-
1
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 2000;406:536-40.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
-
2
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-11.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
-
3
-
-
2942608807
-
-
New York, NY: Springer;, Chapter 9
-
Simon RM, Korn EL, McShane LM, Radmacher MD, Wright GW, Zhao Y. Design and analysis of DNA microarray investigations. New York, NY: Springer; 2004. Chapter 9.
-
(2004)
Design and analysis of DNA microarray investigations
-
-
Simon, R.M.1
Korn, E.L.2
McShane, L.M.3
Radmacher, M.D.4
Wright, G.W.5
Zhao, Y.6
-
4
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999;286:531-7.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
-
6
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sørlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, et al. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci USA 2003;100:8418-23.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8418-8423
-
-
Sørlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.S.5
Nobel, A.6
-
7
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sørlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, et al. Molecular portraits of human breast tumours. Nature 2000;406:747-52.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sørlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
-
8
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sørlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, et al. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA 2001;98:10869-74.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10869-10874
-
-
Sørlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
-
9
-
-
28344454000
-
Molecular classification and molecular forecasting of breast cancer: Ready for clinical application?
-
Brenton JD, Carey LA, Ahmed AA, Caldas C. Molecular classification and molecular forecasting of breast cancer: ready for clinical application? J Clin Oncol 2005;23:7350-60.
-
(2005)
J Clin Oncol
, vol.23
, pp. 7350-7360
-
-
Brenton, J.D.1
Carey, L.A.2
Ahmed, A.A.3
Caldas, C.4
-
10
-
-
33644646638
-
How to best classify breast cancer: Conventional and novel classifications (review)
-
Charafe-Jauffret E, Ginestier C, Monville F, Fekairi S, Jacquemier J, Birnbaum D, et al. How to best classify breast cancer: conventional and novel classifications (review). Int J Oncol 2005;27:1307-13.
-
(2005)
Int J Oncol
, vol.27
, pp. 1307-1313
-
-
Charafe-Jauffret, E.1
Ginestier, C.2
Monville, F.3
Fekairi, S.4
Jacquemier, J.5
Birnbaum, D.6
-
11
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
-
Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, et al. Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc Natl Acad Sci USA 2003;100:10393-8.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.Y.2
McShane, L.M.3
Korn, E.L.4
Long, P.M.5
Jazaeri, A.6
-
12
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, et al. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002;415:484-5.
-
(2002)
Nature
, vol.415
, pp. 484-485
-
-
van 't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
-
13
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002;347:1999-2009.
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
van de Vijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
-
14
-
-
0038244058
-
-
Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, Horng CF, et al. Gene expression predictors of breast cancer outcomes. Lancet 2003;361:1590-6.
-
Huang E, Cheng SH, Dressman H, Pittman J, Tsou MH, Horng CF, et al. Gene expression predictors of breast cancer outcomes. Lancet 2003;361:1590-6.
-
-
-
-
15
-
-
2942729848
-
Gene expression profiles predict complete pathologic response to neoadjuvant paclitaxel and fl uorouracil, doxorubicin, and cyclophosphamide chemotherapy in breast cancer
-
Ayers M, Symmans WF, Stec J, Damokosh AI, Clark E, Hess K, et al. Gene expression profiles predict complete pathologic response to neoadjuvant paclitaxel and fl uorouracil, doxorubicin, and cyclophosphamide chemotherapy in breast cancer. J Clin Oncol 2004;22:2284-93.
-
(2004)
J Clin Oncol
, vol.22
, pp. 2284-2293
-
-
Ayers, M.1
Symmans, W.F.2
Stec, J.3
Damokosh, A.I.4
Clark, E.5
Hess, K.6
-
16
-
-
2942578063
-
A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen
-
Ma XJ, Wang Z, Ryan PD, Isakoff SJ, Barmettler A, Fuller A, et al. A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen. Cancer Cell 2004;5:607-16.
-
(2004)
Cancer Cell
, vol.5
, pp. 607-616
-
-
Ma, X.J.1
Wang, Z.2
Ryan, P.D.3
Isakoff, S.J.4
Barmettler, A.5
Fuller, A.6
-
17
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, Sieuwerts AM, Look MP, Yang F, et al. Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 2005;365:671-9.
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
Yang, F.6
-
18
-
-
33645825388
-
Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer
-
Foekens JA, Atkins D, Zhang Y, Sweep FC, Harbeck N, Paradiso A, et al. Multicenter validation of a gene expression-based prognostic signature in lymph node-negative primary breast cancer. J Clin Oncol 2006;24:1665-71.
-
(2006)
J Clin Oncol
, vol.24
, pp. 1665-1671
-
-
Foekens, J.A.1
Atkins, D.2
Zhang, Y.3
Sweep, F.C.4
Harbeck, N.5
Paradiso, A.6
-
19
-
-
2542454682
-
Different gene expression patterns in invasive lobular and ductal carcinomas of the breast
-
Zhao H, Langerod A, Ji Y, Nowels KW, Nesland JM, Tibshirani R, et al. Different gene expression patterns in invasive lobular and ductal carcinomas of the breast. Mol Biol Cell 2004;15:2523-36.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 2523-2536
-
-
Zhao, H.1
Langerod, A.2
Ji, Y.3
Nowels, K.W.4
Nesland, J.M.5
Tibshirani, R.6
-
20
-
-
2442691827
-
Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements
-
Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, et al. Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements. Nucleic Acids Res 2004;32:e74.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Mecham, B.H.1
Klus, G.T.2
Strovel, J.3
Augustus, M.4
Byrne, D.5
Bozso, P.6
-
21
-
-
20144386127
-
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival
-
Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sørlie T, et al. Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival. Proc Natl Acad Sci USA 2005;102:3738-43.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3738-3743
-
-
Chang, H.Y.1
Nuyten, D.S.2
Sneddon, J.B.3
Hastie, T.4
Tibshirani, R.5
Sørlie, T.6
-
22
-
-
22744448864
-
Identification of molecular apocrine breast tumours by microarray analysis
-
Farmer P, Bonnefoi H, Becette V, Tubiana-Hulin M, Fumoleau P, Larsimont D, et al. Identification of molecular apocrine breast tumours by microarray analysis. Oncogene 2005;24:4660-71.
-
(2005)
Oncogene
, vol.24
, pp. 4660-4671
-
-
Farmer, P.1
Bonnefoi, H.2
Becette, V.3
Tubiana-Hulin, M.4
Fumoleau, P.5
Larsimont, D.6
-
23
-
-
33646390671
-
Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers
-
Bertucci F, Finetti P, Cervera N, Charafe-Jauffret E, Mamessier E, Adelaide J, et al. Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers. Cancer Res 2006;66:4636-44.
-
(2006)
Cancer Res
, vol.66
, pp. 4636-4644
-
-
Bertucci, F.1
Finetti, P.2
Cervera, N.3
Charafe-Jauffret, E.4
Mamessier, E.5
Adelaide, J.6
-
24
-
-
33645226683
-
Identification of cell-of-origin breast tumor subtypes in inflammatory breast cancer by gene expression profiling
-
Van Laere SJ, Van den Eynden GG, Van der Auwera I, Vandenberghe M, van Dam P, Van Marck EA, et al. Identification of cell-of-origin breast tumor subtypes in inflammatory breast cancer by gene expression profiling. Breast Cancer Res Treat 2006;95:243-55.
-
(2006)
Breast Cancer Res Treat
, vol.95
, pp. 243-255
-
-
Van Laere, S.J.1
Van den Eynden, G.G.2
Van der Auwera, I.3
Vandenberghe, M.4
van Dam, P.5
Van Marck, E.A.6
-
25
-
-
33745834662
-
Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: Gene expression analyses across three different platforms
-
Sørlie T, Wang Y, Xiao C, Johnsen H, Naume B, Samaha RR, et al. Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms. BMC Genomics 2006;7:127.
-
(2006)
BMC Genomics
, vol.7
, pp. 127
-
-
Sørlie, T.1
Wang, Y.2
Xiao, C.3
Johnsen, H.4
Naume, B.5
Samaha, R.R.6
-
26
-
-
33745948105
-
Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients
-
Calza S, Hall P, Auer G, Bjohle J, Klaar S, Kronenwett U, et al. Intrinsic molecular signature of breast cancer in a population-based cohort of 412 patients. Breast Cancer Res 2006;8:R34.
-
(2006)
Breast Cancer Res
, vol.8
-
-
Calza, S.1
Hall, P.2
Auer, G.3
Bjohle, J.4
Klaar, S.5
Kronenwett, U.6
-
27
-
-
4143089281
-
Conservation of breast cancer molecular subtypes and transcriptional patterns of tumor progression across distinct ethnic populations
-
Yu K, Lee CH, Tan PH, Tan P. Conservation of breast cancer molecular subtypes and transcriptional patterns of tumor progression across distinct ethnic populations. Clin Cancer Res 2004;10:5508-17.
-
(2004)
Clin Cancer Res
, vol.10
, pp. 5508-5517
-
-
Yu, K.1
Lee, C.H.2
Tan, P.H.3
Tan, P.4
-
28
-
-
19944426750
-
Gene expression profiling of breast cancer in relation to estrogen receptor status and estrogen-metabolizing enzymes: Clinical implications
-
Kristensen VN, Sørlie T, Geisler J, Langerod A, Yoshimura N, Karesen R, et al. Gene expression profiling of breast cancer in relation to estrogen receptor status and estrogen-metabolizing enzymes: clinical implications. Clin Cancer Res 2005;11:878s-83s.
-
(2005)
Clin Cancer Res
, vol.11
-
-
Kristensen, V.N.1
Sørlie, T.2
Geisler, J.3
Langerod, A.4
Yoshimura, N.5
Karesen, R.6
-
29
-
-
13244252382
-
Loss of heterozygosity and its correlation with expression profiles in subclasses of invasive breast cancers
-
Wang ZC, Lin M, Wei LJ, Li C, Miron A, Lodeiro G, et al. Loss of heterozygosity and its correlation with expression profiles in subclasses of invasive breast cancers. Cancer Res 2004;64:64-71.
-
(2004)
Cancer Res
, vol.64
, pp. 64-71
-
-
Wang, Z.C.1
Lin, M.2
Wei, L.J.3
Li, C.4
Miron, A.5
Lodeiro, G.6
-
30
-
-
23844549918
-
Breast cancer molecular subtypes respond differently to preoperative chemotherapy
-
Rouzier R, Perou CM, Symmans WF, Ibrahim N, Cristofanilli M, Anderson K, et al. Breast cancer molecular subtypes respond differently to preoperative chemotherapy. Clin Cancer Res 2005;11:5678-85.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 5678-5685
-
-
Rouzier, R.1
Perou, C.M.2
Symmans, W.F.3
Ibrahim, N.4
Cristofanilli, M.5
Anderson, K.6
-
31
-
-
27144488136
-
Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer
-
Weigelt B, Hu Z, He X, Livasy C, Carey LA, Ewend MG, et al. Molecular portraits and 70-gene prognosis signature are preserved throughout the metastatic process of breast cancer. Cancer Res 2005;65:9155-8.
-
(2005)
Cancer Res
, vol.65
, pp. 9155-9158
-
-
Weigelt, B.1
Hu, Z.2
He, X.3
Livasy, C.4
Carey, L.A.5
Ewend, M.G.6
-
32
-
-
33746547467
-
Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay
-
Perreard L, Fan C, Quackenbush JF, Mullins M, Gauthier NP, Nelson E, et al. Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay. Breast Cancer Res 2006;8:R23.
-
(2006)
Breast Cancer Res
, vol.8
-
-
Perreard, L.1
Fan, C.2
Quackenbush, J.F.3
Mullins, M.4
Gauthier, N.P.5
Nelson, E.6
-
33
-
-
33645462419
-
Evaluation of MetriGenix custom 4D arrays applied for detection of breast cancer subtypes
-
Muggerud AA, Johnsen H, Barnes DA, Steel A, Lonning PE, Naume B, et al. Evaluation of MetriGenix custom 4D arrays applied for detection of breast cancer subtypes. BMC Cancer 2006;6:59.
-
(2006)
BMC Cancer
, vol.6
, pp. 59
-
-
Muggerud, A.A.1
Johnsen, H.2
Barnes, D.A.3
Steel, A.4
Lonning, P.E.5
Naume, B.6
-
34
-
-
33645820586
-
Estrogen-regulated genes predict survival in hormone receptor-positive breast cancers
-
Oh DS, Troester MA, Usary J, Hu Z, He X, Fan C, et al. Estrogen-regulated genes predict survival in hormone receptor-positive breast cancers. J Clin Oncol 2006;24:1656-64.
-
(2006)
J Clin Oncol
, vol.24
, pp. 1656-1664
-
-
Oh, D.S.1
Troester, M.A.2
Usary, J.3
Hu, Z.4
He, X.5
Fan, C.6
-
35
-
-
33646874546
-
The molecular portraits of breast tumors are conserved across microarray platforms
-
Hu Z, Fan C, Oh DS, Marron JS, He X, Qaqish BF, et al. The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 2006;7:96.
-
(2006)
BMC Genomics
, vol.7
, pp. 96
-
-
Hu, Z.1
Fan, C.2
Oh, D.S.3
Marron, J.S.4
He, X.5
Qaqish, B.F.6
-
36
-
-
33746910265
-
Concordance among gene-expression-based predictors for breast cancer
-
Fan C, Oh DS, Wessels L, Weigelt B, Nuyten DSA, Nobel AB, et al. Concordance among gene-expression-based predictors for breast cancer. N Engl J Med 2006;355:560-9.
-
(2006)
N Engl J Med
, vol.355
, pp. 560-569
-
-
Fan, C.1
Oh, D.S.2
Wessels, L.3
Weigelt, B.4
Nuyten, D.S.A.5
Nobel, A.B.6
-
37
-
-
33748578365
-
Molecular classification of breast cancer: Limitations and potential
-
Pusztai L, Mazouni C, Anderson K, Wu Y, Symmans WF. Molecular classification of breast cancer: limitations and potential. Oncologist 2006;11:868-77.
-
(2006)
Oncologist
, vol.11
, pp. 868-877
-
-
Pusztai, L.1
Mazouni, C.2
Anderson, K.3
Wu, Y.4
Symmans, W.F.5
-
38
-
-
33845438621
-
Are clusters found in one dataset present in another dataset?
-
Kapp AV, Tibshirani R. Are clusters found in one dataset present in another dataset? Biostatistics 2007;8:9-31.
-
(2007)
Biostatistics
, vol.8
, pp. 9-31
-
-
Kapp, A.V.1
Tibshirani, R.2
-
39
-
-
33644838290
-
Molecular forecasting of breast cancer: Time to move forward with clinical testing
-
author reply 722-3
-
Loi S, Sotiriou C, Buyse M, Rutgers E, van't Veer L, Piccart M, et al. Molecular forecasting of breast cancer: time to move forward with clinical testing. J Clin Oncol 2006;24:721-2; author reply 722-3.
-
(2006)
J Clin Oncol
, vol.24
, pp. 721-722
-
-
Loi, S.1
Sotiriou, C.2
Buyse, M.3
Rutgers, E.4
van't Veer, L.5
Piccart, M.6
-
40
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West M, Blanchette C, Dressman H, Huang E, Ishida S, Spang R, et al. Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci USA 2001;98:11462-7.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
-
41
-
-
28444445926
-
-
Vienna Austria, R Foundation for Statistical Computing;, ISBN 3-900051-07-0. Available at:, Last accessed: October 22, 2007
-
R Development Core Team. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing; 2005. ISBN 3-900051-07-0. Available at: http://www.R-project.org. [Last accessed: October 22, 2007.]
-
(2005)
R: A language and environment for statistical computing
-
-
-
42
-
-
0022477197
-
Confidence intervals for reporting results of clinical trials
-
Simon R. Confidence intervals for reporting results of clinical trials. Ann Intern Med 1986;105:429-35.
-
(1986)
Ann Intern Med
, vol.105
, pp. 429-435
-
-
Simon, R.1
-
43
-
-
0022517955
-
Characterization of breast carcinomas by two monoclonal antibodies distinguishing myoepithelial from luminal epithelial cells
-
Nagle RB, Bocker W, Davis JR, Heid HW, Kaufmann M, Lucas DO, et al. Characterization of breast carcinomas by two monoclonal antibodies distinguishing myoepithelial from luminal epithelial cells. J Histochem Cytochem 1986;34:869-81.
-
(1986)
J Histochem Cytochem
, vol.34
, pp. 869-881
-
-
Nagle, R.B.1
Bocker, W.2
Davis, J.R.3
Heid, H.W.4
Kaufmann, M.5
Lucas, D.O.6
-
45
-
-
33746547467
-
Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay
-
Perreard L, Fan C, Quackenbush JF, Mullins M, Gauthier NP, Nelson E, et al. Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay. Breast Cancer Res 2006;8:R23.
-
(2006)
Breast Cancer Res
, vol.8
-
-
Perreard, L.1
Fan, C.2
Quackenbush, J.F.3
Mullins, M.4
Gauthier, N.P.5
Nelson, E.6
|