Using lambda networks to enhance performance of interactive large simulations

e-Science 2006 - Second IEEE International Conference on e-Science and Grid Computing

Volumn , Issue , 2006, Pages 40-

  Harvey, Matt ^b   Jha, Shantenu ^a   Thyveetil, Mary Ann ^a   Coveney, Peter ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

Interactive simulations; Lambda networks; Lightpaths; Molecular dynamics; NISTNet; Performance monitoring; Supercomputers; Visualisation

Indexed keywords

COMPUTER SIMULATION; INTERACTIVE COMPUTER SYSTEMS; PACKET LOSS; PROGRAM PROCESSORS; QUALITY OF SERVICE; SUPERCOMPUTERS;

INTERACTIVE SIMULATIONS; LAMBDA NETWORKS; LIGHTPATHS; PERFORMANCE MONITORINGS;

NETWORKS (CIRCUITS);

EID: 38449086434     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/E-SCIENCE.2006.261124     Document Type: Conference Paper

References (26)

1. S. Jha, P. V. Coveney, M. J. Harvey, and R. Pinning, "SPICE: Simulated Pore Interactive Computing Environment," Proceedings of the 2005 ACM/IEEE eorferenee on Supercomputing, p. 70, 2005, dx.doi.org/10.1109/SC.2005.65.
2. A. Hirantji L. Renambot, B. Jeong, J. Leigh, A. Verlo, V. Vishwanath, R. Singh, J. Aguilera, A. Johnson, and T. A. DeFanti, "The first functional demonstration of optical virtual concatenation as: a technique fer achieving terabit networking," Future Generation Computer Systems, vol. 22, pp. 876-883, 2006.
3. J. Mambretti, R. Gold, F. Yeh, and J. Chen, "Amroeba: Computational astrophysics modeling: enabled by dynamlp lambda switching," Future Generation Computer Systems, vol. 22, pp. 949-954, 2006.
4. http://www.ieair,org/orrininet.
5. R. L. Grossman, Y. Gu, D. Hanley, M. Sabala, J. Mambretti, A. Szalay, A. Thakar, K. Kumazoe, O., Yuji, and M. Lee "Data mining middleware for wide-area high-performance networks," Future Generation Computer Symms, vol. 22, pp. 940-948, 2006.
6. L. Smarr, T. DeFanti, M. D. Brown, and C. de. Laat, "Special section: igrid 2005: The global lambda integrated facility," Future Generation Computer Systems, vol. 22, pp. 849-851, 2006.
7. D. K. Lubensky and D. R. Nelson. Phys. Rev E, 31917 (65), 1999:
8. Ralf Metzler and Joseph Klafter Biophysical Journal, 2776 (85), 2003;
9. Stefan Howorka and Hagan Bayley, Biophysical Journal, 3202 (83), 2002.
10. A. Meller et al, Phys. Rev Lett., 3435 (86) 2003;
11. A. E Sauer-Budge et al. Phys. Rev. Lett. 90(23), 238101, 2003.
12. M. Earplus and J. A. McCammon, "Molecular Dynamics Simulations of Biomolecutes," Nature Structural Biology, vol. 9, no. 9, pp. 646-652, 2002.
13. B. Boghosian, P. Coveney, S. Dong, L. Finn, S. Jha, G. Karniadakis, and N. Karonis, "Nektar, SPICE and Vortonics - Using Federated Grids for Large Scale Scientific Applications," in Proceedings of Challenges of Large Applications in Distributed Environments (CLADE) 2006, vol. IEEE Catalog Number: 06EX13197, Paris, June 2006, pp. 32-42, ISBN 1-4244-0420-7.
14. http://www.glif.is.
15. JISC, "UKLight Switched Optical Lightpath Network," http://www.uklight.
16. M. Carson and D. Santay, "NISTNet - A Linux-based Network Emulation Tool," Computer Communication Review, Vol. 6, 2003.
17. Netfilter; "Iptables," http://www.netfuter.org/projects/ iptables/index.html.
18. J. C. Philips, R. Braun, W. Wang, J. Gumbart, & Tajkhorshid, E. Villa, C. Chipot, R. D. Skeel, L. Kale, and K. Schuten, "Scalable molecular dynamics with NAME," Journal of Computational Chemistry, vol. 26, pp. 1781-1802, 2005.
19. W. Humphrey, A. Dalke, and R. Schulten, "VMD - Visual Molecular Dynamics" Journal of Molecular Graphics, vol. 14; pp. 33-38, 1996.
20. S. Jha, P. V. Coveney, and M. J. Harvey "SPICE; Simulated pore interactive computing environment," Proceedings of ACM/IEEE SC - 05, 2005, - Using Federated Grids for "Grand Challenge" Biomolecular Simulations.
21. http://www.uklight.ac.uk.
22. U. o. S. C. Information Sciences institute, 1981, rFC 793: Transmission Control Protocol http://rfc.net/rfc793.html.
23. K. Y. Sanbonmatsu, S. Joseph, and C.-S. Tung, "Simulating movement of tRNA into the ribosome during decoding" PNAS, vol. 102, no. 44, pp. 15 854-15 859, 2005. [Online]. Available.-http://www.pnas.org/cgi/content/ abstract/102/44/15854
24. P. Veiten, R. Hinden, and J. Sax, 1984, rFC 908: Reliable Data Protocol Version 1 http://rfc.net/rfc908.html.
25. C. Partridge and R. Hinden, 1990, rFC 1151; Reliable Data Protocol Version 2 http://rfc.net/rfc1151.html.
26. http://www.eslea.uklight.ac.uk.