메뉴 건너뛰기




Volumn , Issue , 2006, Pages 357-360

Identifying synergistic transcriptional factors involved in the yeast cell cycle using Microarray and ChIP-chip data

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; COMPUTATIONAL METHODS; DATA REDUCTION; MICROPROCESSOR CHIPS; TRANSCRIPTION FACTORS;

EID: 38649099386     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/GCCW.2006.54     Document Type: Conference Paper
Times cited : (8)

References (25)
  • 1
    • 0036796540 scopus 로고    scopus 로고
    • Predicting transcription factor synergism
    • S. Hannenhalli and S. Levy, "Predicting transcription factor synergism", Nucleic Acids Res, 2002, vol. 30, pp. 4278-84.
    • (2002) Nucleic Acids Res , vol.30 , pp. 4278-4284
    • Hannenhalli, S.1    Levy, S.2
  • 2
    • 0034785443 scopus 로고    scopus 로고
    • Identifying regulatory networks by combinatorial analysis of promoter elements
    • Y. Pilpel, P. Sudarsanam, and G. M. Church, "Identifying regulatory networks by combinatorial analysis of promoter elements", Nat Genet, 2001, vol. 29, pp. 153-9.
    • (2001) Nat Genet , vol.29 , pp. 153-159
    • Pilpel, Y.1    Sudarsanam, P.2    Church, G.M.3
  • 3
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • A. Brazma and J. Vilo, "Gene expression data analysis", FEBSLett, 2000, vol. 480, pp. 17-24.
    • (2000) FEBSLett , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 4
    • 0036601150 scopus 로고    scopus 로고
    • Computational methods for the prediction of protein interactions
    • A. Valencia and F. Pazos, "Computational methods for the prediction of protein interactions", Curr Opin Struct Biol, 2000, vol. 12, pp. 368-73.
    • (2000) Curr Opin Struct Biol , vol.12 , pp. 368-373
    • Valencia, A.1    Pazos, F.2
  • 6
    • 24144495286 scopus 로고    scopus 로고
    • Identifying cooperative transcriptional regulations using protein-protein interactions
    • N. Nagamine, Y. Kawada, and Y. Sakakibara, "Identifying cooperative transcriptional regulations using protein-protein interactions", Nucleic Acids Res, 2005, vol. 33, pp. 4828-37.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4828-4837
    • Nagamine, N.1    Kawada, Y.2    Sakakibara, Y.3
  • 7
    • 0345099564 scopus 로고    scopus 로고
    • Identifying cooperativity among transcription factors controlling the cell cycle in yeast
    • N. Banerjee and M. Q. Zhang, "Identifying cooperativity among transcription factors controlling the cell cycle in yeast", Nucleic Acids Res, 2003, vol. 31, pp. 7024-31.
    • (2003) Nucleic Acids Res , vol.31 , pp. 7024-7031
    • Banerjee, N.1    Zhang, M.Q.2
  • 8
    • 13844319583 scopus 로고    scopus 로고
    • Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation
    • W. Wang, J. M. Cherry, Y. Nochomovitz, E. Jolly, D. Botstein, and H. Li, "Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation", Proc Natl Acad Sci USA, 2005, vol. 102, pp. 1998-2003.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 1998-2003
    • Wang, W.1    Cherry, J.M.2    Nochomovitz, Y.3    Jolly, E.4    Botstein, D.5    Li, H.6
  • 9
    • 9244257298 scopus 로고    scopus 로고
    • Interacting models of cooperative gene regulation
    • D. Das, N. Banerjee, and M. Q. Zhang, "Interacting models of cooperative gene regulation", Proc Natl Acad Sci U S A, 2004, vol 101, pp. 16234-9.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 16234-16239
    • Das, D.1    Banerjee, N.2    Zhang, M.Q.3
  • 10
    • 22344434546 scopus 로고    scopus 로고
    • Discovering functional transcription-factor combinations in the human cell cycle
    • Z. Zhu, J. Shendure, and G. M. Church, "Discovering functional transcription-factor combinations in the human cell cycle", Genome Res, 2005, vol. 15, pp. 848-55.
    • (2005) Genome Res , vol.15 , pp. 848-855
    • Zhu, Z.1    Shendure, J.2    Church, G.M.3
  • 14
    • 0034612501 scopus 로고    scopus 로고
    • Forkhead-like transcription factors recruit Nddl to the chromatin of G2/M-specific promoters
    • M. Koranda, A. Schleiffer, L. Endler, and G. Ammerer, "Forkhead-like transcription factors recruit Nddl to the chromatin of G2/M-specific promoters", Nature, 2000, vol. 406, pp. 94-8.
    • (2000) Nature , vol.406 , pp. 94-98
    • Koranda, M.1    Schleiffer, A.2    Endler, L.3    Ammerer, G.4
  • 15
    • 0141792394 scopus 로고    scopus 로고
    • Correlating protein-DNA and protein-protein interaction networks
    • T. Manke, R. Bringas, and M. Vingron, "Correlating protein-DNA and protein-protein interaction networks", J Mol Biol, 2003, vol. 333, pp. 75-85.
    • (2003) J Mol Biol , vol.333 , pp. 75-85
    • Manke, T.1    Bringas, R.2    Vingron, M.3
  • 16
    • 9444223924 scopus 로고    scopus 로고
    • Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress
    • M. Shapira, E. Segal, and D. Botstein, "Disruption of yeast forkhead-associated cell cycle transcription by oxidative stress", Mol Biol Cell, 2004, vol. 15, pp. 5659-69.
    • (2004) Mol Biol Cell , vol.15 , pp. 5659-5669
    • Shapira, M.1    Segal, E.2    Botstein, D.3
  • 17
    • 23744502897 scopus 로고    scopus 로고
    • Inferring yeast cell cycle regulators and interactions using transcription factor activities
    • Y. L. Yang, J. Suen, M. P. Brynildsen, S. J. Galbraith, and J C. Liao, "Inferring yeast cell cycle regulators and interactions using transcription factor activities", BMC Genomics, 2005, vol. 6, pp. 90.
    • (2005) BMC Genomics , vol.6 , pp. 90
    • Yang, Y.L.1    Suen, J.2    Brynildsen, M.P.3    Galbraith, S.J.4    Liao, J.C.5
  • 18
    • 26444501081 scopus 로고    scopus 로고
    • Statistical methods for identifying yeast cell cycle transcription factors
    • H. K. Tsai, H. H. Lu, and W. H. Li, "Statistical methods for identifying yeast cell cycle transcription factors", Proc Natl Acad Sci USA, 2005, vol. 102, pp. 13532-7.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 13532-13537
    • Tsai, H.K.1    Lu, H.H.2    Li, W.H.3
  • 19
    • 0032831938 scopus 로고    scopus 로고
    • Association of the cell cycle transcription factor Mbpl with the Skn7 response regulator in budding yeast
    • N. Bouquin, A. L. Johnson, B. A. Morgan, and L. H. Johnston, "Association of the cell cycle transcription factor Mbpl with the Skn7 response regulator in budding yeast", Mol Biol Cell, 1999, vol. 10, pp. 3389-400.
    • (1999) Mol Biol Cell , vol.10 , pp. 3389-3400
    • Bouquin, N.1    Johnson, A.L.2    Morgan, B.A.3    Johnston, L.H.4
  • 20
    • 0343442520 scopus 로고    scopus 로고
    • Forkhead transcription factors, Fkhlp and Fkh2p, collaborate with Mcmlp to control transcription required for M-phase
    • R. Kumar, D. M. Reynolds, A. Shevchenko, S. D. Goldstone, and S. Dalton, "Forkhead transcription factors, Fkhlp and Fkh2p, collaborate with Mcmlp to control transcription required for M-phase", Curr Biol, 2000, vol. 10, pp. 896-906.
    • (2000) Curr Biol , vol.10 , pp. 896-906
    • Kumar, R.1    Reynolds, D.M.2    Shevchenko, A.3    Goldstone, S.D.4    Dalton, S.5
  • 21
    • 0031046266 scopus 로고    scopus 로고
    • Hirlp and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycle
    • M. S. Spector, A. Raff, H. DeSilva, K. Lee, and M. A. Osley, "Hirlp and Hir2p function as transcriptional corepressors to regulate histone gene transcription in the Saccharomyces cerevisiae cell cycle", Mol Cell Biol, 1997, vol. 17, pp. 545-52.
    • (1997) Mol Cell Biol , vol.17 , pp. 545-552
    • Spector, M.S.1    Raff, A.2    DeSilva, H.3    Lee, K.4    Osley, M.A.5
  • 22
    • 0034636161 scopus 로고    scopus 로고
    • Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbpl and Swi4
    • I. A. Taylor, P. B. McIntosh, P. Pala, M. K. Treiber, S. Howell and et al, "Characterization of the DNA-binding domains from the yeast cell-cycle transcription factors Mbpl and Swi4", Biochemistry, 2000, vol. 39, pp. 3943-54.
    • (2000) Biochemistry , vol.39 , pp. 3943-3954
    • Taylor, I.A.1    McIntosh, P.B.2    Pala, P.3    Treiber, M.K.4    Howell, S.5    and et, al.6
  • 23
    • 0025015378 scopus 로고
    • The HAP2 subunit of yeast CCAAT transcriptional activator contains adjacent domains for subunit association and DNA recognition: Model for the HAP2/3/4 complex
    • J. T. Olesen and L. Guarente, "The HAP2 subunit of yeast CCAAT transcriptional activator contains adjacent domains for subunit association and DNA recognition: model for the HAP2/3/4 complex", Genes Dev, 1990, vol. 4, pp. 1714-29.
    • (1990) Genes Dev , vol.4 , pp. 1714-1729
    • Olesen, J.T.1    Guarente, L.2
  • 24
    • 0034679603 scopus 로고    scopus 로고
    • The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF
    • A. Pic, F. L. Lim, S. J. Ross, E. A. Veal, A. L. Johnson, M. R. Sultan, and et al. , "The forkhead protein Fkh2 is a component of the yeast cell cycle transcription factor SFF", Embo J, 2000, vol. 19, pp. 3750-61.
    • (2000) Embo J , vol.19 , pp. 3750-3761
    • Pic, A.1    Lim, F.L.2    Ross, S.J.3    Veal, E.A.4    Johnson, A.L.5    Sultan, M.R.6    and et, al.7
  • 25
    • 28244500972 scopus 로고    scopus 로고
    • Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae
    • X. J. He and J. S. Fassler, "Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae", Mol Microbiol, 2005, vol. 58, pp. 1454-67.
    • (2005) Mol Microbiol , vol.58 , pp. 1454-1467
    • He, X.J.1    Fassler, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.