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Volumn 91, Issue 3, 2008, Pages 531-544

Dynamics of HIV infection studied with cellular automata and conformon-P systems

Author keywords

Cellular automata; Conformon P systems; HIV infection; P systems; Virus host interaction

Indexed keywords

CELLULAR AUTOMATON; HOST-PATHOGEN INTERACTION; HUMAN IMMUNODEFICIENCY VIRUS; VIRUS;

EID: 38949165633     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2007.01.007     Document Type: Article
Times cited : (23)

References (45)
  • 1
    • 0032136247 scopus 로고    scopus 로고
    • On modelling hepatitis B transmission using cellular automata
    • Ahmed E., Agiza H.N., and Hassan S.Z. On modelling hepatitis B transmission using cellular automata. J. Stat. Phys. 92 3/4 (1998) 707-712
    • (1998) J. Stat. Phys. , vol.92 , Issue.3-4 , pp. 707-712
    • Ahmed, E.1    Agiza, H.N.2    Hassan, S.Z.3
  • 2
    • 85194566026 scopus 로고    scopus 로고
    • Bernardini, F., Gheorghe, M., Krasnogor, N., Muniyandi, R.C., Pérez-Jiménez, M.J., Romero-Campero, F.J., 2006. On P systems as a modeling tool for biochemical systems. In: Freund et al. (2006). pp. 114-133.
    • Bernardini, F., Gheorghe, M., Krasnogor, N., Muniyandi, R.C., Pérez-Jiménez, M.J., Romero-Campero, F.J., 2006. On P systems as a modeling tool for biochemical systems. In: Freund et al. (2006). pp. 114-133.
  • 3
    • 85194577362 scopus 로고    scopus 로고
    • Besozzi, D., 2004. Computational and modelling power of P systems. Ph.D. Thesis. Universitá degli Studi di Milano, Italy.
    • Besozzi, D., 2004. Computational and modelling power of P systems. Ph.D. Thesis. Universitá degli Studi di Milano, Italy.
  • 4
    • 85194565540 scopus 로고    scopus 로고
    • Dal Zilio, S., Formenti, E., 2003. On the dynamics of PB systems. In: Martín-Vide et al. (2003). pp. 197-208.
    • Dal Zilio, S., Formenti, E., 2003. On the dynamics of PB systems. In: Martín-Vide et al. (2003). pp. 197-208.
  • 6
    • 42749102416 scopus 로고    scopus 로고
    • Dynamics of HIV infection: a cellular automata approach
    • Dos Santos R.M., and Coutinho S. Dynamics of HIV infection: a cellular automata approach. Phys. Rev. Lett. 87 16 (2001) 168102
    • (2001) Phys. Rev. Lett. , vol.87 , Issue.16 , pp. 168102
    • Dos Santos, R.M.1    Coutinho, S.2
  • 8
    • 85194537181 scopus 로고    scopus 로고
    • Freund, F., Lojka, G., Oswald, M., Pǎun, Gh. (Eds.), 2006. Membrane Computing, International Workshop, Vienna, Austria, vol. 3850 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
    • Freund, F., Lojka, G., Oswald, M., Pǎun, Gh. (Eds.), 2006. Membrane Computing, International Workshop, Vienna, Austria, vol. 3850 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
  • 9
    • 0347600627 scopus 로고    scopus 로고
    • The conformon-P system: A molecular and cell biology-inspired computability model
    • Frisco P. The conformon-P system: A molecular and cell biology-inspired computability model. Theor. Comput. Sci. 312 2-3 (2004) 295-319
    • (2004) Theor. Comput. Sci. , vol.312 , Issue.2-3 , pp. 295-319
    • Frisco, P.1
  • 10
    • 85194566711 scopus 로고    scopus 로고
    • Frisco, P., 2006a. P systems, Petri nets, and Program machines. In: Freund et al. (2006). pp. 209-223.
    • Frisco, P., 2006a. P systems, Petri nets, and Program machines. In: Freund et al. (2006). pp. 209-223.
  • 11
    • 85194550352 scopus 로고    scopus 로고
    • Frisco, P., 2006b. Infinite hierarchies of conformon-P systems. In: Hoogeboom, H.J., Pǎun, Gh., Rozenberg, G., Salomaa, A., (Eds.), Membrane Computing, International Workshop, Leiden, The Netherlands, vol. 4361 of Lecture Notes in Computer Science. Springer, pp. 395-408.
    • Frisco, P., 2006b. Infinite hierarchies of conformon-P systems. In: Hoogeboom, H.J., Pǎun, Gh., Rozenberg, G., Salomaa, A., (Eds.), Membrane Computing, International Workshop, Leiden, The Netherlands, vol. 4361 of Lecture Notes in Computer Science. Springer, pp. 395-408.
  • 13
    • 85194534393 scopus 로고    scopus 로고
    • Frisco, P., Ji, S., 2002a. Conformons-P systems. In: Hagiya, M., Ohuchi, A., (Eds.), Eighth International Meeting on DNA Based Computers, Hokkaido University, Sapporo, Japan, vol. 2568 of Lecture Notes in Computer Science. Springer, pp. 291-301.
    • Frisco, P., Ji, S., 2002a. Conformons-P systems. In: Hagiya, M., Ohuchi, A., (Eds.), Eighth International Meeting on DNA Based Computers, Hokkaido University, Sapporo, Japan, vol. 2568 of Lecture Notes in Computer Science. Springer, pp. 291-301.
  • 14
    • 85194558802 scopus 로고    scopus 로고
    • Frisco, P., Ji, S., 2002b. Towards a hierarchy of info-energy P systems. In: Pǎun, Gh., Rozenberg, G., Salomaa, A., Zandron, C., (Eds.), Membrane Computing, International Workshop, Curtea de Arges, Romania, vol. 2597 of Lecture Notes in Computer Science. Springer, pp. 302-319.
    • Frisco, P., Ji, S., 2002b. Towards a hierarchy of info-energy P systems. In: Pǎun, Gh., Rozenberg, G., Salomaa, A., Zandron, C., (Eds.), Membrane Computing, International Workshop, Curtea de Arges, Romania, vol. 2597 of Lecture Notes in Computer Science. Springer, pp. 302-319.
  • 15
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie D.T. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Phys. 80 22 (1976) 403-434
    • (1976) J. Comp. Phys. , vol.80 , Issue.22 , pp. 403-434
    • Gillespie, D.T.1
  • 16
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem 81 25 (1977) 2340-2361
    • (1977) J. Phys. Chem , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 17
    • 21344434451 scopus 로고
    • The electromechanical model of mitochondrial structure and function
    • Schultz J., and Cameron B.F. (Eds), Academic Press, New York
    • Green D.E., and Ji S. The electromechanical model of mitochondrial structure and function. In: Schultz J., and Cameron B.F. (Eds). Molecular Basis of Electron Transport (1972), Academic Press, New York 1-44
    • (1972) Molecular Basis of Electron Transport , pp. 1-44
    • Green, D.E.1    Ji, S.2
  • 18
    • 0000642507 scopus 로고
    • Time evolution of a two-dimensional model system. I. Invariant states and time correlation functions
    • Hardy J., Pomeau Y., and de Pazzis O. Time evolution of a two-dimensional model system. I. Invariant states and time correlation functions. J. Math Phys. 14 12 (1973) 1746-1759
    • (1973) J. Math Phys. , vol.14 , Issue.12 , pp. 1746-1759
    • Hardy, J.1    Pomeau, Y.2    de Pazzis, O.3
  • 19
    • 0347600614 scopus 로고    scopus 로고
    • Catalytic P systems, semilinear sets, and vector addition systems
    • Ibarra O.H., Dang Z., and Egecioglu O. Catalytic P systems, semilinear sets, and vector addition systems. Theor. Comput. Sci. 312 1-2 (2004) 379-399
    • (2004) Theor. Comput. Sci. , vol.312 , Issue.1-2 , pp. 379-399
    • Ibarra, O.H.1    Dang, Z.2    Egecioglu, O.3
  • 20
    • 0022412104 scopus 로고
    • The Bhopalator: a molecular model of the living cell based on the concepts of conformons and dissipative structures
    • Ji S. The Bhopalator: a molecular model of the living cell based on the concepts of conformons and dissipative structures. J. Theor. Biol. 116 (1985) 395-426
    • (1985) J. Theor. Biol. , vol.116 , pp. 395-426
    • Ji, S.1
  • 21
    • 0036190821 scopus 로고    scopus 로고
    • The Bhopalator: an information/energy dual model of the living cell (II)
    • Ji S. The Bhopalator: an information/energy dual model of the living cell (II). Fundament. Informat. 49 1-3 (2002) 147-165
    • (2002) Fundament. Informat. , vol.49 , Issue.1-3 , pp. 147-165
    • Ji, S.1
  • 22
    • 41049083274 scopus 로고    scopus 로고
    • From HIV infection to AIDS: a dynamically induced percolation transition?
    • Kamp C., and Bornholdt S. From HIV infection to AIDS: a dynamically induced percolation transition?. Proc. R. Soc. B: Biol. Sci. 269 1504 (2002) 2035-2040
    • (2002) Proc. R. Soc. B: Biol. Sci. , vol.269 , Issue.1504 , pp. 2035-2040
    • Kamp, C.1    Bornholdt, S.2
  • 24
    • 85194585390 scopus 로고    scopus 로고
    • Kleijn, J., Koutny, M., Rozenberg, G., 2006. Towards a Petri net semantics for membrane systems. In: Freund et al. (2006). pp. 292-309.
    • Kleijn, J., Koutny, M., Rozenberg, G., 2006. Towards a Petri net semantics for membrane systems. In: Freund et al. (2006). pp. 292-309.
  • 25
    • 85194556665 scopus 로고    scopus 로고
    • Landweber L.F., and Winfree E. (Eds), Berlin, Heidelberg, New York
    • In: Landweber L.F., and Winfree E. (Eds). Evolution as Computation. Natural Computing Series (1999), Berlin, Heidelberg, New York
    • (1999) Evolution as Computation. Natural Computing Series
  • 26
    • 0001631287 scopus 로고
    • Studying artificial life with cellular automata
    • Langton C.G. Studying artificial life with cellular automata. Physica D 2 1-3 (1986) 120-149
    • (1986) Physica D , vol.2 , Issue.1-3 , pp. 120-149
    • Langton, C.G.1
  • 27
    • 33745752640 scopus 로고    scopus 로고
    • Cellular growth and division in the Gillespie algorithm
    • Lu T., Volfson D., Tsimring L., and Hasty J. Cellular growth and division in the Gillespie algorithm. IEE Syst. Biol. 1 1 (2004) 121-127
    • (2004) IEE Syst. Biol. , vol.1 , Issue.1 , pp. 121-127
    • Lu, T.1    Volfson, D.2    Tsimring, L.3    Hasty, J.4
  • 28
    • 85194541385 scopus 로고    scopus 로고
    • Martín-Vide, C., Mauri, G., Pǎun, Gh., Rozenberg, G., Salomaa, A. (Eds.), 2003. Membrane Computing, International Workshop, Tarragona, Spain, vol. 2933 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
    • Martín-Vide, C., Mauri, G., Pǎun, Gh., Rozenberg, G., Salomaa, A. (Eds.), 2003. Membrane Computing, International Workshop, Tarragona, Spain, vol. 2933 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
  • 32
    • 0001918317 scopus 로고    scopus 로고
    • Mathematical analysis of HIV-1 dynamics in vivo
    • Perelson A.S., and Nelson P.W. Mathematical analysis of HIV-1 dynamics in vivo. SIAM Rev. 41 1 (1999) 3-44
    • (1999) SIAM Rev. , vol.41 , Issue.1 , pp. 3-44
    • Perelson, A.S.1    Nelson, P.W.2
  • 36
    • 85194571843 scopus 로고    scopus 로고
    • Qi, Z., You, J., 2003. P systems and Petri nets. In: Martín-Vide et al. (2003). pp. 387-403.
    • Qi, Z., You, J., 2003. P systems and Petri nets. In: Martín-Vide et al. (2003). pp. 387-403.
  • 37
    • 0037179670 scopus 로고    scopus 로고
    • Cells as computation
    • Regev A., and Shapiro E. Cells as computation. Nature 419 (2002) 343
    • (2002) Nature , vol.419 , pp. 343
    • Regev, A.1    Shapiro, E.2
  • 38
    • 85194536801 scopus 로고    scopus 로고
    • Reisig, W., Rozenberg, G. (Eds.), 1998. Lectures on Petri Nets I: Basic Models, vol. 1491 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
    • Reisig, W., Rozenberg, G. (Eds.), 1998. Lectures on Petri Nets I: Basic Models, vol. 1491 of Lecture Notes in Computer Science. Springer-Verlag, Berlin, Heidelberg, New York.
  • 40
    • 18744377528 scopus 로고    scopus 로고
    • Comment on "Dynamics of HIV infection: a cellular automata approach"
    • Strain M.C., and Levine H. Comment on "Dynamics of HIV infection: a cellular automata approach". Phys. Rev. Lett. 89 21 (2002) 219805
    • (2002) Phys. Rev. Lett. , vol.89 , Issue.21 , pp. 219805
    • Strain, M.C.1    Levine, H.2
  • 44
    • 0036901603 scopus 로고    scopus 로고
    • Mathematical models of HIV pathogenesis and treatment
    • Wodarz D., and Nowak M.A. Mathematical models of HIV pathogenesis and treatment. Bioessays 24 12 (2002) 1178-1187
    • (2002) Bioessays , vol.24 , Issue.12 , pp. 1178-1187
    • Wodarz, D.1    Nowak, M.A.2
  • 45
    • 35949018560 scopus 로고
    • Statistical mechanics of cellular automata
    • Wolfram S. Statistical mechanics of cellular automata. Rev. Mod. Phys. 55 (1983) 601-644
    • (1983) Rev. Mod. Phys. , vol.55 , pp. 601-644
    • Wolfram, S.1


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