Identification of mouse embryonic stem cell-associated proteins

Journal of Proteome Research

Volumn 7, Issue 1, 2008, Pages 412-423

  Baharvand, Hossein ^a   Fathi, Ali ^a   Gourabi, Hamid ^a   Mollamohammadi, Sepideh ^a   Salekdeh, Ghasem Hosseini ^b  

^a ROYAN INSTITUTE FOR REPRODUCTIVE BIOMEDICINE   (Iran)

^b AGRICULTURAL BIOTECHNOLOGY RESEARCH INSTITUTE OF IRAN ABRII   (Iran)

Author keywords

Differentiation; Embryonic stem cells; Mouse; Proteomics

Indexed keywords

BETA ACTIN; CELL PROTEIN; MESSENGER RNA; PROTEIN; PROTEIN HSPA8; PROTEIN HSPD1; PROTEIN ROTAN C1; PROTEIN ROTAN C4; PROTEIN ROYAN B1; PROTEIN ROYAN D3; PROTEIN TPT1; PROTEOME; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CONTROLLED STUDY; CORRELATION ANALYSIS; DOWN REGULATION; EMBRYO; EMBRYONIC STEM CELL; GENE EXPRESSION PROFILING; IMMUNOFLUORESCENCE; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN CONTENT; PROTEIN EXPRESSION; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TWO DIMENSIONAL ELECTROPHORESIS; WESTERN BLOTTING;

ANIMALS; CELL DIFFERENTIATION; DOWN-REGULATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; EMBRYONIC STEM CELLS; GENE EXPRESSION PROFILING; MASS SPECTROMETRY; MICE; PROTEINS; PROTEOME; PROTEOMICS; RNA, MESSENGER; UP-REGULATION;

EID: 38649139653     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr700560t     Document Type: Article

References (39)

1. Andrews, P. W.; Benvenisty, N.; McKay, R.; Pera, M. F.; Rossant, J.; Semb, H.; Stacey, G. N. The International Stem Cell Initiative: toward benchmarks for human embryonic stem cell research. Nat. Biotechnol. 2005, 23 (7), 795-779.
2. Baharvand, H.; Fathi, A.; Van Hoof, D.; Salekdeh, G. H. Trends in stem cells proteomics. Stem Cells 2007, 25 (8), 1888-1903.
3. Guo, X.; Ting, W.; Wan, J.; Hu, Z.; Qian, X.; Zhang, H.; He, F. Proteomic characterization of early-stage differentiation of mouse embryonic stem cells into neural cells induced by all-trans retinoic acid in vitro. Electrophoresis 2001, 22 (14), 3067-3075.
4. Wang, D.; Gao, L. Proteomic analysis of neural differentiation of mouse embryonic stem cells. Proteomics 2005, 5 (17), 4414-4426.
5. Kurisaki, A.; Hamazaki, T. S.; Okabayashi, K.; Iida, T.; Nishine, T.; Chonan, R.; Kido, H.; Tsunasawa, S.; Nishimura, O.; Asashima, M.; Sugino, H. Chromatin-related proteins in pluripotent mouse embryonic stem cells are downregulated after removal of leukemia inhibitory factor. Biochem. Biophys. Res. Commun. 2005, 335 (3), 667-675.
6. Van Hoof, D.; Passier, R.; Ward-Van Oostwaard, D.; Pinkse, M. W.; Heck, A. J.; Mummery, C. L.; Krijgsveld, J. A quest for human and mouse embryonic stem cell-specific proteins. Mol. Cell. Proteomics 2006, 5 (7), 1261-1273.
7. Baharvand, H.; Matthaei, K. I. Culture condition difference for establishment of new embryonic stem cell linesfrom the C57BL/6 and BALB/c mouse strains. In Vitro Cell. Dev. Biol.: Anim. 2004, 40 (3), 76-81.
8. Baharvand, H.; Taee, A.; Massumi, M.; Jafari, H.; Mollamohammadi, S.; Hatami, M.; Zarei Moradi, S. h. Effect of mouse strain on establishment of embryonic stem cell lines. Iran. J. Anat. Sci. 2004, 2, 21-31.
9. Blum, H.; Beier, H.; Gross, H. J. Improved silver staining of plant proteins, RNA and DNA in Polyacrylamide gels. Electrophoresis 1987, 8, 93-99.
10. Neuhoff, V.; Arold, N.; Taube, D.; Ehrhardt, W. Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 1988, 9 (6), 255-262.
11. Livak, K. J.; Schmittgen, T. D. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 2001, 25, 402-408.
12. Bommer, U. A.; Thiele, B. J. The translationally controlled tumour protein (TCTP). Int. J. Biochem. Cell Biol. 2004, 36 (3), 379-385.
13. Gachet, Y.; Tournier, S.; Millar, J. B.; Hyams, J. S. A MAP kinase-dependent Actin checkpoint ensures proper spindle orientation in fission yeast. Nature 2001, 412 (6844), 352-355.
14. Yan, L.; Fei, K.; Bridge, D.; Sarras, M. P., Jr. A cnidarian homologue of translationally controlled tumor protein (P23/TCTP). Dev. Genes Evol. 2000, 210 (10), 507-11.
15. Bommer, U. A.; Borovjagin, A. V.; Greagg, M. A.; Jeffrey, I. W.; Russell, P.; Laing, K. G.; Lee, M.; Clemens, M. J. The mRNA of the translationally controlled tumor protein P23/TCTP is a highly structured RNA, which activates the dsRNA-dependent protein kinase PKR. RNA 2002, 8 (4), 478-196.
16. Wang, S.; Raven, J. F.; Baltzis, D.; Kazemi, S.; Brunet, D. V.; Hatzoglou, M.; Tremblay, M. L.; Koromilas, A. E. The catalytic activity of the eukaryotic initiation factor-2alpha kinase PKR is required to negatively regulate Stat1 and Stat3 via activation of the T-cell protein-tyrosine phosphatase. J. Biol. Chem. 2006, 281 (14), 9439-9449.
17. Son, Y. S.; Park, J. H.; Kang, Y. K.; Park, J. S.; Choi, H. S.; Lim, J. Y.; Lee, J. E.; Lee, J. B.; Ko, M. S.; Kim, Y. S.; Ko, J. H.; Yoon, H. S.; Lee, K. W.; Seong, R. H.; Moon, S. Y.; Ryu, C. J.; Hong, H. J. Heat shock 70-kDa protein 8 isoform 1 is expressed on the surface of human embryonic stem cells and downregulated upon differentiation. Stem Cells 2005, 23 (10), 1502-1513.
18. Shin, B. K.; Wang, H.; Yim, A. M.; Le Naour, F.; Brichory, F.; Jang, J. H.; Zhao, R.; Puravs, E.; Tra, J.; Michael, C. W.; Misek, D. E.; Hanash, S. M. Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. J. Biol. Chem. 2003, 278 (9), 7607-7616.
19. Sapozhnikov, A. M.; Gusarova, G. A.; Ponomarev, E. D.; Telford, W. G. Translocation of cytoplasmic HSP70 onto the surface of EL-4 cells during apoptosis. Cell Proliferation 2002, 35 (4), 193-206.
20. Poccia, F.; Piselli, P.; Vendetti, S.; Bach, S.; Amendola, A.; Placido, R.; Colizzi, V. Heat-shock protein expression on the membrane of T cells undergoing apoptosis. Immunology 1996, 88 (1), 6-12.
21. Soltys, B. J.; Gupta, R. S. Cell surface localization of the 60 kDa heat shock chaperonin protein (hsp60) in mammalian cells. Cell Biol. Int. 1997, 21 (5), 315-320.
22. Soltys, B. J.; Gupta, R. S. Mitochondrial-matrix proteins at unexpected locations: are they exported. Trends Biochem. Sci. 1999, 24 (5), 174-177.
23. Nunomura, K.; Nagano, K.; Itagaki, C.; Taoka, M.; Okamura, N.; Yamauchi, Y.; Sugano, S.; Takahashi, N.; Izumi, T.; Isobe, T. Cell surface labeling and mass spectrometry reveal diversity of cell surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells. Mol. Cell. Proteomics 2005, 4 (12), 1968-1976.
24. Nicolet, C. M.; Craig, E. A. Isolation and characterization of STI1, a stress-inducible gene from Saccharomyces cerevisiae. Mol. Cell. Biol. 1989, 9 (9), 3638-3646.
25. Blatch, G. L.; Lassie, M.; Zetter, B. R.; Kundra, V. Isolation of a mouse cDNA encoding mSTI1, a stress-inducible protein containing the TPR motif. Gene 1997, 194 (2), 277-282.
26. Smith, D. F.; Sullivan, W. P.; Marion, T. N.; Zaitsu, K.; Madden, B.; McCormick, D. J.; Toft, D. O. Identification of a 60-kilodalton stress-related protein, p60, which interacts with hsp90 and hsp70. Mol. Cell. Biol. 1993, 13 (2), 869-876.
27. Honore, B.; Leffers, H.; Madsen, P.; Rasmussen, H. H.; Vandekerckhove, J.; Celis, J. E. Molecular cloning and expression of a transformation-sensitive human protein containing the TPR motif and sharing identity to the stress-inducible yeast protein STI1. J. Biol. Chem. 1992, 267 (12), 8485-8491.
28. Doye, V.; Kellermann, O.; Buc-Caron, M. H.; Sobel, A. High expression of stathmin in multipotential teratocarcinoma and normal embryonic cells versus their early differentiated derivatives. Differentiation 1992, 50 (2), 89-96.
29. Rowlands, D. C.; Harrison, R. F.; Jones, N. A.; Williams, A.; Hubscher, S. G.; Brown, G. Stathmin is expressed by the proliferating hepatocytes during liver regeneration. Clin. Mol. Pathol. 1995, 48 (2), M88-M92.
30. Ye, N. S.; Chen, J.; Luo, G. A.; Zhang, R. L.; Zhao, Y. F.; Wang, Y. M. Proteomic profiling of rat bone marrow mesenchymal stem cells induced by 5-azacytidine. Stem Cells Dev. 2006, 15 (5), 665-676.
31. Holmfeldt, P.; Larsson, N.; Segerman, B.; Howell, B.; Morabito, J.; Cassimeris, L.; Gullberg, M. The catastrophe-promoting activity of ectopic Op18/stathmin is required for disruption of mitotic spindles but not interphase microtubules. Mol. Biol. Cell 2001, 12 (1), 73-83.
32. Iancu, C.; Mistry, S. J.; Arkin, S.; Wallenstein, S.; Atweh, G. F. Effects of stathmin inhibition on the mitotic spindle. J. Cell. Sci. 2001, 114 (Pt 5), 909-916.
33. Kitagawa, K.; Skowyra, D.; Elledge, S. J.; Harper, J. W.; Hieter, P. SGT1 encodes an essential component of the yeast kinetochore assembly pathway and a novel subunit of the SCF ubiquitin ligase complex. Mol. Cell 1999, 4 (1), 21-33.
34. Squatrito, M.; Mancino, M.; Sala, L.; Draetta, G. F. Ebp1 is a dsRNA-binding protein associated with ribosomes that modulates eIF2alpha phosphorylation. Biochem. Biophys. Res. Commun. 2006, 344 (3), 859-868.
35. Kang, Y. J.; Olson, M. O.; Busch, H. Phosphorylation of acid-soluble proteins in isolated nucleoli of Novikoff hepatoma ascites cells. Effects of divalent cations. J. Biol. Chem. 1974, 249 (17), 5580-5585.
36. Chan, W. Y.; Liu, Q. R.; Borjigin, J.; Busch, H.; Rennen, O. M.; Tease, L. A.; Chan, P. K. Characterization of the cDNA encoding human nucleophosmin and studies of its role in normal and abnormal growth. Biochemistry 1989, 28 (3), 1033-1039.
37. Baharvand, H.; Hajheidari, M; Kazemi Ashtiani, S; Salekdeh, G. H. Proteomic signature of human embryonic stem cells. Proteomics 2006, 6 (12), 3544-3549.
38. Wang, B. B.; Lu, R.; Wang, W. C.; Jin, Y. Inducible and reversible suppression of Npm1 gene expression using stably integrated small interfering RNA vector in mouse embryonic stem cells. Biochem. Biophys. Res. Commun. 2006, 347 (4), 1129-1137.
39. Hoffrogge, R.; Mikkat, S.; Scharf, C.; Beyer, S.; Christoph, H.; Pahnke, J.; Mix, E.; Berth, M.; Uhrmacher, A.; Zubrzycki, I. Z.; Miljan, E.; Volker, U.; Rolfs, A. 2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReNcell VM). Proteomics 2006, 6 (6), 1833-1847.