Global genomic analysis of Pseudomonas savastanoi pv. savastanoi plasmids

Journal of Bacteriology

Volumn 190, Issue 2, 2008, Pages 625-635

  Pérez Martínez, Isabel ^a   Zhao, Youfu ^b   Murillo, Jesús ^c   Sundin, George W ^d   Ramos, Cayo ^a  

^a UNIVERSITY OF MÁLAGA   (Spain)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c PUBLIC UNIVERSITY OF NAVARRE   (Spain)

^d MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INDOLEACETIC ACID; VIRULENCE FACTOR; BACTERIAL DNA; CARRIER PROTEIN; CYTOKININ; DNA BINDING PROTEIN; HELICASE; REPLICATION INITIATOR PROTEIN; TRANSACTIVATOR PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BIOSYNTHESIS; DNA DETERMINATION; EVOLUTIONARY ADAPTATION; GENE; GENE INSERTION SEQUENCE; GENETIC ANALYSIS; GENOMICS; HYBRIDIZATION; MOSAICISM; NUCLEOTIDE SEQUENCE; OLIVE; PATHOGENESIS; PLASMID; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS SAVASTANOI; PTZ GENE; SAVASTANOI PLASMID; BACTERIAL GENE; GENETICS; METHODOLOGY; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; OLIVE TREE; PHYSIOLOGY; TRANSPOSON;

PSEUDOMONAS SAVASTANOI; PSEUDOMONAS SYRINGAE;

CYTOKININS; DNA HELICASES; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DNA-BINDING PROTEINS; GENES, BACTERIAL; MEMBRANE TRANSPORT PROTEINS; NUCLEIC ACID HYBRIDIZATION; OLEA; PLASMIDS; PSEUDOMONAS; TRANS-ACTIVATORS; VIRULENCE FACTORS;

EID: 38749136319     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01067-07     Document Type: Article

References (47)

1. Akiyoshi, D. E., D. A. Regier, and M. P. Gordon. 1987. Cytokinin production by Agrobacterium and Pseudomonas spp. J. Bacteriol. 169:4242-4248.
2. Alarcon-Chaidez, F. J., A. Penaloza-Vazquez, M. Ullrich, and C. L. Bender. 1999. Characterization of plasmids encoding the Phytotoxin coronatine in Pseudomonas syringae. Plasmid 42:210-220.
3. Bender, C. L., and D. A. Cooksey. 1986. Indigenous plasmids in Pseudomonas syringae pv. tomato: conjugative transfer and role in copper resistance. J. Bacteriol. 165:534-541.
4. Buell, C. R., V. Joardar, M. Lindeberg, J. Selengut, I. T. Paulsen, M. L. Gwinn, R. J. Dodson, R. T. Deboy, A. S. Durkin, J. F. Kolonay, R. Madupu, S. Daugherty, L. Brinkac, M. J. Beanan, D. H. Haft, W. C. Nelson, T. Davidsen, N. Zafar, L. W. Zhou, J. Liu, Q. P. Yuan, H. Khouri, N. Fedorova, B. Tran, D. Russell, K. Berry, T. Utterback, S. E. Van Aken, T. V. Feldblyum, M. D'Ascenzo, W. L. Deng, A. R. Ramos, J. R. Alfano, S. Cartinhour, A. K. Chatterjee, T. P. Delaney, S. G. Lazarowitz, G. B. Martin, D. J. Schneider, X. Y. Tang, C. L. Bender, O. White, C. M. Fraser, and A. Collmer. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 100:10181-10186.
5. Caponero, A., A. M. Contesini, and N. S. Iacobellis. 1995. Population diversity of Pseudomonas syringae subsp. savastanoi on olive and oleander. Plant Pathol. 44:848-855.
6. Caecales, E., and P. J. Christie. 2003. The versatile bacterial type IV secretion systems. Nat. Rev. Microbiol. 1:137-149.
7. Christie, P. J. 2001. Type IV secretion: intercellular transfer of macromolecuies by systems ancestrally related to conjugation machines. Mol. Microbiol. 40:294-305.
8. Comai, L., and T. Kosuge. 1980. Involvement of plasmid deoxyribonucleic acid in indoleacetic acid synthesis in Pseudomonas savastanoi. J. Bacteriol. 143:950-957.
9. Comai, L., and T. Kosuge. 1983. Transposable element that causes mutations in a plant pathogenic Pseudomonas sp. J. Bacteriol. 154:1162-1167.
10. Comai, L., G. Surico, and T. Kosuge. 1982. Relation of plasmid DNA to indoleacetic acid production in different strains of Pseudomonas syringae pv. savastanoi. J. Gen. Microbiol. 128:2157-2163.
11. Coplin, D. L. 1989. Plasmids and their role in the evolution of plant pathogenic bacteria. Annu. Rev. Phytopathol. 27:187-212.
12. Engledow, A. S., E. G. Medrano, E. Mahenthiralingam, J. J. LiPuma, and C. F. Gonzalez. 2004. Involvement of a plasmid-encoded type IV secretion system in the plant tissue watersoaking phenotype of Burkholderia cenocepacia. J. Bacteriol. 186:6015-6024.
13. Feil, H., W. S. Feil, P. Chain, F. Larimer, G. DiBartolo, A. Copeland, A. Lykidis, S. Trong, M. Nolan, E. Goltsman, J. Thiel, S. Malfatti, J. E. Loper, A. Lapidus, J. C. Detter, M. Land, P. M. Richardson, N. C. Kyrpides, N. Ivanova, and S. E. Lindow. 2005. Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 102:11064-11069.
14. Gardan, L., C. Bollet, M. Abughorrah, F. Grimont, and P. A. D. Grimont. 1992. DNA relatedness among the pathovar strains of Pseudomonas syringae subsp. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov. Int. J. Syst. Bacteriol. 42:606-612.
15. Gibbon, M. J., A. Sesma, A. Canal, J. R. Wood, E. Hidalgo, J. Brown, A. Vivian, and J. Murillo. 1999. Replication regions from plant-pathogenic Pseudomonas syringae plasmids are similar to ColE2-related replicons. Microbiology 145:325-334.
16. Glass, N. L., and T. Kosuge. 1986. Cloning of the gene for indoleacetic acid-lysine synthetase from Pseudomonas syringae subsp. savastanoi. J. Bacteriol. 166:598-603.
17. Glass, N. L., and T. Kosuge. 1988. Role of indoleacetic acid lysine synthetase in regulation of indoleacetic acid pool size and virulence of Pseudomonas syringae subsp. savastanoi. J. Bacteriol. 170:2367-2373.
18. Hirano, S. S., and C. D. Upper. 2000. Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae - a pathogen, ice nucleus, and epiphyte. Microbiol. Mol. Biol. Rev. 64:624-653.
19. Iacobellis, N. S., A. Caponero, and A. Evidente. 1998. Characterization of Pseudomonas syringae ssp. savastanoi strains isolated from ash. Plant Pathol. 47:73-83.
20. Jackson, R. W., E. Athanassopoulos, G. Tsiamis, J. W. Mansfield, A. Sesma, D. L. Arnold, M. J. Gibbon, J. Murillo, J. D. Taylor, and A. Vivian. 1999. Identification of a pathogenicity island, which contains genes for virulence and avirulence, on a large native plasmid in the bean pathogen Pseudomonas syringae pathovar phaseolicola. Proc. Natl. Acad. Sci. USA 96:10875-10880.
21. Jackson, R. W., J. W. Mansfield, H. Ammouneh, L. C. Dutton, B. Wharton, A. Ortiz-Barredo, D. L. Arnold, G. Tsiamis, A. Sesma, D. Butcher, J. Boch, Y. J. Kim, G. B. Martin, S. Tegli, J. Murillo, and A. Vivian. 2002. Location and activity of members of a family of virPphA homologues in pathovars of Pseudomonas syringae and P. savastanoi. Mol. Plant Pathol. 3:205-216.
22. Joardar, V., M. Lindeberg, R. W. Jackson, J. Selengut, R. Dodson, L. M. Brinkac, S. C. Daugherty, R. DeBoy, A. S. Durkin, M. G. Giglio, R. Madupu, W. C. Nelson, M. J. Rosovitz, S. Sullivan, J. Crabtree, T. Creasy, T. Davidsen, D. H. Haft, N. Zafar, L. W. Zhou, R. Halpin, T. Holley, H. Khouri, T. Feldblyum, O. White, C. M. Fraser, A. K. Chatterjee, S. Cartinhour, D. J. Schneider, J. Mansfield, A. Collmer, and C. R. Buell. 2005. Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J. Bacteriol. 187:6488-6498.
23. Kennelly, M. M., F. M. Cazorla, A. de Vicente, C. Ramos, and G. W. Sundin. 2007. Pseudomonas syringae diseases of fruit trees: progress toward understanding and control. Plant Dis. 91:4-17.
24. Ma, Z. H., J. J. Smith, Y. F. Zhao, R. W. Jackson, D. L. Arnold, J. Murillo, and G. W. Sundin. 2007. Phylogenetic analysis of the pPT23A plasmid family of Pseudomonas syringae. Appl. Environ. Microbiol 73:1287-1295.
25. Macdonald, E. M. S., G. K. Powell, D. A. Regier, N. L. Glass, F. Roberto, T. Kosuge, and R. O. Morris. 1986. Secretion of zeatin, ribosyizeatin, and ribosyl-1″-methylzeatin by Pseudomonas savastanoi: plasmid-coded cytokinin biosynthesis. Plant Physiol. 82:742-747.
26. Murillo, J., D. Butcher, R. W. Jackson, G. W. Sundin, A. Vivian, and D. L. Arnold. 2003. Methods for the identification of virulence genes in P. syringae. Kluwer Academic Publishers, Dordrecht, The Netherlands.
27. Murillo, J., and N. T. Keen. 1994. Two native plasmids of Pseudomonas syringae pathovar tomato strain PT23 share a large amount of repeated DNA, including replication sequences. Mol. Microbiol. 12:941-950.
28. Penyalver, R., A. Garcia, A. Ferrer, E. Bertolini, and M. M. Lopez. 2000. Detection of Pseudomonas savastanoi pv. savastanoi in olive plants by enrichment and PCR. Appl. Environ. Microbiol. 66:2673-2677.
29. Perez-Martinez, I., L. Rodriguez-Moreno, I. M. Matas, and C. Ramos. 2007. Strain selection and improvement of gene transfer for genetic manipulation of Pseudomonas savastanoi isolated from olive knots. Res. Microbiol. 158: 60-69.
30. Powell, G. K., and R. O. Morris. 1986. Nucleotide sequence and expression of a Pseudomonas savastanoi cytokinin biosynthetic gene: homology with Agrobacterium tumefaciens tmr and tzs loci. Nucleic Acids Res. 14:2555-2565.
31. Rehmer, L., S. Kjemtrup, P. Marchesini, and J. L. Dangl. 2003. Nucleotide sequence, functional characterization and evolution of pFKN, a virulence plasmid in Pseudomonas syringae pathovar maculicola. Mol. Microbiol. 47:1545-1562.
32. Sambrook, J., and D. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. Silverstone, S. E., D. G. Gilchrist, R. M. Bostock, and T. Kosuge. 1993. The 73-Kb pIAA plasmid increases competitive fitness of Pseudomonas syringae subspecies savastanoi in oleander. Can. J. Microbiol. 39:659-664.
34. Sisto, A., M. G. Cipriani, and M. Morea. 2004. Knot formation caused by Pseudomonas syringae subsp. savastanoi on olive plants is hrp-dependent. Phytopathology 94:484-489.
35. Sisto, A., M. Morea, F. Zaccaro, G. Palumbo, and N. S. Iacobellis. 1999. Isolation and characterization of Pseudomonas syringae subsp. savastanoi mutants defective in hypersensitive response elicitation and pathogenicity. J. Phytopathol. 147:321-330.
36. Stavrinides, J., and D. S. Guttman. 2004. Nucleotide sequence and evolution of the five-plasmid complement of the phytopathogen Pseudomonas syringae pv. maculicola ES4326. J. Bacteriol. 186:5101-5115.
37. Sundin, G. W. 2007. Genomic insights into the contribution of phytopathogenic bacterial plasmids to the evolutionary history of their hosts. Annu. Rev. Phytopathol. 45:129-151.
38. Sundin, G. W., and C. L. Bender. 1996. Molecular analysis of closely related copper and streptomycin resistance plasmids in Pseudomonas syringae pv. syringae. Plasmid 35:98-107.
39. Sundin, G. W., C. T. Mayfield, Y. Zhao, T. S. Gunasekera, G. L. Foster, and M. S. Ullrich. 2004. Complete nucleotide sequence and analysis of pPSR1 (72,601 bp), a pPT23A-family plasmid from Pseudomonas syringae pv. syringae A2. Mol. Gen. Genomics 270:462-475.
40. Sundin, G. W., and J. Murillo. 1999. Functional analysis of the Pseudomonas syringae rulAB determinant in tolerance to ultraviolet B (290-320 nm) radiation and distribution of rulAB among P. syringae pathovars. Environ. Microbiol. 1:75-87.
41. Surico, G., and N. S. Iacobellis. 1992. Phytohormone and olive knot disease, p. 209-229. In D. P. S. Verna (ed.), Molecular signals in plant-microbe communications. CRC Press, Boca Raton, FL.
42. Surico, G., N. S. Iacobellis, and A. Sisto. 1985. Studies on the role of indole-3-acetic acid and cytokinins in the formation of knots on olive and oleander plants by Pseudomonas syringae pv. savastanoi. Physiol. Plant Pathol. 26:309-320.
43. Vivian, A., and M. J. Gibbon. 1997. Avirulence genes in plant-pathogenic bacteria: signals or weapons? Microbiology 143:693-704.
44. Vivian, A., J. Murillo, and R. W. Jackson. 2001. The roles of plasmids in phytopathogenic bacteria: mobile arsenals? Microbiology 147:763-780.
45. Yamada, T., P. D. Lee, and T. Kosuge. 1986. Insertion sequence elements of Pseudomonas savastanoi: nucleotide sequence and homology with Agrobacterium tumefaciens transfer DNA. Proc. Natl. Acad. Sci. USA 83:8263-8267.
46. Zhao, Y. F., Z. H. Ma, and G. W. Sundin. 2005. Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae. J. Bacteriol. 187:2113-2126.
47. Zhou, C., Y. J. Yang, and A. Y. Jong. 1990. Mini-Prep in 10 minutes. BioTechniques 8:172-173.