The Bhopalator: An information/energy dual model of the living cell (II)

Fundamenta Informaticae

Volumn 49, Issue 1-3, 2002, Pages 147-165

  Ji, Sungchul ^a  

^a RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGEBRA; COMPUTATIONAL LINGUISTICS; COMPUTER SCIENCE; ENCODING (SYMBOLS); MATHEMATICAL MODELS; MOLECULAR BIOLOGY;

MOLECULAR MODELS;

CELLS;

EID: 0036190821     PISSN: 01692968     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (61)

1. Making molecules into motors
2. The Bhopalator - A molecular model of the living cell based on the concepts of conformons and dissipative structures
3. Biocybernetics: A machine theory of biology
4. Intracellular free calcium localization in Neutrophils during phagocytosis
5. Isomorphism between cell and human languages
6. A cell linguistic analysis of apoptosis
7. Cell language (Cellese): Implications for biology, linguistics, and philosophy
8. A general theory of ATP synthesis and utilization
9. The principles of ligand-protein interactions and their application to the mechanism of oxidative phosphorylation
10. Free energy and information contents of conformons in proteins and DNA
11. The Bhopalator - A molecular model of the living cell; New developments
12. The cell as the smallest DNA-based molecular computer
13. Linguistics of DNA: Words, sentences, grammar, phonetics and semantics
14. Microsemiotics of DNA
15. The conformon
16. The electromechanochemical model of mitochondrial structure and function
17. Polarons and conformons
18. Quantum mechanical model for conformons
19. Mechanisms of conformon creation in α-helical structures
20. Equation of motion of conformon and primitive molecular machines for electron (ion) transport in biological systems
21. Interaction of closed circular DNA with intercalative dyes II. The free energy of superhelix formation in SV40 DNA
22. Thermodynamic properties of superhelical DNAs
23. Mechanistic aspects of DNA topoisomerases
24. Interaction between DNA and an Escherichia coli protein
25. DNA gyrase: An enzyme that introduces superhelical turns into DNA
26. Supercoiling of the DNA template during transcription
27. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome
28. Multiple DNA elements in ARS305 determine replication origin activity in a yeast chromosome
29. Presence of nonlinear excitations in DNA structure and their relationship to DNA premelting and drug intercalation
30. Energetics of the strand separation transition in superhelical DNA
31. Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory sites
32. Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions
33. Computation of DNA structural variability-a new predictor of DNA regulatory regions
34. Suggested model for prebiotie evolution: The use of chaos
35. Computer modeling of prebiotie evolution: General theoretical ideas on the origin of biological information
36. Free-energy management in protein reactions: Concepts, complications, and compensation
37. Function and dynamics of myoglobin
38. Reaction mechanisms, catalysis, and movement
39. The theory of contraction of proteins under their excitation
40. Nature of the open state in long polynucleotide double helices: Possibility of soliton excitation
41. Actinomycin and DNA transcription
42. The DNA unwinding element: A novel, cis-acting component that facilitates opening of the Escherichia coli replication origin
43. Biophysical time on macromolecular level
44. Linguistic structures and generative devices in molecular genetics
45. Watson-Crick finite automata
46. State and transition complexity of Watson-Crick finite automata
47. MAP kinase pathways
48. Spatial compartmentalization of signal transduction in insulin action
49. Computing with membranes
50. Complexes of sequential metabolic enzymes
51. Hypothesis: Hyperstructures regulate bacterial structure and the cell cycle
52. From molecular to modular cell biology
53. Complementarism: A biology-based philosophical framework to integrate Western science and Eastern Tao