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Volumn 118, Issue 3, 2004, Pages 147-157

A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome

Author keywords

Allele specific primer extension; Capillary electrophoresis; Mitochondrial DNA; Multiplex PCR; Single nucleotide polymorphism

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

EID: 3943071529     PISSN: 09379827     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00414-004-0428-5     Document Type: Article
Times cited : (124)

References (35)
  • 1
    • 0002260414 scopus 로고    scopus 로고
    • Mitochondrial DNA sequence analysis - Validation and use for forensic casework
    • Holland MM, Parsons TJ (1999) Mitochondrial DNA sequence analysis - validation and use for forensic casework. Forensic Sci Rev 11:22-50
    • (1999) Forensic Sci Rev , vol.11 , pp. 22-50
    • Holland, M.M.1    Parsons, T.J.2
  • 2
    • 5044219883 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms over the entire mtDNA genome that increase the forensic power of testing in Caucasians
    • DOI: s00414-004-0427-6
    • Coble MD, Just RS, O'Callaghan JE, Letmanyi IH, Peterson CT, Parsons TJ (2004) Single nucleotide polymorphisms over the entire mtDNA genome that increase the forensic power of testing in Caucasians. Int J Legal MedDOI: s00414-004-0427-6
    • (2004) Int J Legal Med
    • Coble, M.D.1    Just, R.S.2    O'Callaghan, J.E.3    Letmanyi, I.H.4    Peterson, C.T.5    Parsons, T.J.6
  • 3
    • 0042934312 scopus 로고    scopus 로고
    • Rapid screening of mtDNA coding region SNPs for the identification of Caucasian haplogroups
    • Brandstätter A, Parsons TJ, Niederstätter H, Parson W (2003) Rapid screening of mtDNA coding region SNPs for the identification of Caucasian haplogroups. Int J Legal Med 117:291-298
    • (2003) Int J Legal Med , vol.117 , pp. 291-298
    • Brandstätter, A.1    Parsons, T.J.2    Niederstätter, H.3    Parson, W.4
  • 4
    • 0034952656 scopus 로고    scopus 로고
    • Increasing the forensic discrimination of mitochondrial DNA testing through analysis of the entire mitochondrial DNA genome
    • Parsons TJ, Coble MD (2001) Increasing the forensic discrimination of mitochondrial DNA testing through analysis of the entire mitochondrial DNA genome. Croatian Med J 42:304-309
    • (2001) Croatian Med J , vol.42 , pp. 304-309
    • Parsons, T.J.1    Coble, M.D.2
  • 5
    • 0033017359 scopus 로고    scopus 로고
    • Analysis of mtDNA HVRII in several human populations using an immobilised SSO probe hybridisation assay
    • Comas D, Reynolds R, Sajantila A (1999) Analysis of mtDNA HVRII in several human populations using an immobilised SSO probe hybridisation assay. Eur J Hum Genet 7:459-468
    • (1999) Eur J Hum Genet , vol.7 , pp. 459-468
    • Comas, D.1    Reynolds, R.2    Sajantila, A.3
  • 6
    • 0035071595 scopus 로고    scopus 로고
    • Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification
    • Ye F, Li MS, Taylor JD et al. (2001) Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum Mutat 17:305-316
    • (2001) Hum Mutat , vol.17 , pp. 305-316
    • Ye, F.1    Li, M.S.2    Taylor, J.D.3
  • 7
    • 0035092024 scopus 로고    scopus 로고
    • Flow cytometric platform for high-throughput single nucleotide polymorphism analysis
    • Taylor JD, Briley D, Nguyen Q et al. (2001) Flow cytometric platform for high-throughput single nucleotide polymorphism analysis. Biotechniques 30:661-669
    • (2001) Biotechniques , vol.30 , pp. 661-669
    • Taylor, J.D.1    Briley, D.2    Nguyen, Q.3
  • 9
    • 0033006003 scopus 로고    scopus 로고
    • Allelic discrimination using fluorogenic probes and the 5′ nuclease assay
    • Livak KJ (1999) Allelic discrimination using fluorogenic probes and the 5′ nuclease assay. Genet Anal 14:143-149
    • (1999) Genet Anal , vol.14 , pp. 143-149
    • Livak, K.J.1
  • 10
    • 0034917719 scopus 로고    scopus 로고
    • High-throughput genotyping with single nucleotide polymorphisms
    • Ranade K, Chang MS, Ting CT et al. (2001) High-throughput genotyping with single nucleotide polymorphisms. Genome Res 11:1262-1268
    • (2001) Genome Res , vol.11 , pp. 1262-1268
    • Ranade, K.1    Chang, M.S.2    Ting, C.T.3
  • 11
    • 0011729715 scopus 로고    scopus 로고
    • Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry
    • Paracchini S, Arredi B, Chalk R, Tyler-Smith C (2002) Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry. Nucleic Acids Res 30:e27
    • (2002) Nucleic Acids Res , vol.30
    • Paracchini, S.1    Arredi, B.2    Chalk, R.3    Tyler-Smith, C.4
  • 12
    • 0038243876 scopus 로고    scopus 로고
    • Genotyping single nucleotide polymorphisms by mass spectrometry
    • Tost J, Gut IG (2002) Genotyping single nucleotide polymorphisms by mass spectrometry. Mass Spectrom Rev 21:388-418
    • (2002) Mass Spectrom Rev , vol.21 , pp. 388-418
    • Tost, J.1    Gut, I.G.2
  • 13
    • 0037176210 scopus 로고    scopus 로고
    • Genotyping single-nucleotide polymorphisms by matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry
    • Sauer S, Gut IG (2002) Genotyping single-nucleotide polymorphisms by matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry. J Chromatogr B AnalTechnol Biomed Life Sci 782:73-87
    • (2002) J Chromatogr B AnalTechnol Biomed Life Sci , vol.782 , pp. 73-87
    • Sauer, S.1    Gut, I.G.2
  • 14
    • 0031734601 scopus 로고    scopus 로고
    • High level multiplex genotyping by MALDI-TOF mass spectrometry
    • Ross P, Hall L, Smirnov I, Haff L (1998) High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat Biotechnol 16:1347-1351
    • (1998) Nat Biotechnol , vol.16 , pp. 1347-1351
    • Ross, P.1    Hall, L.2    Smirnov, I.3    Haff, L.4
  • 16
    • 0033824460 scopus 로고    scopus 로고
    • Determination of single-nucleotide polymorphisms by real-time pyrophosphate DNA sequencing
    • Alderborn A, Kristofferson A, Hammerling U (2000) Determination of single-nucleotide polymorphisms by real-time pyrophosphate DNA sequencing. Genome Res 10:1249-1258
    • (2000) Genome Res , vol.10 , pp. 1249-1258
    • Alderborn, A.1    Kristofferson, A.2    Hammerling, U.3
  • 17
    • 0036910901 scopus 로고    scopus 로고
    • Polymorphism in the mitochondrial cytochrome b gene in Koreans: An additional marker for individual identification
    • Lee SD, Lee YS, Lee JB (2002) Polymorphism in the mitochondrial cytochrome b gene in Koreans: an additional marker for individual identification. Int J Legal Med 116:74-77
    • (2002) Int J Legal Med , vol.116 , pp. 74-77
    • Lee, S.D.1    Lee, Y.S.2    Lee, J.B.3
  • 19
    • 0030059841 scopus 로고    scopus 로고
    • Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing
    • Tully G, Sullivan KM, Nixon P, Stones RE, Gill P (1996) Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing. Genomics 34:107-113
    • (1996) Genomics , vol.34 , pp. 107-113
    • Tully, G.1    Sullivan, K.M.2    Nixon, P.3    Stones, R.E.4    Gill, P.5
  • 21
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Krawetz S, Misener S (eds) Humana Press, Totowa, NJ
    • Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp 365-386
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 22
    • 0034929692 scopus 로고    scopus 로고
    • Capillary electrophoresis as a tool for optimization of multiplex PCR reactions
    • Butler JM, Ruitberg CM, Vallone PM (2001) Capillary electrophoresis as a tool for optimization of multiplex PCR reactions. Fresenius J Anal Chem 369:200-205
    • (2001) Fresenius J Anal Chem , vol.369 , pp. 200-205
    • Butler, J.M.1    Ruitberg, C.M.2    Vallone, P.M.3
  • 23
    • 0037526212 scopus 로고    scopus 로고
    • Multiplex PCR design strategy used for the simultaneous amplification of 10 Y chromosome short tandem repeat (STR) loci
    • Schoske R, Vallone PM, Ruitberg CM, Butler JM (2003) Multiplex PCR design strategy used for the simultaneous amplification of 10 Y chromosome short tandem repeat (STR) loci. Anal Bioanal Chem 375:333-343
    • (2003) Anal Bioanal Chem , vol.375 , pp. 333-343
    • Schoske, R.1    Vallone, P.M.2    Ruitberg, C.M.3    Butler, J.M.4
  • 25
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia J (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci U S A 95:1460-1465
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 1460-1465
    • Santalucia, J.1
  • 26
    • 0035371621 scopus 로고    scopus 로고
    • Quality control of PCR primers used in multiplex STR amplification reactions
    • Butler JM, Devaney JM, Marino MA, Vallone PM (2001) Quality control of PCR primers used in multiplex STR amplification reactions. Forensic Sci Int 119:87-96
    • (2001) Forensic Sci Int , vol.119 , pp. 87-96
    • Butler, J.M.1    Devaney, J.M.2    Marino, M.A.3    Vallone, P.M.4
  • 27
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor CR, Warshaw MM, Shapiro H (1970) Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers 9:1059-1077
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 28
    • 0035048369 scopus 로고    scopus 로고
    • Improved mtDNA sequence analysis of forensic remains using a "mini-primer set" amplification strategy
    • Gabriel MN, Huffine EF, Ryan JH, Holland MM, Parsons TJ (2001) Improved mtDNA sequence analysis of forensic remains using a "mini-primer set" amplification strategy. J Forensic Sci 46:247-253
    • (2001) J Forensic Sci , vol.46 , pp. 247-253
    • Gabriel, M.N.1    Huffine, E.F.2    Ryan, J.H.3    Holland, M.M.4    Parsons, T.J.5
  • 29
    • 0024466725 scopus 로고
    • A new genetic polymorphism in the 16S ribosomal RNA gene of human mitochondrial DNA
    • Mehta AB, Vulliamy T, Gordon-Smith EC, Luzzatto L (1989) A new genetic polymorphism in the 16S ribosomal RNA gene of human mitochondrial DNA. Ann Hum Genet 53:303-310
    • (1989) Ann Hum Genet , vol.53 , pp. 303-310
    • Mehta, A.B.1    Vulliamy, T.2    Gordon-Smith, E.C.3    Luzzatto, L.4
  • 30
    • 0026409821 scopus 로고
    • Normal variants of human mitochondrial DNA and translation products: The building of a reference database
    • Marzuki S, Noer AS, Letrit P, Thyagarajan D, Kapsa R, Utthanaphol P, Byrne E (1991) Normal variants of human mitochondrial DNA and translation products: the building of a reference database. Hum Genet 88:139-145
    • (1991) Hum Genet , vol.88 , pp. 139-145
    • Marzuki, S.1    Noer, A.S.2    Letrit, P.3    Thyagarajan, D.4    Kapsa, R.5    Utthanaphol, P.6    Byrne, E.7
  • 32
    • 0036598550 scopus 로고    scopus 로고
    • SNPstream UHT: Ultra-high throughput SNP genotyping for pharmacogenomics and drug discovery
    • Bell PA, Chaturvedi S, Gelfand CA et al. (2002) SNPstream UHT: ultra-high throughput SNP genotyping for pharmacogenomics and drug discovery. Biotechniques Suppl :70-77
    • (2002) Biotechniques Suppl , pp. 70-77
    • Bell, P.A.1    Chaturvedi, S.2    Gelfand, C.A.3
  • 34
  • 35
    • 0033851835 scopus 로고    scopus 로고
    • A sensitive DGGE assay reveals a high frequency of heteroplasmy in hypervariable region one of the human mitochondrial DNA control region
    • Tully LA, Parsons TJ, Steighner RJ, Holland MM, Marino MA, Prenger VL (2000) A sensitive DGGE assay reveals a high frequency of heteroplasmy in hypervariable region one of the human mitochondrial DNA control region. Am J Hum Genet 67:432-443
    • (2000) Am J Hum Genet , vol.67 , pp. 432-443
    • Tully, L.A.1    Parsons, T.J.2    Steighner, R.J.3    Holland, M.M.4    Marino, M.A.5    Prenger, V.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.