional DNA loci. Canadian Journal of Zoology 81:670-683.