Towards construction of an ideal stereotactic brain atlas

Acta Neurochirurgica

Volumn 150, Issue 1, 2008, Pages 1-13

  Nowinski, Wieslaw L ^a  

^a AGENCY FOR SCIENCE   (Singapore)

Author keywords

Brain atlas; Probabilistic functional atlas; Registration; Schaltenbrand Wahren atlas; Stereotaxy; Talairach Tournoux atlas

Indexed keywords

ARTICLE; HUMAN; MEDICAL INFORMATION; MEDICAL LITERATURE; NEUROSURGERY; PRIORITY JOURNAL; STEREOTACTIC PROCEDURE; THALAMUS;

ADULT; ANATOMY, ARTISTIC; ATLASES AS TOPIC; BRAIN; BRAIN DISEASES; BRAIN MAPPING; DATABASES, FACTUAL; ETHNIC GROUPS; HUMANS; IMAGING, THREE-DIMENSIONAL; MEDICAL ILLUSTRATION; MODELS, ANATOMIC; MULTIMEDIA; STEREOTAXIC TECHNIQUES;

EID: 38649138809     PISSN: 00016268     EISSN: 09420940     Source Type: Journal    
DOI: 10.1007/s00701-007-1270-6     Document Type: Article

References (79)

1. A Abbott 2003 A new atlas of the brain Nature 424 249 250
2. J Andrew ES Watkins 1969 A Stereotaxic Atlas of the Human Thalamus and Adjacent Structures A Variability Study Williams and Wilkins Baltimore
3. Bardinet E, Dormont D, Malandain G, Bhattacharjee M, Pidoux B, Saleh C, Cornu P, Ayache N, Agid Y, Yelnik J (2005) Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation. Proc. Medical Image Computing and Computer-Assisted Intervention - MICCAI, Lecture Notes in Computer Science 3750, vol. 8(2). Springer, Berlin Heidelberg New York, pp 385-393
4. AL Benabid A Koudsie A Benazzouz V Fraix A Ashraf JF Le Bas S Chabardes P Pollak 2000 Subthalamic stimulation for Parkinson's disease Arch Med Res 31 282 289
5. CR Butson SE Cooper JM Henderson CC McIntyre 2007 Patient-specific analysis of the volume of tissue activated during deep brain stimulation Neuroimage 34 2 661 670
6. MM Chakravarty G Bertrand CP Hodge AF Sadikot DL Collins 2006 The creation of a brain atlas for image guided neurosurgery using serial histological data Neuroimage 30 2 359 376
7. Chakravarty MM, Sadikot AF, Mongia S, Collin DL (2006) Towards a multi-modal atlas for neurosurgical planning. Proc. Medical Image Computing and Computer-Assisted Intervention - MICCAI, Lecture Notes in Computer Science 4191. Springer, Berlin Heidelberg New York, pp 389-296
8. MM Chiavaras G LeGoualher A Evans M Petrides 2001 Three-dimensional probabilistic atlas of the human orbitofrontal sulci in standardized stereotaxic space Neuroimage 13 3 479 496
9. GE Christensen SC Joshi MI Miller 1997 Volumetric transformation of brain anatomy IEEE Trans Med Imaging 16 6 864 877
10. RJ Coffey 1998 Stereotactic atlases in printed formats PL Gildenberg RR Tasker Textbook of Stereotactic and Functional Neurosurgery McGraw-Hill New York 237 248
11. DL Collins AC Evans 1997 ANIMAL: validation and application of non-linear registration-based segmentation Int J Pattern Recogn Artif Intell 11 8 1271 1294
12. D'Haese P, Cetinkaya E, Kao C, Fitzpatrick J, Konrad P, Dawant B (2004) Toward the creation of an electrophysiological atlas for the pre-operative planning and intra-operative guidance of deep brain stimulators (DBS) implantation. Proc. Medical Image Computing and Computer-Assisted Intervention MICCAI. Lecture Notes in Computer Science 3216. Springer, Berlin Heidelberg New York, pp 729-736
13. A Dimitrova D Zeljko F Schwarze M Maschke M Gerwig M Frings A Beck V Aurich M Forsting D Timmann 2006 Probabilistic 3D MRI atlas of the human cerebellar dentate/interposed nuclei Neuroimage 30 1 12 25
14. Evans AC, Collins DL, Milner B (1992) An MRI-based stereotactic brain atlas from 300 young normal subjects. Proc. 22nd Symposium of the Society for Neuroscience. Anaheim, Berlin Heidelberg New York, p 408
15. K Finnis Y Starreveld A Parrent A Sadikot T Peters 2003 Three-dimensional database of subcortical electrophysiology for image-guided stereotactic functional neurosurgery IEEE Trans Med Imaging 22 1 93 104
16. PT Fox S Mikiten G Davis JL Lancaster 1994 BrainMap: a database of human functional brain mapping RW Thatcher Functional neuroimaging Technical Foundations Berlin Heidelberg New York 95 106
17. M Fukuda M Mentis MF Ghilardi V Dhawan A Antonini J Hammerstad AM Lozano A Lang K Lyons W Koller C Ghez D Eidelberg 2001 Functional correlates of pallidal stimulation for Parkinson's disease Ann Neurol 49 2 155 164
18. IM Germano DJ Weisz 2004 Computer technology as an adjuvant for target location and validation Z Israel KJ Burchiel Microelectrode recording in movement disorder surgery Thieme New York - Stuttgart 152 163
19. D Grachev D Berdichevsky SL Rauch S Heckers DN Kennedy VS Caviness NM Alpert 1999 A method for assessing the accuracy of intersubject registration of the human brain using anatomic landmarks Neuroimage 9 2 250 268
20. A Hammers R Allom MJ Koepp SL Free R Myers L Lemieux TN Mitchell DJ Brooks JS Duncan 2003 Three-dimensional maximum probability atlas of the human brain, with particular reference to the temporal lobe Hum Brain Mapp 19 4 224 247
21. A Hammers CH Chen L Lemieux R Allom S Vossos SL Free R Myers DJ Brooks JS Duncan MJ Koepp 2007 Statistical neuroanatomy of the human inferior frontal gyrus and probabilistic atlas in a standard stereotaxic space Hum Brain Mapp 28 1 34 48
22. TL Hardy LR Deming R Harris-Collazo 1999 Computerized stereotactic atlases E Alexander III RJ Maciunas Advanced neurosurgical navigation Thieme New York 115 124
23. R Hassler 1959 Anatomy of the thalamus G Schaltenbrand W Bailey Introduction to stereotaxis with an atlas of the human brain Georg Thieme Verlag Stuttgart 230 290
24. JM Henderson 2004 Integration of stereotactic position with MER Z Israel KJ Burchiel Microelectrode recording in movement disorder surgery Thieme New York, Stuttgart 130 137
25. KH Hoehne 1997 VOXEL-MAN 3-D Navigator: Brain and Skull 2 Springer Heidelberg
26. R Kikinis ME Shenton DV Iosifescu RW McCarley P Saiviroonporn HH Hokama A Robatino D Metcalf CG Wible CM Portas R Donnino F Jolesz 1996 A digital brain atlas for surgical planning, model-driven segmentation, and teaching IEEE Trans Vis Comput Graph 2 3 232 241
27. J Liu WL Nowinski 2006 A hybrid approach to shape-based interpolation of stereotactic atlases of the human brain Neuroinformatics 4 2 177 198
28. HS Mayberg AM Lozano V Voon HE McNeely D Seminowicz C Hamani JM Schwalb SH Kennedy 2005 Deep brain stimulation for treatment-resistant depression Neuron 45 5 651 660 3
29. J Mazziotta 2002 The International Consortium for Brain Mapping: a probabilistic atlas and reference system for the human brain AW Toga JC Mazziotta Brain mapping. The methods 2 Academic Press Amsterdam 727 755
30. P Mazzone A Lozano P Stanzione S Galati E Scarnati A Peppe A Stefani 2005 Implantation of human pedunculopontine nucleus: a safe and clinically relevant target in Parkinson's disease Neuroreport 16 17 1877 1881
31. CC McIntyre S Mori DL Sherman NV Thakor JL Vitek 2004 Electric field and stimulating influence generated by deep brain stimulation of the subthalamic nucleus Clin Neurophysiol 115 3 589 595
32. NM Menezes H Ay M Wang Zhu CJ Lopez AB Singhal JO Karonen HJ Aronen Y Liu J Nuutinen WJ Koroshetz AG Sorensen 2007 The real estate factor: quantifying the impact of infarct location on stroke severity Stroke 38 194 197
33. K Niemann C Naujokat G Pohl C Wollner D von Keyserlingk 1994 Verification of the Schaltenbrand and Wahren stereotactic atlas Acta Neurochir 129 1-2 72 81
34. K Niemann I van Nieuwenhofen 1999 One atlas - three anatomies: relationships of the Schaltenbrand and Wahren microscopic data Acta Neurochir 141 1025 1103
35. WL Nowinski D Belov A Thirunavuukarasuu AL Benabid 2006 A probabilistic functional atlas of the VIM nucleus constructed from pre-, intra- and post-operative electrophysiological and neuroimaging data acquired during the surgical treatment of Parkinson's disease patients Stereotact Funct Neurosurg 83 5-6 190 196
36. WL Nowinski D Belov AL Benabid 2002 A community-centric Internet portal for stereotactic and functional neurosurgery with a probabilistic functional atlas Stereotact Funct Neurosurg 79 1 12
37. WL Nowinski D Belov AL Benabid 2003 An algorithm for rapid calculation of a probabilistic functional atlas of subcortical structures from electrophysiological data collected during functional neurosurgery procedures Neuroimage 18 1 143 155
38. WL Nowinski D Belov P Pollack AL Benabid 2005 Statistical analysis of 168 bilateral subthalamic nucleus implantations by means of the probabilistic functional atlas Neurosurgery 57 Suppl 4 319 330
39. WL Nowinski D Belov P Pollak AL Benabid 2004 A probabilistic functional atlas of the human subthalamic nucleus Neuroinformatics 2 4 381 398
40. Nowinski WL, Benabid AL, Belov D, Thirunavuukarasuu A (2001) A probabilistic functional atlas of the human brain calculated from microrecordings: concept and potential. Proc. 13th Meeting of the World Society for Stereotactic and Functional Neurosurgery, September 11-14, 2001. Adelaide, Australia, vol. 2, p 34
41. Nowinski WL, Benabid AL, Belov D (2001) A user-centric Internet portal for stereotactic and functional neurosurgery. Proc. 13th Meeting of the World Society for Stereotactic and Functional Neurosurgery, September 11-14, 2001. Adelaide, Australia, vol. 2, p 35
42. WL Nowinski AL Benabid 2002 New directions in atlas-assisted stereotactic functional neurosurgery IM Germano Advanced techniques in image-guided brain and spine surgery Thieme New York 162 174
43. WL Nowinski KN Bhanuprakash 2005 Dorso-ventral extension of the Talairach transformation and its automatic calculation for MR Neuroimages J Comp Assisted Tomogr 29 6 863 879
44. WL Nowinski RN Bryan R Raghavan 1997 The Electronic Clinical Brain Atlas Multiplanar Navigation of the Human Brain Thieme New York
45. WL Nowinski A Fang BT Nguyen JK Raphel L Jagannathan R Raghavan RN Bryan G Miller 1997 Multiple brain atlas database and atlas-based neuroimaging system Comput Aided Surg 2 1 42 66
46. Nowinski WL, Liu J, Thirunavuukarasuu A (in press) A: quantification and visualization of three-dimensional inconsistency of the ventrointermediate nucleus of the thalamus in the Schaltenbrand-Wahren brain atlas. Acta Neurochir (in press)
47. WL Nowinski J Liu A Thirunavuukarasuu 2006 Quantification and visualization of three-dimensional inconsistency of the globus pallidus internus in the Schaltenbrand-Wahren brain atlas Stereotact Funct Neurosurg 84 236 242
48. WL Nowinski J Liu A Thirunavuukarasuu 2006 Quantification of three-dimensional inconsistency of the subthalamic nucleus in the Schaltenbrand-Wahren brain atlas Stereotact Funct Neurosurg 84 1 46 55
49. WL Nowinski G Qian KN Bhanu Prakash Q Hu A Aziz 2006 Fast Talairach Transformation for magnetic resonance neuroimages J Comput Assist Tomogr 30 4 629 641
50. WL Nowinski A Thirunavuukarasuu AL Benabid 2005 The Cerefy Clinical Brain Atlas: Enhanced Edition with Surgical Planning and Intraoperative Support Thieme New York
51. WL Nowinski A Thirunavuukarasuu 2001 Atlas-assisted localization analysis of functional images Med Image Anal 5 3 207 220
52. WL Nowinski GL Yang TT Yeo 2000 Computer-aided stereotactic functional neurosurgery enhanced by the use of the multiple brain atlas database IEEE Trans Med Imaging 19 1 62 69
53. WL Nowinski TT Yeo A Thirunavuukarasuu 1998 Microelectrode-guided functional neurosurgery assisted by Electronic Clinical Brain Atlas CD-ROM Comput Aided Surg 3 3 115 122
54. WL Nowinski 1998 Anatomical targeting in functional neurosurgery by the simultaneous use of multiple Schaltenbrand-Wahren brain atlas microseries Stereotact Funct Neurosurg 71 103 116
55. WL Nowinski 2001 Computerized brain atlases for surgery of movement disorders Semin Neurosurg 12 2 183 194
56. WL Nowinski 2004 Co-registration of the Schaltenbrand-Wahren microseries with the probabilistic functional atlas Stereotact Funct Neurosurg 82 142 146
57. WL Nowinski 2002 Electronic brain atlases: features and applications D Caramella C Bartolozzi 3D Image Processing: Techniques and Clinical Applications. Medical radiology series Springer Berlin Heidelberg New York 79 93
58. WL Nowinski 2007 Human brain atlases in education, research and clinical applications JL Wu K Ito S Tobimatsu T Nishida H Fukuyama Complex Medical Engineering Springer Tokyo 335 349
59. WL Nowinski 2005 The Cerefy brain atlases: continuous enhancement of the electronic Talairach-Tournoux brain atlas Neuroinformatics 3 4 293 300
60. JS Park MS Chung SB Hwang YS Lee DH Har HS Park 2005 Visible Korean human: improved serially sectioned images of the entire body IEEE Trans Med Imaging 24 3 352 360
61. P Ratiu B Hillen J Glaser DP Jenkins 2003 Visible Human 2.0 - the next generation Stud Health Technol Inform 94 275 281
62. GK Rohde A Aldroubi BM Dawant 2003 The adaptive bases algorithm for intensity based nonrigid image registration IEEE Trans Med Imaging 22 11 1470 1479
63. JA Saint-Cyr T Hoque LC Pereira JO Dostrovsky WD Hutchison DJ Mikulis A Abosch E Sime AE Lang AM Lozano 2002 Localization of clinically effective stimulating electrodes in the human subthalamic nucleus on magnetic resonance imaging J Neurosurg 97 5 1152 1166
64. G Schaltenbrand W Bailey 1959 Introduction to Stereotaxis with An Atlas of the Human Brain Thieme Stuttgart
65. G Schaltenbrand W Wahren 1977 Atlas for Stereotaxy of the Human Brain Thieme Stuttgart
66. L Serra WL Nowinski T Poston H Ng CM Lee GG Chua PK Pillay 1997 The brain bench: virtual tools for stereotactic frame neurosurgery Med Image Anal 1 4 317 329
67. KV Slavin KR Thulborn C Wess H Nersesyan 2006 Direct visualization of the human subthalamic nucleus with 3T MR imaging Am J Neuroradiol 27 1 80 84
68. V Spitzer MJ Ackerman AL Scherzinger D Whitlock 1996 The Visible Human male: a technical report J Am Med Inform Assoc 3 2 118 130
69. J Talairach P Tournoux 1988 Co-Planar Stereotactic Atlas of the Human Brain Georg Thieme Verlag/Thieme Medical Publishers Stuttgart, New York
70. PM Thompson KM Hayashi ER Sowell N Gogtay JN Giedd JL Rapoport GI de Zubicaray AL Janke SE Rose J Semple DM Doddrell Y Wang TG van Erp TD Cannon AW Toga 2004 Mapping cortical change in Alzheimer's disease, brain development, and schizophrenia Neuroimage 23 Suppl 1 S2 S18
71. AW Toga PM Thompson 2005 Brain atlases of normal and diseased populations MF Glabus Neuroimaging Part A Elsevier Amsterdam 1 54
72. DS Tuch VJ Wedeen AM Dale JS George JW Belliveau 2001 Conductivity tensor mapping of the human brain using diffusion tensor MRI Proc National Academy Science USA 98 20 11697 11701
73. DC Van Essen 2005 A population-average, landmark- and surface-based (PALS) atlas of human cerebral cortex Neuroimage 28 3 635 662 15
74. W Wahren V Braitenberg 1959 The brain as a whole G Schaltenbrand W Bailey Introduction to Stereotaxis with an atlas of the human brain Thieme Stuttgart 42 64
75. AE Walker 1938 The Primate Thalamus University of Chicago Press Chicago
76. SK Warfield A Guimond A Roche 2002 Advanced nonrigid registration algorithms for image fusion AW Toga JC Mazziotta Brain Mapping. The Methods 2 Academic Press San Diego 661 690
77. J Yelnik P Damier S Demeret D Gervais E Bardinet BP Bejjani C Francois JL Houeto I Arnule D Dormont D Galanaud B Pidoux P Cornu Y Agid 2003 Localization of stimulating electrodes in patients with Parkinson disease by using a three-dimensional atlas-magnetic resonance imaging co-registration method J Neurosurg 99 1 89 99
78. M Yoshida 1992 Three-dimensional maps by interpolation from the Schaltenbrand and Bailey atlas PJ Kelly BA Kall Computers in stereotactic neurosurgery Blackwell Boston 143 152
79. S-X Zhang PA Heng Z-J Liu 2004 Atlas of Chinese Visible Human (Male and Female) Science Press Beijing