A tool for evaluating ontology alignment strategies

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4380 LNCS, Issue , 2007, Pages 182-202

  Lambrix, Patrick ^a   Tan, He ^a  

^a LINKÖPING UNIVERSITY   (Sweden)

Author keywords

Alignment; Evaluation; Ontologies

Indexed keywords

INFORMATION TECHNOLOGY; SEMANTIC WEB;

ALIGNMENT STRATEGIES; OVERLAPPING INFORMATION;

ONTOLOGY;

EID: 39149092071     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-70664-9_7     Document Type: Conference Paper

References (45)

1. Ashpole B (2004) Ontology translation protocol (ontrapro). Proceedings of the Performance Metrics for Intelligent Systems Workshop.
2. Bard JL, Kaufman MH, Dubreuil C, Brune RM, Burger A, Baldock RA, Davidson DR (1998) An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature. Mechanisms of Development, 74:111-120.
3. Chen B, Tan H, Lambrix P (2006) Structure-based filtering for ontology alignment. Proceedings of the IEEE WETICE Workshop on Semantic Technologies in Collaborative Applications.
4. Collins F, Green E, Guttmacher A, Guyer M (2003) A vision for the future of genomics research. Nature, 422:835-847.
5. Doan A, Madhavan J, Domingos P, Halevy A (2003) Ontology matching: A machine learning approach. Staab, Studer (eds) Handbook on Ontologies in Information Systems, pp 397-416, Springer.
6. Ehrig M, Haase P, Stojanovic N, Hefke M (2005) Similarity for Ontologies - A Comprehensive Framework. Proceedings of the 13th European Conference on Information Systems.
7. Euzenat J (2005) An API for Ontology alignment (version 1.3).
8. Euzenat J, Loup D, Touzani D, Valtchev D (2004) Ontology Alignment with OLA. Proceedings of the 3rd International Workshop on Evaluation of Ontology-based Tools.
9. Euzenat J, Stuckenschmidt H, Yatskevich M (2005) Introduction to the Ontology Alignment Evaluation 2005. Proceedings of the K-CAP 2005 Workshop on Integrating Ontologies.
10. Euzenat J (2004) Introduction to the EON ontology alignment context. Proceedings of the 3rd International Workshop on the Evaluation of Ontology-based Tools.
11. Euzenat J (2004) An API for ontology alignment. Proceedings of the 3rd International Semantic Web Conference, pp 698-712.
12. FOAM. http://www.aifb.uni-karlsruhe.de/WBS/meh/foam/
13. The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nature Genetics, 25(1):25-29. http://www.geneontology.org/.
14. Gómez-Pérez A (1999) Ontological Engineering: A state of the Art. Expert Update, 2(3):33-43.
15. Giunchiglia F, Shvaiko P, Yatskevich M (2004) S-Match: an algorithm and an implementation of semantic matching. Proceedings of the European Semantic Web Symposium, LNCS 3053, pp 61-75.
16. Hayamizu TF, Mangan M, Corradi JP, Kadin JA, Ringwald M (2005) The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. Genome Biology, 6(3):R29
17. I3CON (2004) http://www.atl.lmco.com/projects/ontology/i3con.html
18. Jena - A Semantic Web Framework for Java. http://jena.sourceforge.net/
19. Kalfoglou Y, Schorlemmer M (2003) IF-Map: an ontology mapping method based on information flow theory. Journal on Data Semantics, 1:98-127.
20. KnowledgeWeb Consortium (2004) Deliverable 2.2.4 (Specification of a methodology, general criteria, and benchmark suites for benchmarking ontology tools). http://knowledgeweb.semanticweb.org/
21. Kotis K, Vouros GA (2004) The HCONE Approach to Ontology Merging. Proceedings of the European Semantic Web Symposium, LNCS 3053, pp 137-151.
22. Lambrix P (2004) Ontologies in Bioinformatics and Systems Biology. Chapter 8 in Dubitzky W, Azuaje F (eds) Artificial Intelligence Methods and Tools for Systems Biology, pp 129-146, Springer.
23. Lambrix P, Edberg A (2003) Evaluation of ontology merging tools in bioinformatics. Proceedings of the Pacific Symposium on Biocomputing, 8:589-600.
24. Lambrix P, Tan H (2005) Merging DAML+OIL Ontologies. Barzdins, Caplinskas (eds) Databases and Information Systems, pp 249-258, IOS Press.
25. Lambrix P, Tan H (2005) A Framework for Aligning Ontologies. Proceedings of the 3rd Workshop on Principles and Practice of Semantic Web Reasoning, LNCS 3703, pp 17-31.
26. Lambrix P, Tan H (2006) SAMBO - A System for Aligning and Merging Biomedical Ontologies. Journal of Web Semantics, special issue on Semantic Web for the Life Sciences.
27. Le BT, Dieng-Kuntz R, Gandon F (2004) On ontology matching problem (for building a corporate semantic web in a multi-communities organization). Proceedings of 6th International Conference on Enterprise Information Systems.
28. Medical Subject Headings, http://www.nlm.nih.gov/mesh/
29. McGuinness D, Fikes R, Rice J, Wilder S (2000) An Environment for Merging and Testing Large Ontologies. Proceedings of the Seventh International Conference on Principles of Knowledge Representation and Reasoning, pp 483-493.
30. Mitra P, Wiederhold G (2002) Resolving terminological heterogeneity in ontologies. Proceedings of the ECAI Workshop on Ontologies and Semantic Interoperability.
31. Noy NF, Musen M (2000) PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. Proceedings of Seventeenth National Conference on Artificial Intelligence, pp 450-455.
32. Noy NF, Musen M (2001) Anchor-PROMPT: Using Non-Local Context for Semantic Matching. Proceedings of the IJCAI Workshop on Ontologies and Information Sharing, pp 63-70.
33. OBO - Open Biomedical Ontologies, http://obo.sourceforge.net/
34. OntoWeb Consortium (2002) Deliverables 1.3 (A survey on ontology tools) and 1.4 (A survey on methodologies for developing, maintaining, evaluating and reengineering ontologies), http://www.ontoweb.org
35. Prasad S, Peng Y, Finin T (2002) Using Explicit Information To Map Between Two Ontologies, Proceedings of the AAMAS Workshop on Ontologies in Agent Systems.
36. REWERSE. Backofen R, Badea M, Burger A, Fages F, Lambrix P, Nutt W, Schroeder M, Soliman S, Will S (2004) State-of-the-art in Bioinformatics. REWERSE Deliverable A2-D1.
37. REWERSE. Backofen R, Badea M, Barahona P, Burger A, Dawelbait G, Doms A, Fages F, Hotaran A, Jakonienė V, Krippahl L, Lambrix P, McLeod K, Möller S, Nutt W, Olsson B, Schroeder M, Soliman S, Tan H, Tilivea D, Will S (2005) Usage of bioinformatics tools and identification of information sources. REWERSE Deliverable A2-D2.
38. Stevens R, Goble C, Bechhofer S (2000) Ontology-based knowledge representation for bioinformatics. Briefings in Bioinformatics, 1(4):398-414.
39. Stumme G, Mädche A (2001) FCA-Merge: Bottom-up merging of ontologies. Proceedings of the 17th International Joint Conference on Artificial Intelligence, pp 225-230.
40. Su XM, Hakkarainen S, Brasethvik T (2004) Semantic enrichment for improving systems interoperability. Proceedings of the ACM Symposium on Applied Computing, pp 1634-1641.
41. Takai-Igarashi T, Nadaoka Y, Kaminuma T (1998) A Database for Cell Signaling Networks. Journal of Computational Biology, 5(4):747-754.
42. Tan H, Jakonienė V, Lambrix P, Aberg J, Shahmehri S (2006) Alignment of biomedical ontologies using life science literature, Proceedings of the International Workshop on Knowledge Discovery in Life Science Literature, LNBI 3886, pp 1-17.
43. Takai-Igarashi T and Takagi T (2000), SIGNAL-ONTOLOGY: Ontology for Cell Signalling. Genome Informatics, 11:440-441.
44. UMLS. http://www.nlm.nih.gov/research/umls/about_umls.html
45. WordNet. http://wordnet.princeton.edu/