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Volumn , Issue , 2006, Pages 391-396

Eukaryotic protein subcellular localization based on local pairwise profile alignment SVM

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CLASSIFICATION (OF INFORMATION); DATA ACQUISITION; SUPPORT VECTOR MACHINES;

EID: 38949086488     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/MLSP.2006.275581     Document Type: Conference Paper
Times cited : (10)

References (21)
  • 1
    • 0034048878 scopus 로고    scopus 로고
    • Jaakkola.T., Diekhans,M., and Haussler,D. A discriminative framework for detecting remote protein homologies, J. Compul. Biol., 7, pp. 95-114, 2000.
    • Jaakkola.T., Diekhans,M., and Haussler,D. "A discriminative framework for detecting remote protein homologies," J. Compul. Biol., vol.7, pp. 95-114, 2000.
  • 2
    • 0742287001 scopus 로고    scopus 로고
    • Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships
    • Liao, L., and Noble, W.S. "Combining pairwise sequence similarity and support vector machines for detecting remote protein evolutionary and structural relationships," J. Comput. Biol., vol. 10(6), pp. 857-868, 2003.
    • (2003) J. Comput. Biol , vol.10 , Issue.6 , pp. 857-868
    • Liao, L.1    Noble, W.S.2
  • 3
    • 1542714925 scopus 로고    scopus 로고
    • Mismatch string kernels for discriminative protein classification
    • Leslie, C. S., Eskin, Cohen, A., Eeston, J., and Noble, W.S. "Mismatch string kernels for discriminative protein classification," Bioinformatics, vol. 20(4), pp. 467-476, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 467-476
    • Leslie, C.1    Eskin, S.2    Cohen, A.3    Eeston, J.4    Noble, W.S.5
  • 4
    • 4444273377 scopus 로고    scopus 로고
    • Protein homology detection using string alignment kernels
    • Saigo, H., Vert, J.P., Ueda, N., and Akutsu, T., "Protein homology detection using string alignment kernels," Bioinformatics, vol. 20, pp. 1682-1689, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1682-1689
    • Saigo, H.1    Vert, J.P.2    Ueda, N.3    Akutsu, T.4
  • 5
    • 33646152734 scopus 로고    scopus 로고
    • Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machine
    • In Press
    • Kim, J.K., Raghava, G.P.S, Bang, S.Y., and Choi, S. "Prediction of subcellular localization of proteins using pairwise sequence alignment and support vector machine," Pattern Recog. Lett., In Press.
    • Pattern Recog. Lett
    • Kim, J.K.1    Raghava, G.P.S.2    Bang, S.Y.3    Choi, S.4
  • 6
    • 28444435024 scopus 로고    scopus 로고
    • Support vector machines with profile-based kernels for remote protein homology detection
    • Busuttil, S., Abela, J., and Pace, G.J. "Support vector machines with profile-based kernels for remote protein homology detection," Genome Informatics, vol. 15(2), pp. 191-200, 2004.
    • (2004) Genome Informatics , vol.15 , Issue.2 , pp. 191-200
    • Busuttil, S.1    Abela, J.2    Pace, G.J.3
  • 7
    • 28444492998 scopus 로고    scopus 로고
    • Profile-based direct kernels for remote homology detection and fold recognition
    • Rangwala, H. and Karypis, G. "Profile-based direct kernels for remote homology detection and fold recognition," Bioinformatics, vol. 21, no. 23, pp. 4239-4247, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.23 , pp. 4239-4247
    • Rangwala, H.1    Karypis, G.2
  • 10
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S. and Henikoff, J. G. "Amino acid substitution matrices from protein blocks," Proc. Natl. Acad. Sci., USA 89, pp. 10915-10919, 1992.
    • (1992) Proc. Natl. Acad. Sci., USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 11
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt, A. and Hubbard, T. "Using neural networks for prediction of the subcellular location of proteins," Nucleic Acids Res., vol. 26, pp. 2230-2236, 1998.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 12
    • 0034843744 scopus 로고    scopus 로고
    • Support vector machine approach for protein subcellular localization prediction
    • Hua, S.J. and Sun, Z.R. "Support vector machine approach for protein subcellular localization prediction," Bioinformatics, vol. 17, pp. 721-728, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 721-728
    • Hua, S.J.1    Sun, Z.R.2
  • 13
    • 0347093598 scopus 로고    scopus 로고
    • Prediction of protein subcellular locations using fuzzv k-NN method
    • Huang,Y and Li Y.D. "Prediction of protein subcellular locations using fuzzv k-NN method," Bioinformatics, vol. 20, no. 1, pp. 21-28, 1999.
    • (1999) Bioinformatics , vol.20 , Issue.1 , pp. 21-28
    • Huang, Y.1    Li, Y.D.2
  • 14
    • 3242877807 scopus 로고    scopus 로고
    • ESLpred: SVM based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
    • Bhasin, M. and Raghava, G.P.S. "ESLpred: SVM based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST," Nucleic Acids Res., Webserver Issue, vol. 32, pp. 414-419, 2004.
    • (2004) Nucleic Acids Res., Webserver Issue , vol.32 , pp. 414-419
    • Bhasin, M.1    Raghava, G.P.S.2
  • 15
    • 40849099796 scopus 로고
    • Comparison of biosequences
    • Smith, T.F. and Waterman, M.S. "Comparison of biosequences," Adv. Appl. Math., vol. 2, pp. 482-489, 1981.
    • (1981) Adv. Appl. Math , vol.2 , pp. 482-489
    • Smith, T.F.1    Waterman, M.S.2
  • 16
    • 0031844330 scopus 로고    scopus 로고
    • Fold and function predictions for Mycoplasma genitalium proteins
    • Rychlewski L, Zhang B, Godzik A. "Fold and function predictions for Mycoplasma genitalium proteins," Fold Des., vol. 3(4), pp. 229-238, 1998.
    • (1998) Fold Des , vol.3 , Issue.4 , pp. 229-238
    • Rychlewski, L.1    Zhang, B.2    Godzik, A.3
  • 17
    • 0037255072 scopus 로고    scopus 로고
    • Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gastciger, E., Martin, M.J., Michoud, K.O'Donovan, C., Phan, I., Pilbout, S., and Schneider, M. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003, Nucleic Acids Res., 31, pp. 365-370, 2003.
    • Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gastciger, E., Martin, M.J., Michoud, K.O'Donovan, C., Phan, I., Pilbout, S., and Schneider, M. "The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003," Nucleic Acids Res., vol. 31, pp. 365-370, 2003.
  • 18
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh, O. "An improved algorithm for matching biological sequences," J. Mol. Biol., vol. 162, pp. 705-708, 1982.
    • (1982) J. Mol. Biol , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 19
    • 0016772212 scopus 로고
    • Comparison of predicted and observed secondary structure of T4 phage lysozyme
    • Matthews, B.W. "Comparison of predicted and observed secondary structure of T4 phage lysozyme," Biochim. Biophys. Acta, vol. 405, pp. 442-451, 1975.
    • (1975) Biochim. Biophys. Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 20
    • 38949120686 scopus 로고    scopus 로고
    • http://www.eie.polyu.edu.hk/~mwmak/BSIG/PairProSVM.htm.
  • 21
    • 38949087665 scopus 로고    scopus 로고
    • http://www.kyb.tuebingen.mpg.de/bs/people/spider/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.