-
1
-
-
0036796540
-
Predicting transcription factor synergism
-
S. Hannenhalli and S. Levy, "Predicting transcription factor synergism", Nucleic Acids Res, 2002, vol. 30, pp. 4278-84.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4278-4284
-
-
Hannenhalli, S.1
Levy, S.2
-
2
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Y. Pilpel, P. Sudarsanam, and G. M. Church, "Identifying regulatory networks by combinatorial analysis of promoter elements", Nat Genet, 2001, vol. 29, pp. 153-9.
-
(2001)
Nat Genet
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
3
-
-
0034714421
-
Gene expression data analysis
-
A. Brazma and J. Vilo, "Gene expression data analysis", FEBSLett, 2000, vol. 480, pp. 17-24.
-
(2000)
FEBSLett
, vol.480
, pp. 17-24
-
-
Brazma, A.1
Vilo, J.2
-
4
-
-
0036601150
-
Computational methods for the prediction of protein interactions
-
A. Valencia and F. Pazos, "Computational methods for the prediction of protein interactions", Curr Opin Struct Biol, 2000, vol. 12, pp. 368-73.
-
(2000)
Curr Opin Struct Biol
, vol.12
, pp. 368-373
-
-
Valencia, A.1
Pazos, F.2
-
5
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
B. Ren, F. Robert, J. J. Wyrick, O. Aparicio, E. G. Jennings, I. Simon, J. Zeitlinger, J. Schreiber, N. Hannett, E. Kanin, T. L. Volkert, C. J. Wilson, S. P. Bell, and R. A. Young, "Genome-wide location and function of DNA binding proteins", Science, 2000, vol. 290, pp. 2306-9.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
6
-
-
24144495286
-
Identifying cooperative transcriptional regulations using protein-protein interactions
-
N. Nagamine, Y. Kawada, and Y. Sakakibara, "Identifying cooperative transcriptional regulations using protein-protein interactions", Nucleic Acids Res, 2005, vol. 33, pp. 4828-37.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 4828-4837
-
-
Nagamine, N.1
Kawada, Y.2
Sakakibara, Y.3
-
7
-
-
0345099564
-
Identifying cooperativity among transcription factors controlling the cell cycle in yeast
-
N. Banerjee and M. Q. Zhang, "Identifying cooperativity among transcription factors controlling the cell cycle in yeast", Nucleic Acids Res, 2003, vol. 31, pp. 7024-31.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 7024-7031
-
-
Banerjee, N.1
Zhang, M.Q.2
-
8
-
-
13844319583
-
Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation
-
W. Wang, J. M. Cherry, Y. Nochomovitz, E. Jolly, D. Botstein, and H. Li, "Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation", Proc Natl Acad Sci USA, 2005, vol. 102, pp. 1998-2003.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 1998-2003
-
-
Wang, W.1
Cherry, J.M.2
Nochomovitz, Y.3
Jolly, E.4
Botstein, D.5
Li, H.6
-
9
-
-
9244257298
-
Interacting models of cooperative gene regulation
-
D. Das, N. Banerjee, and M. Q. Zhang, "Interacting models of cooperative gene regulation", Proc Natl Acad Sci U S A, 2004, vol 101, pp. 16234-9.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 16234-16239
-
-
Das, D.1
Banerjee, N.2
Zhang, M.Q.3
-
10
-
-
22344434546
-
Discovering functional transcription-factor combinations in the human cell cycle
-
Z. Zhu, J. Shendure, and G. M. Church, "Discovering functional transcription-factor combinations in the human cell cycle", Genome Res, 2005, vol. 15, pp. 848-55.
-
(2005)
Genome Res
, vol.15
, pp. 848-855
-
-
Zhu, Z.1
Shendure, J.2
Church, G.M.3
-
11
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
S. Chu, J. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P. O. Brown, and I. Herskowitz, "The transcriptional program of sporulation in budding yeast", Science, 1998, vol. 282, pp. 699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
12
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
T. I. Lee, N. J. Rinaldi, F. Robert, D. T. Odom, Z. Bar-Joseph, G. K. Gerber, and et al. , "Transcriptional regulatory networks in Saccharomyces cerevisiae", Science, 2000, vol. 298, pp. 799-804.
-
(2000)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
and et, al.7
-
13
-
-
17944372930
-
Serial regulation of transcriptional regulators in the yeast cell cycle
-
I. Simon, J. Barnett, N. Hannett, C. T. Harbison, N. J. Rinaldi, T. L. Volkert, and et al. , "Serial regulation of transcriptional regulators in the yeast cell cycle" Cell, 2001, vol. 106, pp. 697-708.
-
(2001)
Cell
, vol.106
, pp. 697-708
-
-
Simon, I.1
Barnett, J.2
Hannett, N.3
Harbison, C.T.4
Rinaldi, N.J.5
Volkert, T.L.6
and et, al.7
-
14
-
-
0034612501
-
Forkhead-like transcription factors recruit Nddl to the chromatin of G2/M-specific promoters
-
M. Koranda, A. Schleiffer, L. Endler, and G. Ammerer, "Forkhead-like transcription factors recruit Nddl to the chromatin of G2/M-specific promoters", Nature, 2000, vol. 406, pp. 94-8.
-
(2000)
Nature
, vol.406
, pp. 94-98
-
-
Koranda, M.1
Schleiffer, A.2
Endler, L.3
Ammerer, G.4
-
15
-
-
0141792394
-
Correlating protein-DNA and protein-protein interaction networks
-
T. Manke, R. Bringas, and M. Vingron, "Correlating protein-DNA and protein-protein interaction networks", J Mol Biol, 2003, vol. 333, pp. 75-85.
-
(2003)
J Mol Biol
, vol.333
, pp. 75-85
-
-
Manke, T.1
Bringas, R.2
Vingron, M.3
-
16
-
-
9444223924
-
Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress
-
M. Shapira, E. Segal, and D. Botstein, "Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress", Mol Biol Cell, 2004, vol. 15, pp. 5659-69.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 5659-5669
-
-
Shapira, M.1
Segal, E.2
Botstein, D.3
-
17
-
-
23744502897
-
Inferring yeast cell cycle regulators and interactions using transcription factor activities
-
Y. L. Yang, J. Suen, M. P. Brynildsen, S. J. Galbraith, and J C. Liao, "Inferring yeast cell cycle regulators and interactions using transcription factor activities", BMC Genomics, 2005, vol. 6, pp. 90.
-
(2005)
BMC Genomics
, vol.6
, pp. 90
-
-
Yang, Y.L.1
Suen, J.2
Brynildsen, M.P.3
Galbraith, S.J.4
Liao, J.C.5
-
18
-
-
26444501081
-
Statistical methods for identifying yeast cell cycle transcription factors
-
H. K. Tsai, H. H. Lu, and W. H. Li, "Statistical methods for identifying yeast cell cycle transcription factors", Proc Natl Acad Sci USA, 2005, vol. 102, pp. 13532-7.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13532-13537
-
-
Tsai, H.K.1
Lu, H.H.2
Li, W.H.3
-
19
-
-
0032831938
-
Association of the cell cycle transcription factor Mbpl with the Skn7 response regulator in budding yeast
-
N. Bouquin, A. L. Johnson, B. A. Morgan, and L. H. Johnston, "Association of the cell cycle transcription factor Mbpl with the Skn7 response regulator in budding yeast", Mol Biol Cell, 1999, vol. 10, pp. 3389-400.
-
(1999)
Mol Biol Cell
, vol.10
, pp. 3389-3400
-
-
Bouquin, N.1
Johnson, A.L.2
Morgan, B.A.3
Johnston, L.H.4
-
20
-
-
0343442520
-
Forkhead transcription factors, Fkhlp and Fkh2p, collaborate with Mcmlp to control transcription required for M-phase
-
R. Kumar, D. M. Reynolds, A. Shevchenko, S. D. Goldstone, and S. Dalton, "Forkhead transcription factors, Fkhlp and Fkh2p, collaborate with Mcmlp to control transcription required for M-phase", Curr Biol, 2000, vol. 10, pp. 896-906.
-
(2000)
Curr Biol
, vol.10
, pp. 896-906
-
-
Kumar, R.1
Reynolds, D.M.2
Shevchenko, A.3
Goldstone, S.D.4
Dalton, S.5
-
21
-
-
0031046266
-
Hirlp and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycle
-
M. S. Spector, A. Raff, H. DeSilva, K. Lee, and M. A. Osley, "Hirlp and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycle", Mol Cell Biol, 1997, vol. 17, pp. 545-52.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 545-552
-
-
Spector, M.S.1
Raff, A.2
DeSilva, H.3
Lee, K.4
Osley, M.A.5
-
22
-
-
0034636161
-
Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbpl and Swi4
-
I. A. Taylor, P. B. McIntosh, P. Pala, M. K. Treiber, S. Howell and et al, "Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbpl and Swi4", Biochemistry, 2000, vol. 39, pp. 3943-54.
-
(2000)
Biochemistry
, vol.39
, pp. 3943-3954
-
-
Taylor, I.A.1
McIntosh, P.B.2
Pala, P.3
Treiber, M.K.4
Howell, S.5
and et, al.6
-
23
-
-
0025015378
-
The HAP2 subunit of yeast CCAAT transcriptional activator contains adjacent domains for subunit association and DNA recognition: Model for the HAP2/3/4 complex
-
J. T. Olesen and L. Guarente, "The HAP2 subunit of yeast CCAAT transcriptional activator contains adjacent domains for subunit association and DNA recognition: model for the HAP2/3/4 complex", Genes Dev, 1990, vol. 4, pp. 1714-29.
-
(1990)
Genes Dev
, vol.4
, pp. 1714-1729
-
-
Olesen, J.T.1
Guarente, L.2
-
24
-
-
0034679603
-
The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF
-
A. Pic, F. L. Lim, S. J. Ross, E. A. Veal, A. L. Johnson, M. R. Sultan, and et al. , "The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF", Embo J, 2000, vol. 19, pp. 3750-61.
-
(2000)
Embo J
, vol.19
, pp. 3750-3761
-
-
Pic, A.1
Lim, F.L.2
Ross, S.J.3
Veal, E.A.4
Johnson, A.L.5
Sultan, M.R.6
and et, al.7
-
25
-
-
28244500972
-
Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae
-
X. J. He and J. S. Fassler, "Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae", Mol Microbiol, 2005, vol. 58, pp. 1454-67.
-
(2005)
Mol Microbiol
, vol.58
, pp. 1454-1467
-
-
He, X.J.1
Fassler, J.S.2
|