Genotyping of hepatitis B virus by restriction enzyme analysis;Hepatit B virusunun restriksiyon enzim analizi ile tiplendirilmesi

Mikrobiyoloji Bulteni

Volumn 40, Issue 3, 2006, Pages 215-223

  Aksoy, Aziz ^a   Özdarendeli, Aykut ^a  

^a FIRAT UNIVERSITY   (Turkey)

Author keywords

HBV genotyping; Hepatitis B virus; PCR; RFLP

Indexed keywords

PRIMER DNA; VIRUS DNA;

ARTICLE; CHEMISTRY; CLASSIFICATION; FEMALE; GENETICS; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMAN; MALE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; TURKEY (REPUBLIC); VIROLOGY;

DNA PRIMERS; DNA, VIRAL; FEMALE; GENOTYPE; HEPATITIS B; HEPATITIS B VIRUS; HUMANS; MALE; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RESTRICTION MAPPING; TURKEY;

EID: 39049196112     PISSN: 03749096     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Lindh M, Gonzalez JE, Norkrans G, Horal P. Genotyping of hepatitis B virus by restriction pattern analysis of a pre-S amplicon. J Virol Methods 1998; 72: 163-74.
2. Arauz-Ruiz P, Norder H, Robertson BH, Magnius LO. Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America. J Gen Virol 2002; 83: 2059-73.
3. Kato H, Gish RG, Bzowej N, et al. Eight genotypes (A-H) of hepatitis B virus infecting patients from San Francisco and their demographic, clinical, and virological characteristics. J Clin Microbiol 2002; 40: 1207-9.
4. Kiyan M. Hepatit B virusu, s: 86-120. Kiliǧturgay K, Badur S (ed), Viral Hepatit. 2001. Viral Hepatit Savaşim Derneǧi Yayini, Istanbul.
5. Balik I. Hepatit B epidemiyolojisi, S: 91-101. Kiliǧturgay K (ed), Viral Hepatit. 1994. Nobel Tip Kitabevleri, Istanbul.
6. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual. 2001. Cold Spring Harbor Laboratory Press, NY.
7. Mizokami M, Nakano T, Orito E, et al. Hepatitis B virus genotype assignment using restriction fragment lenght polymorphism patterns. FEBS Letters 1999; 450: 66-71.
8. Kidd-Ljunggren K, Miyakawa Y, Kidd AH. Genetic variability in hepatitis B viruses. J Gen Virol 2002; 4: 1-18.
9. Mbayed VA, Lo JL, Telentra PFS, et al. Distribution of hepatitis B virus genotypes in two different pediatric populations from Argentina. J Clin Microbiol 1998; 36: 3362-5.
10. Kato H, Ruzibakiev R, Yuldasheva N, et al. Hepatitis B virus genotypes in Uzbekistan and validity of two different systems for genotyping. J Med Virol 2002; 67: 477-83.
11. Kristensen VN, Kelefiotis D, Kristensen T, Borresen-Dale AL. High-throughput methods for detection of genetic variation. Biotechniques 2001; 30: 318-22.
12. Okamoto H, Tsucla F, Sakugawa H, et al. Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes. J Gen Virol 1988; 69: 2575-83.
13. Norder H, Hammas B, Löfdahl S, Courouce AM, Magnius LO. Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains. J Gen Virol 1992; 73: 1201-8.
14. Norder H, Couroucé AM, Magnius LO. Complete genomes, phylogenetic relatedness, and structural proteins of six strains of the hepatitis B virus, four of which represent two new genotypes. Virology 1994; 198: 489-503.
15. Stuyver L, De Gendt S, Van Geyt C, et al. A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness. J Gen Virol 2000; 81: 67-74.
16. Peng L, Ding JJ, Zhang LS. Establishing a new genotyping method of hepatitis B virus by polymerase chain reaction- restriction fragment length polymorphism (PCR-RFLP) to analysis on S region and its application. Zhonghua Gan Zang Bing Za Zhi 2004; 12: 475-8.
17. Zeng GB, Wen SJ, Wang ZH, et al. A novel hepatitis B virus genotyping system by using restriction fragment length polymorphism patterns of S gene amplicons. World J Gastroenterol 2004; 10:132-7.
18. Bartholomeusz A, Schaefer S. Hepatitis B virus genotypes: comparison of genotyping methods. J Med Virol 2004; 14: 3-16.
19. Lee WM. Hepatitis B virus infection. J Clin Microbiol 1997; 337: 733-45.
20. Moraes MT, Gomes SA, Niel C. Sequence analysis of pre S/S gene of hepatitis B virus strains of genotypes A, D, and F isolated in Brasil. Arch Virol 1996; 141: 1767-73.
21. Clarke B, Bloor S. Molecular genotyping of hepatitis B virus. J Clin Virol 2002; 25: 41-5.
22. Idrees M, Khan S, Riazuddin S. Common genotypes of hepatitis B virus. Coll Physicians Surg Pak 2004; 14: 344-7.
23. Leblebicioglu H, Eroglu C, and Members of the Hepatitis Study Group. Acute hepatitis B virus infection in Turkey, epidemiology and genotype distribution. J Clin Microbiol 2004; 10:537-41.
24. Külah C, Yalinay Çirak M. Genotyping of Turkish hepatitis B virus isolates based on the sequencing of the S regions. 2nd Molecular and Diagnostic Microbiology Congress. April 21-25, 2002, Kemer, Antalya-Turkey. Congress Proceedings and Programme, p: 146.
25. Misirlioǧlu M, Kayin E, Akman E, Tuncer S. Hepatitis B virus genotypes and viral load analysis in pre and post vaccination sera from carrier children. 2nd Molecular and Diagnostic Microbiology Congress. April 21-25, 2002, Kemer, Antalya-Turkey. Congress Proceedings and Programme, p: 152.
26. Bozdayi AM, Bozkaya H, Türkyilmaz AR, et al. Nucleotide divergences in the core promoter and precore region of genotype D hepatitis B virus in patients with persistently elevated or normal ALT levels. J Clin Virol 2001; 21: 91-101.
27. Senturker Guldas N, Abacioglu YH. S-gene sequences and genotype-related restriction sites in hepatitis B virus carriers in Turkey. J Infect Dis 2004; 32:344-9.
28. Lok AS. Chronic hepatitis B. N Engl J Med 2002; 346:1682-3.