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Volumn 103, Issue 9-10, 2007, Pages 381-390

A framework for the informed normalization of printed microarrays

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ASSESSMENT METHOD; GENOME; RESEARCH;

EID: 39149111945     PISSN: 00382353     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (1)

References (20)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a cDNA microarray
    • Schena M., Shalon D., Davis R. and Brown PO. (1995). Quantitative monitoring of gene expression patterns with a cDNA microarray. Science 270, 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.3    Brown, P.O.4
  • 2
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. (2002). Microarray data normalization and transformation. Nature Genetics Suppl. 32, 496-501.
    • (2002) Nature Genetics Suppl , vol.32 , pp. 496-501
    • Quackenbush, J.1
  • 3
    • 9144268360 scopus 로고    scopus 로고
    • Empirical evaluation of data transformations and ranking statistics for microarray analysis
    • Qin L. and Kerr F. (2004). Empirical evaluation of data transformations and ranking statistics for microarray analysis. Nucleic Acids Res. 32, 5471-5479.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5471-5479
    • Qin, L.1    Kerr, F.2
  • 4
  • 6
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B.M., Irizarry R.A., Astrand M. and Speed T.P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 7
    • 0034862548 scopus 로고    scopus 로고
    • Hartemink A., Gifford D., Jaakkola T. and Young R. (2001). Maximum likelihood estimation of optimal scaling factors for expression array normalization. SPIE International Symposium on Biomedical Optics 2001 (BiOS01). In Microarrays: Optical Technologies and Informatics, eds M. Bittner, Y. Chen, A. Dorsel and E. Dougherty, Proc. SPIE, 4266, 132-140.
    • Hartemink A., Gifford D., Jaakkola T. and Young R. (2001). Maximum likelihood estimation of optimal scaling factors for expression array normalization. SPIE International Symposium on Biomedical Optics 2001 (BiOS01). In Microarrays: Optical Technologies and Informatics, eds M. Bittner, Y. Chen, A. Dorsel and E. Dougherty, Proc. SPIE, 4266, 132-140.
  • 9
    • 13244292280 scopus 로고    scopus 로고
    • A robust two-way semi-linear model for normalization of cDNA microarray data
    • Wang D., Huang J., Xie H., Manzella L. and Soares M.B. (2005). A robust two-way semi-linear model for normalization of cDNA microarray data. BMC Bioinformatics 6, 14.
    • (2005) BMC Bioinformatics , vol.6 , pp. 14
    • Wang, D.1    Huang, J.2    Xie, H.3    Manzella, L.4    Soares, M.B.5
  • 10
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • Smyth G.K. and Speed T.P. (2003). Normalization of cDNA microarray data. Methods 31(4), 265-273.
    • (2003) Methods , vol.31 , Issue.4 , pp. 265-273
    • Smyth, G.K.1    Speed, T.P.2
  • 12
    • 0642309738 scopus 로고    scopus 로고
    • Evaluation of normalization methods for microarray data
    • Park T., Yi S., Lee S., Lee Y. and Simon R. (2003). Evaluation of normalization methods for microarray data. BMC Bioinformatics 4, 33.
    • (2003) BMC Bioinformatics , vol.4 , pp. 33
    • Park, T.1    Yi, S.2    Lee, S.3    Lee, Y.4    Simon, R.5
  • 14
    • 25444446813 scopus 로고    scopus 로고
    • Evaluation of normalization methods for cDNA microarray data by k-NN classification
    • Wu W., Xing E.P., Myers C., Mian I.S. and Bissell J.M. (2005). Evaluation of normalization methods for cDNA microarray data by k-NN classification. BMC Bioinformatics 6, 191.
    • (2005) BMC Bioinformatics , vol.6 , pp. 191
    • Wu, W.1    Xing, E.P.2    Myers, C.3    Mian, I.S.4    Bissell, J.M.5
  • 16
    • 84947318637 scopus 로고
    • Locally weighted regression: An approach to regression analysis by local fitting
    • Cleveland W.S. and Devlin S.J. (1988). Locally weighted regression: An approach to regression analysis by local fitting. J. Am. Stat. Assoc. 83, 596-610.
    • (1988) J. Am. Stat. Assoc , vol.83 , pp. 596-610
    • Cleveland, W.S.1    Devlin, S.J.2
  • 18
    • 19644375092 scopus 로고    scopus 로고
    • Collateral missing value imputation: A new robust missing value estimation algorithm for microarray data
    • Sehgal M.S.B., Gondal I. and Dooley L.S. (2005). Collateral missing value imputation: a new robust missing value estimation algorithm for microarray data. Bioinformatics 21, 2417-2423.
    • (2005) Bioinformatics , vol.21 , pp. 2417-2423
    • Sehgal, M.S.B.1    Gondal, I.2    Dooley, L.S.3
  • 19
    • 19644370395 scopus 로고    scopus 로고
    • The treatment of missing values and its effect in the classifier accuracy
    • eds D. Banks et al, pp, Springer-Verlag, Berlin, Heidelberg
    • Acuna E. and Rodriguez C. (2004). The treatment of missing values and its effect in the classifier accuracy. In Classification, Clustering and Data Mining Applications, eds D. Banks et al., pp. 639-648. Springer-Verlag, Berlin, Heidelberg.
    • (2004) Classification, Clustering and Data Mining Applications , pp. 639-648
    • Acuna, E.1    Rodriguez, C.2
  • 20
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear models for microarray data
    • eds R. Gentleman, V. Carey, S. Dudoit, R. Irizarry and W. Huber, pp, Springer, New York
    • Smyth G.K. (2005). Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions using R and Bioconductor, eds R. Gentleman, V. Carey, S. Dudoit, R. Irizarry and W. Huber, pp. 397-420. Springer, New York.
    • (2005) Bioinformatics and Computational Biology Solutions using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.