Cloning and sequencing of capsid protein of Indian isolate of extra small virus from Macrobrachium rosenbergii

Virus Research

Volumn 131, Issue 2, 2008, Pages 283-287

  Sudhakaran, R ^a   Syed Musthaq, S ^a   Rajesh Kumar, S ^a   Sarathi, M ^a   Sahul Hameed, A S ^a  

^a C ABDUL HAKEEM COLLEGE   (India)

Author keywords

Macrobrachium rosenbergii; MrNV and XSV; RT PCR; Sequence comparison

Indexed keywords

CAPSID PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHINA; EXTRA SMALL VIRUS; FRANCE; INDIA; MACROBRACHIUM ROSENBERGII; MOLECULAR CLONING; NODAVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POINT MUTATION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TAIWAN; VIRUS ISOLATION; VIRUS LIKE AGENT;

AMINO ACID SUBSTITUTION; ANIMALS; BASE SEQUENCE; CAPSID PROTEINS; CLONING, MOLECULAR; EPIDEMIOLOGY, MOLECULAR; INDIA; MOLECULAR SEQUENCE DATA; PALAEMONIDAE; PHYLOGENY; POINT MUTATION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRUSES;

MACROBRACHIUM ROSENBERGII; MACROBRACHIUM ROSENBERGII NODAVIRUS; MIRIDAE;

EID: 38649085611     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2007.08.016     Document Type: Article

References (21)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Arcier J.M., Herman F., Lightner D.V., Redman R., Mari J., and Bonami J.R. A viral disease associated with mortalities in hatchery-reared postlarvae of the giant freshwater prawn Macrobrachium rosenbergii. Dis. Aquat. Organ. 38 (1999) 177-181
3. AQUACOP. Observation on diseases of crustacean culture in Polynesia. Proc. World Mari. Soc. 8 (1977) 685-703
4. Bonami J.R., Shi Z., Qian D., and Sri Widada J. White tail disease of the giant freshwater prawn, Macrobrachium rosenbergii: separation of the associated virions and characterization of MrNV as a new type of nodavirus. J. Fish Dis. 28 (2005) 23-31
5. Garzon S., and Charpentier G. Nodaviridae. In: Adams J.R., and Bonami J.R. (Eds). Atlas of Invertebrate Viruses (1992), CRC Press, Boca Raton, FL 351-370
6. Qian D., Shi Z., Zhang S., Cao Z., Liu W., Li L., Xie Y., Cambournac I., and Bonami J.R. Extra small virus-like particles (XSV) and nodavirus associated with whitish muscle disease in the giant freshwater prawn, Macrobrachium rosenbergii. J. Fish Dis. 26 (2003) 521-527
7. Romestand B., and Bonami J.R. A sandwich enzyme linked immunosorbent assay (S-ELISA) for detection of MrNV in the giant freshwater prawn, Macrobrachium rosenbergii (de Man). J. Fish Dis. 26 (2003) 71-75
8. Sahul Hameed A.S., Yoganandhan K., Sri Widada J., and Bonami J.R. Studies on the occurrence and RT-PCR detection of Macrobrachium rosenbergii nodavirus and extra small virus-like particles associated with white tail disease of Macrobrachium rosenbergii in India. Aquaculture 238 (2004) 127-133
9. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
10. Shekhar M.S., Azad I.S., and Jithendran K.P. RT-PCR and sequence analysis of Macrobrachium rosenbergii nodavirus: Indian isolate. Aquaculture 252 (2005) 128-132
11. Sommerset I., and Nerland A.H. Complete sequence of RNA1 and subgenomic RNA3 of Atlantic halibut nodavirus (AHNV). Dis. Aquat. Org. 58 (2004) 117-125
12. Sri Widada J., Durand S., Cambournac, Qian D., Shi Z., Dejonghe E., Richard V., and Bonami J.R. Genome-based detection methods of Macrobrachium rosenbergii nodavirus, a pathogen of the giant freshwater prawn, Macrobrachium rosenbergii: dot-blot, in situ hybridization and RT-PCR. J. Fish Dis. 26 (2003) 583-590
13. Sri Widada J., and Bonami J.R. Characteristics of the monocistronic genome of extra small virus, a virus-like particle associated with Macrobrachium rosenbergii nodavirus: possible candidate for a new species of satellite virus. J. Gen. Virol. 85 (2004) 643-646
14. Sudhakaran R., Syed Musthaq S., Haribabu P., Mukherjee S.C., Gopal C., and Sahul Hameed A.S. Experimental transmission of Macrobrachium rosenbergii noda virus (MrNV) and extra small virus (XSV) in three species of marine shrimp (Penaeus indicus Penaeus japonicus and Penaeus monodon). Aquaculture 257 (2006) 136-141
15. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
16. Tripathy S., Sahoo P.K., Kumari J., Mishra B.K., Sarangi N., and Ayyappan S. Multiplex RT-PCR detection and sequence comparison of viruses MrNV and XSV associated with white tail disease in Macrobrachium rosenbergii. Aquaculture 258 (2006) 134-139
17. Tung C.W., Wang C.S., and Chen S.N. Histological and electron microscopic study on Macrobrachium muscle virus (MMV) infection in the giant freshwater prawn, Macrobrachium rosenbergii (de Man), cultured in Taiwan. J. Fish Dis. 22 (1999) 1-5
18. van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Cartens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B. Virus Taxonomy: Classification and Nomenclature of Viruses. Seventh Report of the International Committee on Taxonomy of Viruses (2000), Academic Press, San Diego
19. Wang, C.S., Chang, J.S., 2006. RT-PCR amplification and sequence analysis of Macrobrachium rosenbergii nodavirus and extra small virus (XSV) associated with white tail disease of M. rosenbergii (de Man) cultured in Taiwan. GenBank Direct Submission.
20. Yoganandhan K., Leartvibhan M., Sriwongpuk S., and Limsuwan C. White tail disease of the giant freshwater prawn Macrobrachium rosenbergii in Thailand. Dis. Aquatic. Org. 69 (2006) 255-258
21. Zhang, H., Yuan, J., Qian, D., Zhang, X., Wang, J. Shi, Z., 2005. The sequencing of an extra small virus isolated from white-tail-diseased giant fresh water prawn, Macrobrachium rosenbergii. Genbank direct submission.