메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

BGX: A bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE MARKOV CHAIN MONTE CARLO; BACKGROUND CORRECTION; BAYESIAN APPROACHES; EXPRESSION LEVELS; INTEGRATED ANALYSIS; MEASURE OF UNCERTAINTY; MULTIPLICATIVE ERRORS; POSTERIOR DISTRIBUTIONS;

EID: 38849086758     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-439     Document Type: Article
Times cited : (22)

References (19)
  • 1
    • 24644473482 scopus 로고    scopus 로고
    • BGX: A fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
    • 10.1093/biostatistics/kxi016 15831583
    • Hein AMK Richardson S Causton HC Ambler GK Green PJ BGX: A fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data Biostatistics 2005, 6(3):349-373. 10.1093/biostatistics/kxi016 15831583
    • (2005) Biostatistics , vol.6 , Issue.3 , pp. 349-373
    • Hein, A.M.K.1    Richardson, S.2    Causton, H.C.3    Ambler, G.K.4    Green, P.J.5
  • 2
    • 33749386597 scopus 로고    scopus 로고
    • A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
    • 1586027 16857053 10.1186/1471-2105-7-353
    • Hein AMK Richardson S A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates BMC Bioinformatics 2006, 7:353. 1586027 16857053 10.1186/1471-2105-7-353
    • (2006) BMC Bioinformatics , vol.7 , pp. 353
    • Hein, A.M.K.1    Richardson, S.2
  • 3
    • 85035214096 scopus 로고    scopus 로고
    • Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays
    • 12935175
    • Naef F Magnasco MO Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays Phys Rev E Stat Nonlin Soft Matter Phys 2003, 68(1 Pt 1):011906. 12935175
    • (2003) Phys Rev E Stat Nonlin Soft Matter Phys , vol.68 , Issue.1 PART 1 , pp. 011906
    • Naef, F.1    Magnasco, M.O.2
  • 5
  • 6
    • 85007380142 scopus 로고    scopus 로고
    • Coupling and Ergodicity of Adaptive MCMC
    • [To appear]
    • Roberts GO Rosenthal JS Coupling and Ergodicity of Adaptive MCMC Journal of Applied Probability 2005 http://www.probability.ca/jeff/ftpdir/ adapt.pdf. [To appear]
    • (2005) Journal of Applied Probability
    • Roberts, G.O.1    Rosenthal, J.S.2
  • 8
    • 0031285157 scopus 로고    scopus 로고
    • Weak Convergence and Optimal Scaling of Random Walk Metropolis Algorithms
    • 10.1214/aoap/1034625254
    • Roberts GO Gelman A Gilks WR Weak Convergence and Optimal Scaling of Random Walk Metropolis Algorithms The Annals of Applied Probability 1997, 7:110-120. 10.1214/aoap/1034625254
    • (1997) The Annals of Applied Probability , vol.7 , pp. 110-120
    • Roberts, G.O.1    Gelman, A.2    Gilks, W.R.3
  • 9
    • 0013037129 scopus 로고    scopus 로고
    • Optimal Scaling for Various Metropolis-Hastings Algorithms
    • 10.1214/ss/1015346320
    • Roberts GO Rosenthal JS Optimal Scaling for Various Metropolis-Hastings Algorithms Statistical Science 2001, 16(4):351-367. 10.1214/ss/1015346320
    • (2001) Statistical Science , vol.16 , Issue.4 , pp. 351-367
    • Roberts, G.O.1    Rosenthal, J.S.2
  • 11
    • 84874651592 scopus 로고    scopus 로고
    • Boost C++ Libraries
    • Boost C++ Libraries http://boost.org
  • 12
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
    • 551536 15693945 10.1186/gb-2005-6-2-r16
    • Choe SE Boutros M Michelson AM Church GM Halfon MS Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset Genome Biol 2005, 6(2):R16. 551536 15693945 10.1186/ gb-2005-6-2-r16
    • (2005) Genome Biol , vol.6 , Issue.2
    • Choe, S.E.1    Boutros, M.2    Michelson, A.M.3    Church, G.M.4    Halfon, M.S.5
  • 14
    • 0000817942 scopus 로고
    • Confidence intervals in discrete event simulation: A comparison of replication and batch means
    • 10.1002/nav.3800240414
    • Law AM Confidence intervals in discrete event simulation: A comparison of replication and batch means Naval Res Logistics Quart 1977, 23:667-678. 10.1002/nav.3800240414
    • (1977) Naval Res Logistics Quart , vol.23 , pp. 667-678
    • Law, A.M.1
  • 16
    • 1342330572 scopus 로고    scopus 로고
    • A benchmark for Affymetrix GeneChip expression measures
    • 10.1093/bioinformatics/btg410 14960458
    • Cope LM Irizarry RA Jaffee HA Wu Z Speed TP A benchmark for Affymetrix GeneChip expression measures Bioinformatics 2004, 20(3):323-331. 10.1093/ bioinformatics/btg410 14960458
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 323-331
    • Cope, L.M.1    Irizarry, R.A.2    Jaffee, H.A.3    Wu, Z.4    Speed, T.P.5
  • 17
    • 33749039114 scopus 로고    scopus 로고
    • New Spiked-In Probe Sets for the Affymetrix HGU-133A Latin Square Experiment
    • McGee M Chen Z New Spiked-In Probe Sets for the Affymetrix HGU-133A Latin Square Experiment COBRA Preprint Series 2006.
    • (2006) COBRA Preprint Series
    • McGee, M.1    Chen, Z.2
  • 18
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249 12925520
    • Irizarry RA Hobbs B Collin F Beazer-Barclay YD Antonellis KJ Scherf U Speed TP Exploration, normalization, and summaries of high density oligonucleotide array probe level data Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249 12925520
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5    Scherf, U.6    Speed, T.P.7
  • 19
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • 100354 11842121 10.1093/nar/30.4.e15
    • Yang YH Dudoit S Luu P Lin DM Peng V Ngai J Speed TP Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucl Acids Res 2002, 30(4):e15. 100354 11842121 10.1093/nar/30.4.e15
    • (2002) Nucl Acids Res , vol.30 , Issue.4
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.