-
1
-
-
84875100163
-
-
J. Barjis, I. Barjis, Formalization of the protein production by means of petri nets, in: International Conference on Information Intelligence and Systems, ICIIS'99, 1999
-
-
-
-
2
-
-
38649100075
-
-
M. Calder, V. Vyshemirsky, D. Gilbert, R. Orton, Analysis of signaling pathways using the prism model checker, in: Proc. Computational Methods in Systems Biology, CMSB'05, 2005, pp. 179-190
-
-
-
-
3
-
-
33747877324
-
Biocham: An environment for modeling biological systems and formalizing experimental knowledge
-
Calzone L., Fages F., and Soliman S. Biocham: An environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22 14 (2006) 1805-1807
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 1805-1807
-
-
Calzone, L.1
Fages, F.2
Soliman, S.3
-
4
-
-
0242574975
-
Toward rigorous comprehension of biological complexity: Modeling, execution, and visualization of thymic t-cell maturation
-
Efroni S., Harel D., and Cohen I.R. Toward rigorous comprehension of biological complexity: Modeling, execution, and visualization of thymic t-cell maturation. Genom. Res. 13 11 (2003) 2485-2497
-
(2003)
Genom. Res.
, vol.13
, Issue.11
, pp. 2485-2497
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
5
-
-
13844266999
-
A formal language for computational systems biology
-
Errampalli D.D., Priami C., and Quaglia P. A formal language for computational systems biology. Omics 8 4 (2004) 370-380
-
(2004)
Omics
, vol.8
, Issue.4
, pp. 370-380
-
-
Errampalli, D.D.1
Priami, C.2
Quaglia, P.3
-
6
-
-
13844309568
-
Computational insights into caenorhabditis elegans vulval development
-
Fisher J., Piterman N., Hubbard E.J., Stern M.J., and Harel D. Computational insights into caenorhabditis elegans vulval development. Proc. Natl. Acad. Sci. USA 102 6 (2005) 1951-1956
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, Issue.6
, pp. 1951-1956
-
-
Fisher, J.1
Piterman, N.2
Hubbard, E.J.3
Stern, M.J.4
Harel, D.5
-
8
-
-
0035790856
-
-
N. Kam, I.R. Cohen, D. Harel, The immune system as a reactive system: Modeling t cell activation with statecharts, in: Proc. Visual Languages and Formal Methods, VLFM'01, part of IEEE Symp. on Human-Centric Computing, HCC'01, 2001, pp. 15-22
-
-
-
-
9
-
-
84883592668
-
-
N. Kam, D. Harel, H. Kugler, R. Marelly, A. Pnueli, E.J. Hubbard, M.J. Stern, Formal modeling of c. Elegans development: A scenario-based approach, in: Computational Methods in Systems Biology: First International Workshop, 2602 / 2003, 2003, pp. 4-20
-
-
-
-
10
-
-
0035235039
-
Representation and simulation of biochemical processes using the pi-calculus process algebra
-
Regev A., Silverman W., and Shapiro E. Representation and simulation of biochemical processes using the pi-calculus process algebra. Pac. Symp. Biocomput. (2001) 459-470
-
(2001)
Pac. Symp. Biocomput.
, pp. 459-470
-
-
Regev, A.1
Silverman, W.2
Shapiro, E.3
-
11
-
-
38649131521
-
-
A. Sadot, J. Fisher, D. Barak, Y. Admanit, M.J. Stern, E.J. Hubbard, D. Harel, Towards verified biological models, IEEE/ACM Trans. Comput. Biology and Bioinformatics (in press)
-
-
-
-
12
-
-
0036333324
-
Modeling and computational analysis of egf receptor-mediated cell communication in drosophila oogenesis
-
Shvartsman S.Y., Muratov C.B., and Lauffenburger D.A. Modeling and computational analysis of egf receptor-mediated cell communication in drosophila oogenesis. Development 129 11 (2002) 2577-2589
-
(2002)
Development
, vol.129
, Issue.11
, pp. 2577-2589
-
-
Shvartsman, S.Y.1
Muratov, C.B.2
Lauffenburger, D.A.3
-
13
-
-
38649132359
-
-
C. Talcott, D.L. Dill, The pathway logic assistant, in: Proc. Computational Methods in Systems Biology, CMSB'05, 2005, pp. 228-239
-
-
-
-
14
-
-
33846542982
-
Emergent dynamics of thymocyte development and lineage determination
-
Efroni S., Harel D., and Cohen I.R. Emergent dynamics of thymocyte development and lineage determination. PLoS Comput. Biol. 3 1 (2007) e13
-
(2007)
PLoS Comput. Biol.
, vol.3
, Issue.1
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
15
-
-
33746595848
-
Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method
-
Meier-Schellersheim M., Xu X., Angermann B., Kunkel E.J., Jin T., and Germain R.N. Key role of local regulation in chemosensing revealed by a new molecular interaction-based modeling method. PLoS Comput. Biol. 2 7 (2006) e82
-
(2006)
PLoS Comput. Biol.
, vol.2
, Issue.7
-
-
Meier-Schellersheim, M.1
Xu, X.2
Angermann, B.3
Kunkel, E.J.4
Jin, T.5
Germain, R.N.6
-
16
-
-
0142219725
-
Quantitative cell biology with the virtual cell
-
Slepchenko B.M., Schaff J.C., Macara I., and Loew L.M. Quantitative cell biology with the virtual cell. Trends Cell. Biol. 13 11 (2003) 570-576
-
(2003)
Trends Cell. Biol.
, vol.13
, Issue.11
, pp. 570-576
-
-
Slepchenko, B.M.1
Schaff, J.C.2
Macara, I.3
Loew, L.M.4
-
17
-
-
33744792286
-
Analysis of a generic model of eukaryotic cell-cycle regulation
-
Csikasz-Nagy A., Battogtokh D., Chen K.C., Novak B., and Tyson J.J. Analysis of a generic model of eukaryotic cell-cycle regulation. Biophys. J. 90 12 (2006) 4361-4379
-
(2006)
Biophys. J.
, vol.90
, Issue.12
, pp. 4361-4379
-
-
Csikasz-Nagy, A.1
Battogtokh, D.2
Chen, K.C.3
Novak, B.4
Tyson, J.J.5
-
18
-
-
0033998889
-
Generic modeling of chemotactic based self-wiring of neural networks
-
Segev R., and Ben-Jacob E. Generic modeling of chemotactic based self-wiring of neural networks. Neural Netw. 13 2 (2000) 185-199
-
(2000)
Neural Netw.
, vol.13
, Issue.2
, pp. 185-199
-
-
Segev, R.1
Ben-Jacob, E.2
-
19
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431 7011 (2004) 931-945
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 931-945
-
-
International Human Genome Sequencing Consortium1
-
20
-
-
84903474472
-
Genetics as explanation: Limits to the human genome project
-
Cohen I.R., and Atlan H. Genetics as explanation: Limits to the human genome project. Encyclopedia Life Sci. (2006)
-
(2006)
Encyclopedia Life Sci.
-
-
Cohen, I.R.1
Atlan, H.2
-
22
-
-
0023365727
-
Statecharts: A visual formalism for complex systems
-
Harel D. Statecharts: A visual formalism for complex systems. Sci. Comput. Programm. 8 (1987) 231-274
-
(1987)
Sci. Comput. Programm.
, vol.8
, pp. 231-274
-
-
Harel, D.1
-
23
-
-
0031187475
-
Executable object modeling with statecharts
-
Harel D., and Gery E. Executable object modeling with statecharts. Computer 30 7 (1997) 31-42
-
(1997)
Computer
, vol.30
, Issue.7
, pp. 31-42
-
-
Harel, D.1
Gery, E.2
-
24
-
-
33847165824
-
-
D. Drusinsky, Model checking of statecharts using automatic white box test generation, circuites and systems, in: 48th Midwest Symposium on, 2005, pp. 327-332
-
-
-
-
25
-
-
17844384842
-
Reactive animation: Realistic modeling of complex dynamic systems
-
Efroni S., Harel D., and Cohen I.R. Reactive animation: Realistic modeling of complex dynamic systems. Computer 38 1 (2005) 38-47
-
(2005)
Computer
, vol.38
, Issue.1
, pp. 38-47
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
26
-
-
34047105227
-
Explaining a complex living system: Dynamics, multi-scaling and emergence
-
Cohen I.R., and Harel D. Explaining a complex living system: Dynamics, multi-scaling and emergence. J. Royal Soci. Inter. 4 (2007) 175-182
-
(2007)
J. Royal Soci. Inter.
, vol.4
, pp. 175-182
-
-
Cohen, I.R.1
Harel, D.2
|