DNA repair single-nucleotide polymorphisms in colorectal cancer and their role as modifiers of the effect of cigarette smoking and alcohol in the Singapore Chinese Health Study

Cancer Epidemiology Biomarkers and Prevention

Volumn 16, Issue 11, 2007, Pages 2363-2372

  Stern, Mariana C ^a   Conti, David V ^a   Siegmund, Kimberly D ^a   Corral, Román ^a   Yuan, Jian Min ^c   Koh, Woon Puay ^b   Yu, Mimi C ^c  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^b NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ALCOHOL; ARGININE; ASPARAGINE; ASPARTIC ACID; CYSTEINE; GLUTAMINE; LEUCINE; LYSINE; METHYLATED DNA PROTEIN CYSTEINE METHYLTRANSFERASE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; PHENYLALANINE; PROTEIN; PROTEIN OGG1; REACTIVE OXYGEN METABOLITE; SERINE; TRYPTOPHAN; UNCLASSIFIED DRUG; VALINE; XRCC1 PROTEIN;

ADULT; AGED; ALCOHOL CONSUMPTION; ARTICLE; CANCER RISK; CHINESE; CIGARETTE SMOKING; CODON; COHORT ANALYSIS; COLON CANCER; COLORECTAL CANCER; CONFIDENCE INTERVAL; CONTROLLED STUDY; DNA REPAIR; DRINKING BEHAVIOR; FEMALE; GENETIC ASSOCIATION; GENOTYPE; HAPLOTYPE; HETEROZYGOTE; HUMAN; MAJOR CLINICAL STUDY; MALE; POPULATION RESEARCH; PRIORITY JOURNAL; RECTUM CANCER; SINGAPORE; SINGLE NUCLEOTIDE POLYMORPHISM; TOBACCO;

AGED; ALCOHOL DRINKING; CASE-CONTROL STUDIES; COHORT STUDIES; COLORECTAL NEOPLASMS; DNA REPAIR; DNA-BINDING PROTEINS; FEMALE; GENOTYPE; HUMANS; MALE; MIDDLE AGED; POLYMORPHISM, SINGLE NUCLEOTIDE; REACTIVE OXYGEN SPECIES; RISK FACTORS; SINGAPORE; SMOKING;

EID: 38849185186     PISSN: 10559965     EISSN: None     Source Type: Journal    
DOI: 10.1158/1055-9965.EPI-07-0268     Document Type: Article

References (51)

1. Seow A, Koh WP, Chia KS, et al. Trends in cancer incidence in Singapore, 1968-2002: Singapore Cancer Registry report no. 6; 2004.
2. Tsong WH, Koh WP, Yuan JM, et al. Cigarettes and alcohol in relation to colorectal cancer: the Singapore Chinese Health Study. Br J Cancer 2007;96:821-7.
3. Aoki K, Ito Y, Sasaki R, et al. Smoking, alcohol drinking and serum carotenoids levels. Jpn J Cancer Res 1987;78:1049-56.
4. Ye YN, Wu WK, Shin VY, et al. A mechanistic study of colon cancer growth promoted by cigarette smoke extract. Eur J Pharmacol 2005;519:52-7.
5. Baron JA, Sandler RS, Haile RW, et al. Folate intake, alcohol consumption, cigarette smoking, and risk of colorectal adenomas. J Natl Cancer Inst 1998;90:57-62.
6. Friedberg EC, Walker GC, and Siede W. DNA repair and mutagenesis. Washington (DC): ASM press; 2006.
7. Seitz HK, Simanowski UA. Ethanol and carcinogenesis of the alimentary tract. Alcohol Clin Exp Res 1986;10:33-40S.
8. Brooks PJ, Theruvathu JA. DNA adducts from acetaldehyde: implications for alcohol-related carcinogenesis. Alcohol 2005;35:187-93.
9. Seitz HK, Maurer B, Stickel F. Alcohol consumption and cancer of the gastrointestinal tract. Dig Dis 2005;23:297-303.
10. Velez-Cruz R, Riggins JN, Daniels JS, et al. Exocyclic DNA lesions stimulate DNA cleavage mediated by human topoisomerase II α in vitro and in cultured cells. Biochemistry 2005;44:3972-81.
11. Blasiak J. Ethanol and acetaldehyde impair the repair of bleomycin-damaged DNA in human lymphocytes. Cytobios 2001;106 Suppl 2: 141-9.
12. Singletary KW, Barnes SL, van Breemen RB. Ethanol inhibits benzo(a)pyrene-DNA adduct removal and increases 8-oxo-deoxyguanosine formation in human mammary epithelial cells. Cancer Lett 2004;203:139-44.
13. Hankin JH, Stram DO, Arakawa K, et al. Singapore Chinese health study: development, validation, and calibration of the quantitative food frequency questionnaire. Nutr Cancer 2001;39:187-95.
14. Parkin DM, Whelan SL, Ferlay J, et al. Cancer Incidence in Five Continents. Vol. VII. Lyon: IARC; 2002.
15. Koh WP, Yuan JM, Sun CL, et al. Angiotensin I-converting enzyme (ACE) gene polymorphism and breast cancer risk among Chinese women in Singapore. Cancer Res 2003;63:573-8.
16. Seow A, Shi CY, Chung FL, et al. Urinary total isothiocyanate (ITC) in a population-based sample of middle-aged and older Chinese in Singapore: relationship with dietary total ITC and glutathione S-transferase M1/T1/P1 genotypes. Cancer Epidemiol Biomarkers Prev 1998;7:775-81.
17. Seow A, Shi CY, Franke AA, et al. Isoflavonoid levels in spot urine are associated with frequency of dietary soy intake in a population-based sample of middle-aged and older Chinese in Singapore. Cancer Epidemiol Biomarkers Prev 1998;7:135-40.
18. Wong HL, Delellis K, Probst-Hensch N, et al. A new single nucleotide polymorphism in the insulin-like growth factor I regulatory region associates with colorectal cancer risk in singapore chinese. Cancer Epidemiol Biomarkers Prev 2005;14:144-51.
19. Hastie T, Tibshirani RJ, Friedman JH. The Elements of Statistical Learning: Data Mining, Inference, and Prediction. Springer-Verlag; 2003.
20. Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 1995;12:921-7.
21. Stram DO, Haiman CA, Hirschhorn JN, et al. Choosing haplotype - tagging SNPS based on unphased genotype data using a preliminary sample of unrelated subjects with an example from the Multiethnic Cohort Study. Hum Hered 2003;55:27-36.
22. Benjamini Y, Hochberg Y. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc 1995;57:289-300.
23. Zhang X, Miao X, Liang G, et al. Polymorphisms in DNA base excision repair genes ADPRT and XRCC1 and risk of lung cancer. Cancer Res 2005;65:722-6.
24. Hao B, Wang H, Zhou K, et al. Identification of genetic variants in base excision repair pathway and their associations with risk of esophageal squamous cell carcinoma. Cancer Res 2004;64:4378-84.
25. Lockett KL, Hall MC, Xu J, et al. The ADPRT V762A genetic variant contributes to prostate cancer susceptibility and deficient enzyme function. Cancer Res 2004;64:6344-8.
26. Wang XG, Wang ZQ, Tong WM, et al. PARP1 Val762Ala polymorphism reduces enzymatic activity. Biochem Biophys Res Commun 2007;354:122-6.
27. Jeggo PA. DNA repair: PARP - another guardian angel? Curr Biol 1998;8:R49-51.
28. Ziegler M, Oei SL. A cellular survival switch: poly(ADP-ribosyl)ation stimulates DNA repair and silences transcription. Bioessays 2001;23:543-8.
29. Idogawa M, Yamada T, Honda K, et al. Poly(ADP-ribose) polymerase-1 is a component of the oncogenic T-cell factor-4/β-catenin complex. Gastroenterology 2005;128:1919-36.
30. Nosho K, Yamamoto H, Mikami M, et al. Overexpression of poly(ADP-ribose) polymerase-1 (PARP-1) in the early stage of colorectal carcinogenesis. Eur J Cancer 2006;42:2374-81.
31. Moreno V, Gemignani F, Landi S, et al. Polymorphisms in genes of nucleotide and base excision repair: risk and prognosis of colorectal cancer. Clin Cancer Res 2006;12:2101-8.
32. Hansen R, Saebo M, Skjelbred CF, et al. GPX Pro198Leu and OGG1 Ser326Cys polymorphisms and risk of development of colorectal adenomas and colorectal cancer. Cancer Lett 2005.
33. Kohno T, Shinmura K, Tosaka M, et al. Genetic polymorphisms and alternative splicing of the hOGG1 gene, that is involved in the repair of 8-hydroxyguanine in damaged DNA. Oncogene 1998;16:3219-25.
34. Dherin C, Radicella JP, Dizdaroglu M, et al. Excision of oxidatively damaged DNA bases by the human α-hOgg1 protein and the polymorphic α-hOgg1(Ser326Cys) protein which is frequently found in human populations. Nucleic Acids Res 1999;27:4001-7.
35. Hong YC, Lee KH, Kim WC, et al. Polymorphisms of XRCC1 gene, alcohol consumption and colorectal cancer. Int J Cancer 2005;116:428-32.
36. Yeh CC, Sung FC, Tang R, et al. Polymorphisms of the XRCC1, XRCC3, & XPD genes, and colorectal cancer risk: a case-control study in Taiwan. BMC Cancer 2005;5:12.
37. Skjelbred CF, Saebo M, Wallin H, et al. Polymorphisms of the XRCC1, XRCC3 and XPD genes and risk of colorectal adenoma and carcinoma, in a Norwegian cohort: a case control study. BMC Cancer 2006;6:67.
38. Abdel-Rahman SZ, Soliman AS, Bondy ML, et al. Inheritance of the 194Trp and the 399Gln variant alleles of the DNA repair gene XRCC1 are associated with increased risk of early-onset colorectal carcinoma in Egypt. Cancer Lett 2000;159:79-86.
39. Caldecott KW. Protein-protein interactions during mammalian DNA single-strand break repair. Biochem Soc Trans 2003;31:247-51.
40. Hung RJ, Hall J, Brennan P, et al. Genetic polymorphisms in the base excision repair pathway and cancer risk: a HuGE review. Am J Epidemiol 2005;162:925-42.
41. Stern MC, Siegmund KD, Conti DV, Haile RW. XRCC1, XRCC3, and XPD polymorphisms as modifiers of the effect of smoking and alcohol on colorectal adenoma risk. Cancer Epidemiol Biomarkers Prev 2006;15:2384-90.
42. Takanami T, Nakamura J, Kubota Y, et al. The Arg280His polymorphism in X-ray repair cross-complementing gene 1 impairs DNA repair ability. Mutat Res 2005;582:135-45.
43. Taylor RM, Thistlethwaite A, Caldecott KW. Central role for the XRCC1 BRCT I domain in mammalian DNA single-strand break repair. Mol Cell Biol 2002;22:2556-63.
44. Mort R, Mo L, McEwan C, et al. Lack of involvement of nucleotide excision repair gene polymorphisms in colorectal cancer. Br J Cancer 2003;89:333-7.
45. Benhamou S, Sarasin A. ERCC2/XPD gene polymorphisms and lung cancer: a HuGE review. Am J Epidemiol 2005;161:1-14.
46. Bigler J, Ulrich CM, Kawashima T, et al. DNA repair polymorphisms and risk of colorectal adenomatous or hyperplastic polyps. Cancer Epidemiol Biomarkers Prev 2005;14:2501-8.
47. Huang WY, Berndt SI, Kang D, et al. Nucleotide excision repair gene polymorphisms and risk of advanced colorectal adenoma: XPC polymorphisms modify smoking-related risk. Cancer Epidemiol Biomarkers Prev 2006;15:306-11.
48. 6-methylguanine-DNA methyltransferase Leu84Phe and Ile143Val polymorphisms and risk of colorectal cancer in the Nurses' Health Study and Physicians' Health Study (United States). Cancer Causes Control 2006;17:721-31.
49. Bugni JM, Han J, Tsai M-S, Hunter DJ, Samson LD. Genetic association and functional studies of major polymorphic variants of MGMT. DNA Repair (Amst) 2007;6:1116-26.
50. Conti DV, Gauderman WJ. SNPs, haplotypes, and model selection in a candidate gene region: the SIMPle analysis for multilocus data. Genet Epidemiol 2004;27:429-41.
51. Kass R, Raftery AE. Bayes factors. J Am Stat Assoc 1995;90:773-95.