-
1
-
-
0037444724
-
Stochastic chemical kinetics and the quasi-steady-state assumption: application to the Gillespie algorithm
-
Arkin A.P., and Rao C.V. Stochastic chemical kinetics and the quasi-steady-state assumption: application to the Gillespie algorithm. Journal of Chemical Physics 11 (2003) 4999-5010
-
(2003)
Journal of Chemical Physics
, vol.11
, pp. 4999-5010
-
-
Arkin, A.P.1
Rao, C.V.2
-
2
-
-
10644250404
-
Evolving a Lingua Franca and Associated Software Infrastructure for Computational Systems Biology: The Systems Biology Markup Language (SBML) Project
-
Bornstein B.J., Doyle J.C., Finney A., Funahashi A., Hucka M., Keating S.M., Kitano H., Kovitz B.L., Matthews J., Shapiro B.E., and Schilstra M.J. Evolving a Lingua Franca and Associated Software Infrastructure for Computational Systems Biology: The Systems Biology Markup Language (SBML) Project. Systems Biology 1 (2004) 41-53
-
(2004)
Systems Biology
, vol.1
, pp. 41-53
-
-
Bornstein, B.J.1
Doyle, J.C.2
Finney, A.3
Funahashi, A.4
Hucka, M.5
Keating, S.M.6
Kitano, H.7
Kovitz, B.L.8
Matthews, J.9
Shapiro, B.E.10
Schilstra, M.J.11
-
3
-
-
43049179364
-
-
Bortolussi, L. and A. Policriti, Modeling Biological Systems in Stochastic Concurrent Constraint Programming, Proc. of WCB 2006, 2006
-
-
-
-
4
-
-
0037339442
-
Fluctuations and Slow Variables in Genetic Networks
-
Bundschuh R., Hayot F., and Jayaprakash C. Fluctuations and Slow Variables in Genetic Networks. Biophys. J. 84 (2003) 1606-1615
-
(2003)
Biophys. J.
, vol.84
, pp. 1606-1615
-
-
Bundschuh, R.1
Hayot, F.2
Jayaprakash, C.3
-
5
-
-
38649097955
-
-
Calder, M., S. Gilmore and J. Hillston, Automatically deriving ODEs from process algebra models of signalling pathways, Proc. of CMSB'05, 2005
-
-
-
-
6
-
-
38549120134
-
Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
-
Springer
-
Calder M., Gilmore S., and Hillston J. Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA. T. Comp. Sys. Biology, VII 4230 (2006), Springer 1-23
-
(2006)
T. Comp. Sys. Biology, VII
, vol.4230
, pp. 1-23
-
-
Calder, M.1
Gilmore, S.2
Hillston, J.3
-
7
-
-
38649139210
-
-
Calder, M., A. Duguid, S. Gilmore and J. Hillston, Stronger computational modelling of signalling pathways using both continuous and discrete-space methods, Proc. of CMSB06, 2006
-
-
-
-
8
-
-
33846185710
-
Accelerated Stochastic Simulation of the Stiff Enzyme-Substrate Reaction
-
Cao Y., Gillespie D.T., and Petzold L. Accelerated Stochastic Simulation of the Stiff Enzyme-Substrate Reaction. J. Chem. Phys. 123 (2005) 144917-144929
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 144917-144929
-
-
Cao, Y.1
Gillespie, D.T.2
Petzold, L.3
-
9
-
-
4444383325
-
BioAmbients: An Abstraction for Biological Compartments
-
Elsevier
-
Cardelli L., Panina E.M., Regev A., Shapiro E., and Silverman W. BioAmbients: An Abstraction for Biological Compartments. Theoretical Computer Science 325 1 (2004) 141-167 Elsevier
-
(2004)
Theoretical Computer Science
, vol.325
, Issue.1
, pp. 141-167
-
-
Cardelli, L.1
Panina, E.M.2
Regev, A.3
Shapiro, E.4
Silverman, W.5
-
11
-
-
34250812291
-
Language modeling and simulation of autoreactive lymphocytes recruitment in inflamed brain vessels
-
Costantin G., Laudanna C., Lecca P., Priami C., Quaglia P., and Rossi B. Language modeling and simulation of autoreactive lymphocytes recruitment in inflamed brain vessels. SIMULATION: Transactions of The Society for Modeling and Simulation International 80 (2003) 273-288
-
(2003)
SIMULATION: Transactions of The Society for Modeling and Simulation International
, vol.80
, pp. 273-288
-
-
Costantin, G.1
Laudanna, C.2
Lecca, P.3
Priami, C.4
Quaglia, P.5
Rossi, B.6
-
12
-
-
38649086833
-
-
Danos, V. and J. Krivine, Formal molecular biology done in CCS-R, Proc. of Workshop on Concurrent Models in Molecular Biology (BioConcur'03), 2003
-
-
-
-
13
-
-
0036212767
-
Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
-
Eichler-Jonsson C., Gilles E.D., Muller G., and Schoeberl B. Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature Biotechnology 20 (2002) 370-375
-
(2002)
Nature Biotechnology
, vol.20
, pp. 370-375
-
-
Eichler-Jonsson, C.1
Gilles, E.D.2
Muller, G.3
Schoeberl, B.4
-
14
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81 (1977) 2340-2361
-
(1977)
Journal of Physical Chemistry
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
16
-
-
1542345686
-
Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks
-
Kierzek A.M., and Puchalka J. Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks. Biophys. J. 86 (2004) 1357-1372
-
(2004)
Biophys. J.
, vol.86
, pp. 1357-1372
-
-
Kierzek, A.M.1
Puchalka, J.2
-
17
-
-
38149103597
-
Gene regulation in the π-calculus: simulating cooperativity at the lambda switch
-
Kuttler C., and Niehren J. Gene regulation in the π-calculus: simulating cooperativity at the lambda switch. Transactions on Computational Systems Biology VII 4230 (2006) 24-55
-
(2006)
Transactions on Computational Systems Biology VII
, vol.4230
, pp. 24-55
-
-
Kuttler, C.1
Niehren, J.2
-
18
-
-
38649091152
-
-
Priami, C. and P. Quaglia, Beta-binders for biological interactions, Proc. of CMSB'04, 2004
-
-
-
-
19
-
-
0035888407
-
Application of a stochastic name-passing calculus to representation and simulation of molecular processes
-
Priami C., Regev A., Silverman W., and Shapiro E. Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Information Processing Letters 80 (2001) 25-31
-
(2001)
Information Processing Letters
, vol.80
, pp. 25-31
-
-
Priami, C.1
Regev, A.2
Silverman, W.3
Shapiro, E.4
|