메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

A response to Yu et al. "A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array", BMC Bioinformatics 2007, 8: 145

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC AMPLIFICATION; HIDDEN MARKOV; MARKOV CHAIN MONTE; MARKOV CHAIN MONTE CARLO METHOD; MARKOV CHAIN MONTE-CARLO; NUMBER OF ITERATIONS; REFERENCE LEVELS; SINGLE NUCLEOTIDE POLYMORPHISM ARRAYS;

EID: 38849187801     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-394     Document Type: Note
Times cited : (3)

References (25)
  • 1
    • 34248660286 scopus 로고    scopus 로고
    • A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array
    • 1868765 17477871
    • Yu T Ye H Sun W Li KC Chen Z Jacobs S Bailey DK Wong DT Zhou X A forward-backward fragment assembling algorithm for the identification of genomic amplification and deletion breakpoints using high-density single nucleotide polymorphism (SNP) array BMC Bioinformatics 2007, 8:145. 1868765 17477871
    • (2007) BMC Bioinformatics , vol.8 , pp. 145
    • Yu, T.1    Ye, H.2    Sun, W.3    Li, K.C.4    Chen, Z.5    Jacobs, S.6    Bailey, D.K.7    Wong, D.T.8    Zhou, X.9
  • 2
    • 3543105225 scopus 로고    scopus 로고
    • Circular binary segmentation for the analysis of array-based DNA copy number data
    • 15475419
    • Olshen AB Venkatraman ES Lucito R Wigler M Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 2004, 5:557-572. 15475419
    • (2004) Biostatistics , vol.5 , pp. 557-572
    • Olshen, A.B.1    Venkatraman, E.S.2    Lucito, R.3    Wigler, M.4
  • 3
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: From signal ratio to gain and loss of DNA regions
    • 15381628
    • Hup'e P Stransky N Thiery JP Radvanyi F Barillot E Analysis of array CGH data: From signal ratio to gain and loss of DNA regions Bioinformatics 2004, 20:3413-3422. 15381628
    • (2004) Bioinformatics , vol.20 , pp. 3413-3422
    • Hup'e, P.1    Stransky, N.2    Thiery, J.P.3    Radvanyi, F.4    Barillot, E.5
  • 6
    • 33646163019 scopus 로고    scopus 로고
    • BioHMM: A heterogeneous hidden Markov model for segmenting array CGH data
    • 16533818
    • Marioni JC Thorne NP Tavar'e S BioHMM: A heterogeneous hidden Markov model for segmenting array CGH data Bioinformatics 2006, 22:1144-1146. 16533818
    • (2006) Bioinformatics , vol.22 , pp. 1144-1146
    • Marioni, J.C.1    Thorne, N.P.2    Tavar'e, S.3
  • 7
    • 34347342852 scopus 로고    scopus 로고
    • Flexible and accurate detection of genomic copy-number changes from aCGH
    • 1894821 17590078
    • Rueda OM Díaz-Uriarte R Flexible and accurate detection of genomic copy-number changes from aCGH PLoS Comput Biol 2007, 3(6):e122. 1894821 17590078
    • (2007) PLoS Comput Biol , vol.3 , Issue.6
    • Rueda, O.M.1    Díaz-Uriarte, R.2
  • 8
    • 32644441984 scopus 로고    scopus 로고
    • BAC to the future! Or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH)
    • 1356528 16439806
    • Ylstra B van den Ijssel P Carvalho B Brakenhoff RH Meijer GA BAC to the future! Or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH) Nucleic Acids Res 2006, 34:445-450. 1356528 16439806
    • (2006) Nucleic Acids Res , vol.34 , pp. 445-450
    • Ylstra, B.1    van den Ijssel, P.2    Carvalho, B.3    Brakenhoff, R.H.4    Meijer, G.A.5
  • 9
    • 20044375763 scopus 로고    scopus 로고
    • Array comparative genomic hybridization and its applications in cancer
    • 15920524
    • Pinkel D Albertson DG Array comparative genomic hybridization and its applications in cancer Nat Genet 2005, 37(Suppl):S11-S17. 15920524
    • (2005) Nat Genet , vol.37 , Issue.SUPPL.
    • Pinkel, D.1    Albertson, D.G.2
  • 10
    • 31344457934 scopus 로고    scopus 로고
    • Recent advances in array comparative genomic hybridization technologies and their applications in human genetics
    • 16288307
    • Lockwood WW Chari R Chi B Lam WL Recent advances in array comparative genomic hybridization technologies and their applications in human genetics Eur J Hum Genet 2006, 14(2):139-148. 16288307
    • (2006) Eur J Hum Genet , vol.14 , Issue.2 , pp. 139-148
    • Lockwood, W.W.1    Chari, R.2    Chi, B.3    Lam, W.L.4
  • 15
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green P Reversible jump Markov chain Monte Carlo computation and Bayesian model determination Biometrika 1995, 7:11-732.
    • (1995) Biometrika , vol.7 , pp. 11-732
    • Green, P.1
  • 19
    • 84886757833 scopus 로고    scopus 로고
    • Scripts for analysis http://ligarto.org/rdiaz/ R-code-reponse-Yu-BMC-Bioinfo.tar.gz
    • Scripts for Analysis
  • 20
    • 27944455289 scopus 로고    scopus 로고
    • A comparison study: Applying segmentation to array CGH data for downstream analyses
    • 16159913
    • Willenbrock H Fridlyand J A comparison study: Applying segmentation to array CGH data for downstream analyses Bioinformatics 2005, 21:4084-4091. 16159913
    • (2005) Bioinformatics , vol.21 , pp. 4084-4091
    • Willenbrock, H.1    Fridlyand, J.2
  • 21
    • 27544483495 scopus 로고    scopus 로고
    • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    • 16081473
    • Lai WRR Johnson MDD Kucherlapati R Park PJJ Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data Bioinformatics 2005, 21:3763-3770. 16081473
    • (2005) Bioinformatics , vol.21 , pp. 3763-3770
    • Lai, W.R.R.1    Johnson, M.D.D.2    Kucherlapati, R.3    Park, P.J.J.4
  • 24
    • 12444275662 scopus 로고    scopus 로고
    • A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data
    • 15680585
    • Lai Y Zhao H A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data Comput Biol Chem 2005, 29:47-54. 15680585
    • (2005) Comput Biol Chem , vol.29 , pp. 47-54
    • Lai, Y.1    Zhao, H.2
  • 25
    • 34248631866 scopus 로고    scopus 로고
    • A flexible, accurate and extensible statistical method for detecting genomic copy-number changes
    • Rueda OM Diaz-Uriarte R A flexible, accurate and extensible statistical method for detecting genomic copy-number changes COBRA Preprint Series 2006,9:.
    • (2006) COBRA Preprint Series , vol.9
    • Rueda, O.M.1    Diaz-Uriarte, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.