Characterization of the Yarrowia lipolytica YlSRP72 gene, a component of the yeast signal recognition particle

International Microbiology

Volumn 10, Issue 4, 2007, Pages 283-289

  Ruiz Pavón, Lorena ^a,b   Domínguez, Ángel ^a  

^a UNIVERSITY OF SALAMANCA   (Spain)

^b DEPARTAMENTO DE QUÍMICA   (Mexico)

Author keywords

Gene SRP72; Protein secretion; Signal recognition particle; Yarrowia lipolytica

Indexed keywords

EUKARYOTA; MAMMALIA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETES; YARROWIA LIPOLYTICA;

EID: 38949138436     PISSN: 11396709     EISSN: 16181905     Source Type: Journal    
DOI: 10.2436/20.1501.01.37     Document Type: Article

References (42)

1. Barth G, Bechkerich JM, Dominguez A, Kerscher S, Ogrydziak D, Titorenko V, Gaillardin C (2003) Functional genetics of Yarrowia lipolytica. Topics Curr Genet 2:227-272
2. Barth G, Gaillardin C (1996) Yarrowia lipolytica. In: Wolf WK (ed) Genetics, biochemistry and molecular biology of non conventional yeasts in biotechnology. Springer-Verlag, Berlin, Germany, , vol 1, p 313-388.
3. Ben-Mamoun C, Beckerich JM, Gaillardin C (1996) The TSR1 gene of Yarrowia lipolytica is involved in the signal recognition particledependent translocation pathway of secretory proteins. J Biol Chem 271:23895-23901
4. Boeke JD, Trueheart J, Natsoulis G, Fink GR (1987) 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol 154:164-175
5. Boisramé A, Beckerich JM, Gaillardin C (1996) Sls1p, an endoplasmic reticulum component, is involved in the protein translocation process in the yeast Yarrowia lipolytica. J Biol Chem 271:11668-11675
6. Brown JD, Hann BC, Medzihradsky KF, Niwa M, Burlingame AL, Walter P (1994) Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression. EMBO J 13:4390-4400
7. Casarégola S, Feynerol C, Diez M, Fournier P, Gaillardin C (1997) Genomic organization of the yeast Yarrowia lipolytica. Chromosoma 106:380-390
8. Cigan AM, Donahue TF (1987) Sequence and structural features associated with translational initiator regions in yeast-a review. Gene 59:1-18
9. Dobson MJ, Tuite MF, Roberts NA, et al. (1982) Conservation of high efficiency promotor sequences in Saccharomyces cerevisiae. Nucleic Acids Res 10:2625-2637
10. Dujon B, Sherman D, Fischer G, et al. (2004) Genome evolution in yeasts. Nature 430:35-44
11. Felici F, Cesareni G, Hughes JM (1989) The most abundant small cytoplasmic RNA of Saccharomyces cerevisiae has an important function required for normal cell growth. Mol Cell Biol 9:3260-3268
12. Grosshans H, Deinert K, Hurt E, Simos G (2001) Biogenesis of the signal recognition particle (SRP) involves import of SRP proteins into the nucleolus, assembly with the SRP-RNA, and Xpo1p-mediated export. J Cell Biol 153:745-762
13. Guarente L (1984) Yeast promoters: positive and negative elements. Cell 36:799-800
14. Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166:557-580
15. Hann BC, Poritz MA, Walter P (1989) Saccharomyces cerevisiae and Schizosaccharomyces pombe contain a homologue to the 54-kD subunit of the signal recognition particle that in S. cerevisiae is essential for growth. J Cell Biol 109:3223-3230
16. Hann BC, Walter P (1991) The signal recognition particle in S. cerevisiae. Cell 67:131-144
17. He D, Beckerich JM, Ribes V, Tollervey D, Gaillardin CM (1989) Two genes encode 7SL RNAs in the yeast Yarrowia lipolytica. Curr Genet 16:347-350
18. He D, Yaver D, Beckerich JM, Ogrydziak D, Gaillardin C (1999) The yeast Yarrowia lipolytica has two, functional, signal recognition particle 7S RNA genes. Curr Genet 17:289-292
19. Hoffman CS, Winston F (1987) A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267-272
20. Jiménez J, Castelao BA, González-Novo A, Sánchez-Pérez M (2005) The role of MEN (mitosis exit network) proteins in the cytokinesis of Saccharomyces cerevisiae. Int Microbiol 8:33-42
21. Lee IH, Ogrydziak D (1997) Yarrowia lipolytica SRP54 homolog and translocation of Kar2p. Yeast 13:499-513
22. Lütcke H (1995) Signal recognition particle (SRP), a ubiquitous initiator of protein translocation. Eur J Biochem 228:531-550
23. Nagai K, Oubridge C, Kuglstatter A, Menichelli E, Isel C, Jovine L (2003) Structure, function and evolution of the signal recognition particle. EMBO J 22:3479-3485
24. Naumova E, Naumov G, Fournier P, Nguyen HV, Gaillardin C (1993) Chromosomal polymorphism of the yeast Yarrowia lipolytica and related species: electrophoretic karyotyping and hybridization with cloned genes. Curr Genet 23:450-454
25. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448
26. Piskur J, Langkjaer RB (2004) Yeast genome sequencing: the power of comparative genomics. Mol Microbiol 53:381-389
27. Politz JC, Yarovoi S, Kilroy SM, Gowda K, Zwieb C, Pederson T (2000) Signal recognition particle components in the nucleolus. Proc Natl Acad Sci USA 97:55-60
28. Poritz MA, Siegel V, Hansen W, Walter P (1988) Small ribonucleoproteins in Schizosaccharomyces pombe and Yarrowia lipolytica homologous to signal recognition particle. Proc Natl Acad Sci USA 85:4315-4319
29. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York
30. Sánchez M, Prado M, Iglesias FJ, Domínguez A (1995) Cloning and sequencing of the URA5 gene from the yeast Yarrowia lipolytica. Yeast 11:425-433
31. Sánchez M, Beckerich JM, Gaillardin C, Domínguez A (1997) Isolation and cloning of the Yarrowia lipolytica SEC65 gene, a component of the yeast signal recognition particle displaying homology with the human SRP19 gene. Gene 203: 75-84
32. Siegel V, Walter P (1988) Each of the activities of signal recognition particle (SRP) is contained with a distinct domain: analysis of biochemical mutant of SRP. Cell 52:39-49
33. Stirling CJ, Hewitt EW (1992) The S. cerevisiae SEC65 gene encodes a component of yeast signal recognition particle with homology to human SRP19. Nature 356:534-537
34. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
35. Torres-Guzman JC, Domínguez A(1997) HOY1, a homeo gene required for hyphal formation in Yarrowia lipolytica. Mol Cell Biol 17: 6283-6293
36. Walter P, Ibrahimi I, Blobel G (1981) Translocation of proteins across the endoplasmic reticulum. I. Signal recognition protein (SRP) binds to in-vitro-assembled polysomes synthesizing secretory protein. J Cell Biol 91:545-550
37. Walter P, Johnson AE (1994) Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane. Annu Rev Cell Biol 10:87-119
38. Wild K, Rosendal KR, Sinning I (2004) A structural step into the SRP cycle. Mol Microbiol 53:357-363
39. Xuan JW, Fournier P, Gaillardin C (1988) Cloning of the LYS5 gene encoding saccharopine dehydrogenase from the yeast Yarrowia lipolytica by target integration. Curr Genetic 14:15-21
40. Xuan JW, Fournier P, Declerck N, Chasles M, Gaillardin C (1990) Overlapping reading frames at the LYS5 locus in the yeast Yarrowia lipolytica. Mol Cell Biol 10:4795-4806
41. Yaver DS, Matoba S, Ogrydziak DM (1992) A mutation in the signal recognition particle 7S RNA of the yeast Yarrowia lipolytica preferentially affects synthesis of the alkaline extracellular protease: in vivo evidence for translational arrest. J Cell Biol 116:605-616
42. Zaret KS, Sherman F (1982) DNA sequence required for efficient transcription termination in yeast. Cell 28:563-573