-
1
-
-
29444442484
-
Switches in bacteriophage lambda development
-
Oppenheim A.B., Kobiler O., Stavans J., Court D.L., and Adhya S. Switches in bacteriophage lambda development. Annu. Rev. Genet. 39 (2005) 409-429
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 409-429
-
-
Oppenheim, A.B.1
Kobiler, O.2
Stavans, J.3
Court, D.L.4
Adhya, S.5
-
2
-
-
7444241154
-
-
Cold Spring Harbor Press, Cold Spring Harbor, NY
-
Ptashne M. A Genetic Switch (2004), Cold Spring Harbor Press, Cold Spring Harbor, NY
-
(2004)
A Genetic Switch
-
-
Ptashne, M.1
-
3
-
-
0024284650
-
Recognition of a DNA operator by the repressor of phage 434: a view at high resolution
-
Aggarwal A.K., Rodgers D.W., Drottar M., Ptashne M., and Harrison S.C. Recognition of a DNA operator by the repressor of phage 434: a view at high resolution. Science 242 (1988) 899-907
-
(1988)
Science
, vol.242
, pp. 899-907
-
-
Aggarwal, A.K.1
Rodgers, D.W.2
Drottar, M.3
Ptashne, M.4
Harrison, S.C.5
-
4
-
-
0022358385
-
A phage repressor-operator complex at 7 Å resolution
-
Anderson J.E., Ptashne M., and Harrison S.C. A phage repressor-operator complex at 7 Å resolution. Nature 316 (1985) 596-601
-
(1985)
Nature
, vol.316
, pp. 596-601
-
-
Anderson, J.E.1
Ptashne, M.2
Harrison, S.C.3
-
5
-
-
0026657433
-
Refined 1.8 Å crystal structure of the lambda repressor-operator complex
-
Beamer L.J., and Pabo C.O. Refined 1.8 Å crystal structure of the lambda repressor-operator complex. J. Mol. Biol. 227 (1992) 177-196
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 177-196
-
-
Beamer, L.J.1
Pabo, C.O.2
-
6
-
-
0024284648
-
Structure of the lambda complex at 2.5 Å resolution: details of the repressor-operator interactions
-
Jordan S.R., and Pabo C.O. Structure of the lambda complex at 2.5 Å resolution: details of the repressor-operator interactions. Science 242 (1988) 893-899
-
(1988)
Science
, vol.242
, pp. 893-899
-
-
Jordan, S.R.1
Pabo, C.O.2
-
7
-
-
0019977222
-
The operator-binding domain of lambda repressor: structure and DNA recognition
-
Pabo C.O., and Lewis M. The operator-binding domain of lambda repressor: structure and DNA recognition. Nature 298 (1982) 443-447
-
(1982)
Nature
, vol.298
, pp. 443-447
-
-
Pabo, C.O.1
Lewis, M.2
-
8
-
-
0027337534
-
The phage 434 OR2/R1-69 complex at 2.5 Å resolution
-
Shimon L.J., and Harrison S.C. The phage 434 OR2/R1-69 complex at 2.5 Å resolution. J. Mol. Biol. 232 (1993) 826-838
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 826-838
-
-
Shimon, L.J.1
Harrison, S.C.2
-
9
-
-
0035861984
-
Crystal structure of the lambda repressor C-terminal domain octamer
-
Bell C.E., and Lewis M. Crystal structure of the lambda repressor C-terminal domain octamer. J. Mol. Biol. 314 (2001) 1127-1136
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1127-1136
-
-
Bell, C.E.1
Lewis, M.2
-
10
-
-
0027949172
-
Expression, purification, and functional characterization of the carboxyl-terminal domain fragment of bacteriophage 434 repressor
-
Carlson P.A., and Koudelka G.B. Expression, purification, and functional characterization of the carboxyl-terminal domain fragment of bacteriophage 434 repressor. J. Bacteriol. 176 (1994) 6907-6914
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6907-6914
-
-
Carlson, P.A.1
Koudelka, G.B.2
-
11
-
-
0032515104
-
Carboxyl-terminal domain dimer interface mutant 434 repressors have altered dimerization and DNA binding specificities
-
Donner A.L., Paa K., and Koudelka G.B. Carboxyl-terminal domain dimer interface mutant 434 repressors have altered dimerization and DNA binding specificities. J. Mol. Biol. 283 (1998) 931-946
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 931-946
-
-
Donner, A.L.1
Paa, K.2
Koudelka, G.B.3
-
13
-
-
33344461632
-
The structural basis of cooperative regulation at an alternate genetic switch
-
Pinkett H.W., Shearwin K.E., Stayrook S., Dodd I.B., Burr T., Hochschild A., et al. The structural basis of cooperative regulation at an alternate genetic switch. Mol. Cell 21 (2006) 605-615
-
(2006)
Mol. Cell
, vol.21
, pp. 605-615
-
-
Pinkett, H.W.1
Shearwin, K.E.2
Stayrook, S.3
Dodd, I.B.4
Burr, T.5
Hochschild, A.6
-
14
-
-
0034705320
-
Crystal structure of the lambda repressor C-terminal domain provides a model for cooperative operator binding
-
Bell C.E., Frescura P., Hochschild A., and Lewis M. Crystal structure of the lambda repressor C-terminal domain provides a model for cooperative operator binding. Cell 101 (2000) 801-811
-
(2000)
Cell
, vol.101
, pp. 801-811
-
-
Bell, C.E.1
Frescura, P.2
Hochschild, A.3
Lewis, M.4
-
15
-
-
15844390948
-
Purification and self-association equilibria of the lysis-lysogeny switch proteins of coliphage 186
-
Shearwin K.E., and Egan J.B. Purification and self-association equilibria of the lysis-lysogeny switch proteins of coliphage 186. J. Biol. Chem. 271 (1996) 11525-11531
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 11525-11531
-
-
Shearwin, K.E.1
Egan, J.B.2
-
16
-
-
39049139014
-
Phages of Lactococcus lactis
-
Calendar R. (Ed), Oxford University Press, Oxford, UK
-
Brøndsted L., and Hammer K. Phages of Lactococcus lactis. In: Calendar R. (Ed). The Bacteriophages (2006), Oxford University Press, Oxford, UK 572-592
-
(2006)
The Bacteriophages
, pp. 572-592
-
-
Brøndsted, L.1
Hammer, K.2
-
17
-
-
0037708008
-
Identification of operator sites of the CI repressor of phage TP901-1: evolutionary link to other phages
-
Johansen A.H., Brøndsted L., and Hammer K. Identification of operator sites of the CI repressor of phage TP901-1: evolutionary link to other phages. Virology 311 (2003) 144-156
-
(2003)
Virology
, vol.311
, pp. 144-156
-
-
Johansen, A.H.1
Brøndsted, L.2
Hammer, K.3
-
18
-
-
0030855955
-
Design of thermolabile bacteriophage repressor mutants by comparative molecular modeling
-
Nauta A., van den B.B., Karsens H., Venema G., and Kok J. Design of thermolabile bacteriophage repressor mutants by comparative molecular modeling. Nat. Biotechnol. 15 (1997) 980-983
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 980-983
-
-
Nauta, A.1
van den, B.B.2
Karsens, H.3
Venema, G.4
Kok, J.5
-
19
-
-
33646062279
-
Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009
-
Kenny J.G., Leach S., de la Hoz A.B., Venema G., Kok J., Fitzgerald G.F., et al. Characterization of the lytic-lysogenic switch of the lactococcal bacteriophage Tuc2009. Virology 347 (2006) 434-446
-
(2006)
Virology
, vol.347
, pp. 434-446
-
-
Kenny, J.G.1
Leach, S.2
de la Hoz, A.B.3
Venema, G.4
Kok, J.5
Fitzgerald, G.F.6
-
20
-
-
0032763651
-
The genetic switch regulating activity of early promoters of the temperate lactococcal bacteriophage TP901-1
-
Madsen P.L., Johansen A.H., Hammer K., and Brøndsted L. The genetic switch regulating activity of early promoters of the temperate lactococcal bacteriophage TP901-1. J. Bacteriol. 181 (1999) 7430-7438
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7430-7438
-
-
Madsen, P.L.1
Johansen, A.H.2
Hammer, K.3
Brøndsted, L.4
-
21
-
-
0029039260
-
Cloning and partial characterization of regulated promoters from Lactococcus lactis Tn917-lacZ integrants with the new promoter probe vector, pAK80
-
Israelsen H., Madsen S.M., Vrang A., Hansen E.B., and Johansen E. Cloning and partial characterization of regulated promoters from Lactococcus lactis Tn917-lacZ integrants with the new promoter probe vector, pAK80. Appl. Environ. Microbiol. 61 (1995) 2540-2547
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2540-2547
-
-
Israelsen, H.1
Madsen, S.M.2
Vrang, A.3
Hansen, E.B.4
Johansen, E.5
-
22
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley L.A., MacCallum R.M., and Sternberg M.J. Enhanced genome annotation using structural profiles in the program 3D-PSSM. J. Mol. Biol. 299 (2000) 499-520
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
23
-
-
0026682657
-
Transcription factors: structural families and principles of DNA recognition
-
Pabo C.O., and Sauer R.T. Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem. 61 (1992) 1053-1095
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 1053-1095
-
-
Pabo, C.O.1
Sauer, R.T.2
-
24
-
-
33745048293
-
Structure of the Sulfolobus solfataricus alpha-glucosidase: implications for domain conservation and substrate recognition in GH31
-
Ernst H.A., Lo Leggio L., Willemoes M., Leonard G., Blum P., and Larsen S. Structure of the Sulfolobus solfataricus alpha-glucosidase: implications for domain conservation and substrate recognition in GH31. J. Mol. Biol. 358 (2006) 1106-1124
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1106-1124
-
-
Ernst, H.A.1
Lo Leggio, L.2
Willemoes, M.3
Leonard, G.4
Blum, P.5
Larsen, S.6
-
25
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
Volkov V.V., and Svergun D.I. Uniqueness of ab initio shape determination in small-angle scattering. J. Appl. Crystallogr. 36 (2003) 860-864
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
26
-
-
39049107930
-
-
DeLano, W. L. (2002). The PyMOL Molecular Graphics System on World Wide Web http://www.pymol.org.
-
DeLano, W. L. (2002). The PyMOL Molecular Graphics System on World Wide Web http://www.pymol.org.
-
-
-
-
27
-
-
0035124442
-
Automated matching of high- and low-resolution structural models
-
Kozin M.B., and Sergun D.I. Automated matching of high- and low-resolution structural models. J. Appl. Crystallogr. 34 (2001) 33-41
-
(2001)
J. Appl. Crystallogr.
, vol.34
, pp. 33-41
-
-
Kozin, M.B.1
Sergun, D.I.2
-
28
-
-
0032514949
-
An evolutionary link between sporulation and prophage induction in the structure of a repressor:anti-repressor complex
-
Lewis R.J., Brannigan J.A., Offen W.A., Smith I., and Wilkinson A.J. An evolutionary link between sporulation and prophage induction in the structure of a repressor:anti-repressor complex. J. Mol. Biol. 283 (1998) 907-912
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 907-912
-
-
Lewis, R.J.1
Brannigan, J.A.2
Offen, W.A.3
Smith, I.4
Wilkinson, A.J.5
-
29
-
-
33644764840
-
The molecular architecture of the metalloprotease FtsH
-
Bieniossek C., Schalch T., Bumann M., Meister M., Meier R., and Baumann U. The molecular architecture of the metalloprotease FtsH. Proc. Natl Acad. Sci. USA 103 (2006) 3066-3071
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 3066-3071
-
-
Bieniossek, C.1
Schalch, T.2
Bumann, M.3
Meister, M.4
Meier, R.5
Baumann, U.6
-
30
-
-
33644767163
-
Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus
-
Lehtio L., Grossmann J.G., Kokona B., Fairman R., and Goldman A. Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus. J. Mol. Biol. 357 (2006) 221-235
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 221-235
-
-
Lehtio, L.1
Grossmann, J.G.2
Kokona, B.3
Fairman, R.4
Goldman, A.5
-
31
-
-
39049128523
-
-
Johansen, A. H. (2000). The Genetic Switch of the Temperate Lactococcal Bacteriophage TP901-1. Ph.D. thesis, Technical University of Denmark, Lyngby, Denmark.
-
Johansen, A. H. (2000). The Genetic Switch of the Temperate Lactococcal Bacteriophage TP901-1. Ph.D. thesis, Technical University of Denmark, Lyngby, Denmark.
-
-
-
-
32
-
-
0030925920
-
Pfam: a comprehensive database of protein domain families based on seed alignments
-
Sonnhammer E.L., Eddy S.R., and Durbin R. Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins: Struct. Funct. Genet. 28 (1997) 405-420
-
(1997)
Proteins: Struct. Funct. Genet.
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
34
-
-
0036479225
-
The helix-turn-helix motif of the coliphage 186 immunity repressor binds to two distinct recognition sequences
-
Shearwin K.E., Dodd I.B., and Egan J.B. The helix-turn-helix motif of the coliphage 186 immunity repressor binds to two distinct recognition sequences. J. Biol. Chem. 277 (2002) 3186-3194
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 3186-3194
-
-
Shearwin, K.E.1
Dodd, I.B.2
Egan, J.B.3
-
35
-
-
1042278041
-
Cooperativity in long-range gene regulation by the lambda CI repressor
-
Dodd I.B., Shearwin K.E., Perkins A.J., Burr T., Hochschild A., and Egan J.B. Cooperativity in long-range gene regulation by the lambda CI repressor. Genes Dev. 18 (2004) 344-354
-
(2004)
Genes Dev.
, vol.18
, pp. 344-354
-
-
Dodd, I.B.1
Shearwin, K.E.2
Perkins, A.J.3
Burr, T.4
Hochschild, A.5
Egan, J.B.6
-
36
-
-
0020600404
-
Plasmid complements of Streptococcus lactis NCDO 712 and other lactic streptococci after protoplast-induced curing
-
Gasson M.J. Plasmid complements of Streptococcus lactis NCDO 712 and other lactic streptococci after protoplast-induced curing. J. Bacteriol. 154 (1983) 1-9
-
(1983)
J. Bacteriol.
, vol.154
, pp. 1-9
-
-
Gasson, M.J.1
-
37
-
-
0016686551
-
Improved medium for lactic streptococci and their bacteriophages
-
Terzaghi B.E., and Sandine W.E. Improved medium for lactic streptococci and their bacteriophages. Appl. Microbiol. 29 (1975) 807-813
-
(1975)
Appl. Microbiol.
, vol.29
, pp. 807-813
-
-
Terzaghi, B.E.1
Sandine, W.E.2
-
38
-
-
0024345189
-
High-frequency transformation, by electroporation, of Lactococcus lactis subsp. cremoris grown with glycine in osmotically stabilized media
-
Holo H., and Nes I.F. High-frequency transformation, by electroporation, of Lactococcus lactis subsp. cremoris grown with glycine in osmotically stabilized media. Appl. Environ. Microbiol. 55 (1989) 3119-3123
-
(1989)
Appl. Environ. Microbiol.
, vol.55
, pp. 3119-3123
-
-
Holo, H.1
Nes, I.F.2
-
39
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
40
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller J.H. Experiments in Molecular Genetics (1972), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
41
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., and Bairoch A. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31 (2003) 3784-3788
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
42
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
43
-
-
0022787110
-
Data appraisal, evaluation and display for synchrotron radiation experiments: hardware and software
-
Boulin C., Kempf R., Koch M.H.J., and McLaughlin S.M. Data appraisal, evaluation and display for synchrotron radiation experiments: hardware and software. Nucl. Instrum. Methods Phys. Res. A249 (1986) 399-407
-
(1986)
Nucl. Instrum. Methods Phys. Res.
, vol.A249
, pp. 399-407
-
-
Boulin, C.1
Kempf, R.2
Koch, M.H.J.3
McLaughlin, S.M.4
-
44
-
-
0029185933
-
CRYSOL-a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
Svergun D., Barberato C., and Koch M.H.J. CRYSOL-a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J. Appl. Crystallogr. 28 (1995) 768-773
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
45
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
Svergun D.I., Petoukhov M.V., and Koch M.H. Determination of domain structure of proteins from X-ray solution scattering. Biophys. J. 80 (2001) 2946-2953
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
46
-
-
36749061828
-
Template-based modeling and free modeling by I-TASSER in CAPS7
-
Zhang Y. Template-based modeling and free modeling by I-TASSER in CAPS7. Proteins 69 (2007) 108-117
-
(2007)
Proteins
, vol.69
, pp. 108-117
-
-
Zhang, Y.1
-
47
-
-
10344232638
-
Scoring function for automated assessment of protein structure template quality
-
Zhang Y., and Skolnick J. Scoring function for automated assessment of protein structure template quality. Proteins 57 (2004) 702-710
-
(2004)
Proteins
, vol.57
, pp. 702-710
-
-
Zhang, Y.1
Skolnick, J.2
-
48
-
-
23244455562
-
Global rigid body modeling of macromolecular complexes against small-angle scattering data
-
Petoukhov M.V., and Svergun D.I. Global rigid body modeling of macromolecular complexes against small-angle scattering data. Biophys. J. 89 (2005) 1237-1250
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
|