Reconstruction of Pathways Associated with Amino Acid Metabolism in Human Mitochondria

Genomics, Proteomics and Bioinformatics

Volumn 5, Issue 3-4, 2007, Pages 166-176

  Guda, Purnima ^a   Guda, Chittibabu ^a   Subramaniam, Shankar ^b,c  

^a STATE UNIVERSITY OF NEW YORK   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

amino acid metabolism; human; metabolic pathways; mitochondria

Indexed keywords

AMINO ACID;

AMINO ACID METABOLISM; ARTICLE; DATA BASE; MITOCHONDRIAL RESPIRATION; MITOCHONDRION; PROTEIN ANALYSIS; PROTEIN LOCALIZATION;

AMINO ACID METABOLISM, INBORN ERRORS; AMINO ACIDS; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; HUMANS; MITOCHONDRIA; MITOCHONDRIAL PROTEINS; MODELS, BIOLOGICAL; PROTEOMICS;

EID: 38949119434     PISSN: 16720229     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-0229(08)60004-2     Document Type: Article

References (23)

1. Feist A.M., et al. 2006. Modeling methanogene sis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Mol. Syst. Biol. 2 (2006) 0004
2. F̈orster J., et al. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13 (2003) 244-253
3. Boyer F., and Viari A. Ab initio reconstruction of metabolic pathway. Bioinformatics 19 (2003) ii26-ii34
4. Herrgård M.J., et al. Identification of genomescale metabolic network models using experimentally measured flux profiles. PLoS. Comput. Biol. 2 (2006) e72
5. Vo T.D., et al. Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. J. Biol. Chem. 279 (2004) 39532-39540
6. Fabio P., et al. Lysine degradation through the saccharopine pathway in mammals: involvement of both bifunctional and monofunctional lysinedegrading enzymes in mouse. Biochem. J. 344 (1999) 555-563
7. Praphanphoj V., et al. Identification of the alpha-aminoadipic semialdehyde dehydrogenasephosphopantetheinyl transferase gene, the human ortholog of the yeast LYS5 gene. Mol. Genet. Metab. 72 (2001) 336-342
8. Salway J.G. Metabolism at a Glance. third edition (2003), Blackwell Publishing Inc., Malden, USA
9. Malherbe P., et al. Identification of a mitochondrial form of kynurenine aminotransferase/ glutamine transaminase K form rat brain. FEBS Lett. 367 (1995) 141-144
10. Kwok S.C., et al. Nucleotide sequence of a full-length complementary DNA clone and amino acid sequence of human phenylalanine hydroxylase. Biochemistry 24 (1985) 556-561
11. Vashkevich I.I., et al. Autoantibodies to human thyroid peroxidase in immunoassay and immunoaffinity chromatography. Prikl. Biokhim. Mikrobiol. 38 (2002) 96-102
12. Kitagawa Y., and Sugimoto E. Possibility of mitochondrial-cytosolic cooperation in gluconeogenesis from serine via hydroxypyruvate. Biochim. Biophys. Acta 582 (1979) 276-282
13. Kitagawa Y., et al. Identity of mitochondrial and cytosolic glycerate kinases in rat liver and regulation of their intracellular localization by dietary protein. Biochim. Biophys. Acta 582 (1979) 260-275
14. Takada Y., et al. Human peroxisomal Lalanine: glyoxylate aminotransferase. Evolutionary Amino Acid Pathways in Human Mitochondria loss of a mitochondrial targeting signal by point mutation of the initiation codon. Biochem. J. 268 (1990) 517-520
15. Edgar A.J. Molecular cloning and tissue distribution of mammalian L-threonine 3-dehydrogenases. BMC Biochem. 3 (2002) 19
16. Binda C., et al. Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures. Proc. Natl. Acad. Sci. USA 100 (2003) 9750-9755
17. Dariush N., et al. Structure of the gene encoding the entire mature E1 alpha subunit of human branched-chain alpha-keto acid dehydrogenase complex. FEBS Lett. 284 (1991) 34-38
18. Jeremiah S., and Povey S. The biochemical genetics of human gamma-aminobutyric acid transaminase. Ann. Hum. Genet. 45 (1981) 231-236
19. Wilkin G.P., et al. Subcellular fractionation of rat cerebellum: separation of synaptosomal populations and heterogeneity of mitochondria. Brain Res. 164 (1979) 153-163
20. Palmieri F. The mitochondrial transporter family (SLC25): physiological and pathological implications. Pflugers Arch. 447 (2004) 689-709
21. Taylor S.W., et al. Characterization of the human heart mitochondrial proteome. Nat. Biotechnol. 21 (2003) 281-286
22. Cotter D., et al. MitoProteome: mitochondrial protein sequence database and annotation system. Nucleic Acids Res. 32 (2004) D463-D467
23. Guda C., et al. MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20 (2004) 1785-1794