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Volumn 8, Issue , 2007, Pages

The Personal Sequence Database: A suite of tools to create and maintain web-accessible sequence databases

Author keywords

[No Author keywords available]

Indexed keywords

BIOSCIENTISTS; DATA SHARING; SEQUENCE DATA; SEQUENCE DATABASE; SEQUENCE SIMILARITY; TRACKING SYSTEM;

EID: 38949089702     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-479     Document Type: Article
Times cited : (2)

References (29)
  • 1
    • 84886766370 scopus 로고    scopus 로고
    • National Center for Biotechnology Information http://www.ncbi.nlm.nih.gov
  • 3
    • 84886758265 scopus 로고    scopus 로고
    • DNA Data Bank of Japan http://www.ddbj.nig.ac.jp/
  • 4
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417 10.1093/nar/22.22.4673 308517
    • Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22(22):4673-4680. 7984417 10.1093/nar/22.22.4673 308517
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 5
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10508846 10.1101/gr.9.9.868 310812
    • Huang X Madan A CAP3: A DNA sequence assembly program Genome Res 1999, 9(9):868-877. 10508846 10.1101/gr.9.9.868 310812
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 6
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • 9254694 10.1093/nar/25.17.3389 146917
    • Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25(17):3389-3402. 9254694 10.1093/nar/ 25.17.3389 146917
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 7
    • 84886758487 scopus 로고    scopus 로고
    • Personal Sequence Database website http://bioinfo.cgrb.oregonstate.edu/ psd/
  • 8
    • 84886762193 scopus 로고    scopus 로고
    • HTML::Template http://html-template.sourceforge.net/
  • 9
    • 84874652231 scopus 로고    scopus 로고
    • mod_perl
    • mod_perl http://perl.apache.org
  • 10
    • 84886766360 scopus 로고    scopus 로고
    • The Apache HTTP Server Project http://httpd.apache.org
  • 11
    • 84886761844 scopus 로고    scopus 로고
    • MySQL http://www.mysql.com
  • 12
    • 84886754942 scopus 로고    scopus 로고
    • Perl DBI http://dbi.perl.org
  • 13
    • 84886756082 scopus 로고    scopus 로고
    • IEB ToolBox http://www.ncbi.nlm.nih.gov/IEB/ToolBox/MainPage/index.html
  • 14
    • 84886756050 scopus 로고    scopus 로고
    • SOAP-Lite http://search.cpan.org/~byrne/SOAP-Lite-0.69/
  • 16
    • 84886758006 scopus 로고    scopus 로고
    • zlib http://www.zlib.net
  • 17
    • 0028186046 scopus 로고
    • Using the FASTA program to search protein and DNA sequence databases
    • 8205202
    • Pearson WR Using the FASTA program to search protein and DNA sequence databases Methods Mol Biol 1994, 24:307-331. 8205202
    • (1994) Methods Mol Biol , vol.24 , pp. 307-331
    • Pearson, W.R.1
  • 18
    • 84886758349 scopus 로고    scopus 로고
    • NCBI Entrez Help http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid= helpentrez.chapter.EntrezHelp
  • 21
    • 34548751162 scopus 로고    scopus 로고
    • ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets
    • 17586542 10.1093/bioinformatics/btm331
    • Deng W Nickle DC Learn GH Maust B Mullins JI ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user's datasets Bioinformatics 2007, 23(17):2334-2336. 17586542 10.1093/ bioinformatics/btm331
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2334-2336
    • Deng, W.1    Nickle, D.C.2    Learn, G.H.3    Maust, B.4    Mullins, J.I.5
  • 22
    • 18044395974 scopus 로고    scopus 로고
    • Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches
    • 15701178 10.1186/1471-2105-6-23 549547
    • Whitney J Esteban DJ Upton C Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches BMC Bioinformatics 2005, 6:23. 15701178 10.1186/1471-2105-6-23 549547
    • (2005) BMC Bioinformatics , vol.6 , pp. 23
    • Whitney, J.1    Esteban, D.J.2    Upton, C.3
  • 23
    • 33747821749 scopus 로고    scopus 로고
    • The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis
    • Web Server issue 16844980 10.1093/nar/gkl254 1538907
    • Rampp M Soddemann T Lederer H The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis Nucleic Acids Res 2006, 34(Web Server issue):W15-9. 16844980 10.1093/nar/gkl254 1538907
    • (2006) Nucleic Acids Res , vol.34
    • Rampp, M.1    Soddemann, T.2    Lederer, H.3
  • 25
    • 13844253633 scopus 로고    scopus 로고
    • Tracker: Continuous HMMER and BLAST searching
    • 15347577 10.1093/bioinformatics/bti012
    • Marchin M Kelly PT Fang J Tracker: Continuous HMMER and BLAST searching Bioinformatics 2005, 21(3):388-389. 15347577 10.1093/bioinformatics/ bti012
    • (2005) Bioinformatics , vol.21 , Issue.3 , pp. 388-389
    • Marchin, M.1    Kelly, P.T.2    Fang, J.3
  • 26
    • 33847113939 scopus 로고    scopus 로고
    • PLAN: A web platform for automating high-throughput BLAST searches and for managing and mining results
    • 17291345 10.1186/1471-2105-8-53 1800871
    • He J Dai X Zhao X PLAN: A web platform for automating high-throughput BLAST searches and for managing and mining results BMC Bioinformatics 2007, 8:53. 17291345 10.1186/1471-2105-8-53 1800871
    • (2007) BMC Bioinformatics , vol.8 , pp. 53
    • He, J.1    Dai, X.2    Zhao, X.3
  • 27
    • 84874654035 scopus 로고    scopus 로고
    • Marine Microbial Genomics - Center for Genome Research and Biocomputing - Oregon State University
    • Marine Microbial Genomics - Center for Genome Research and Biocomputing - Oregon State University http://bioinfo.cgrb.oregonstate.edu/microbes/
  • 28
    • 84886758506 scopus 로고    scopus 로고
    • The Gene Ontology Project http://www.geneontology.org
  • 29
    • 84886763386 scopus 로고    scopus 로고
    • Pfam Home Page http://www.sanger.ac.uk/Software/Pfam/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.