DNA microarray analysis of vitamin D-induced gene expression in a human colon carcinoma cell line

Physiological Genomics

Volumn 17, Issue , 2004, Pages 122-129

  Wood, Richard J ^a   Tchack, Laurie ^a   Angelo, Giana ^a   Pratt, Richard E ^b   Sonna, Larry A ^b,c  

^a TUFTS UNIVERSITY   (United States)

^b BRIGHAM AND WOMEN S HOSPITAL   (United States)

^c U S ARMY RESEARCH INSTITUTE OF ENVIRONMENTAL MEDICINE   (United States)

Author keywords

Caco 2 cells; Calcitriol; High density oligonucleotide arrays

Indexed keywords

25 HYDROXYVITAMIN D; 25 HYDROXYVITAMIN D 24 HYDROXYLASE; AMPHIREGULIN; CALCITRIOL; CARBONATE DEHYDRATASE; CARBONATE DEHYDRATASE XII; CARCINOEMBRYONIC ANTIGEN; CEACAM6 PROTEIN; CERULOPLASMIN; ONCOPROTEIN; OXYGENASE; SORCIN; TRANSCRIPTION FACTOR JUNB; UNCLASSIFIED DRUG; VITAMIN D; MESSENGER RNA; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CELL STRAIN CACO 2; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION; HUMAN; HUMAN CELL; INTESTINE EPITHELIUM CELL; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; DRUG EFFECT; GENE EXPRESSION PROFILING; GENETICS; INTESTINE CELL; METABOLISM; PROTEIN SYNTHESIS;

CACO-2 CELLS; CALCITRIOL; ENTEROCYTES; GENE EXPRESSION; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BIOSYNTHESIS; PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER;

EID: 3843146549     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00002.2003     Document Type: Article

References (48)

1. Akutsu N, Bastien Y, Lin R, Mader S, and White JH. Amphiregulin is a vitamin D3 target gene in squamous cell and breast carcinoma. Biochem Biophys Res Commun 281: 1051-1056, 2001.
2. Baranov V, Yeung MM, and Hammarstrom S. Expression of carcinoembryonic antigen and nonspecific cross-reacting 50-kDa antigen in human normal and cancerous colon mucosa: comparative ultrastructural study with monoclonal antibodies. Cancer Res 54: 3305-3314, 1994.
3. 2+ channel expression at the cell surface by the small G-protein kir/Gem. Nature 411: 701-706, 2001.
4. Bronner F and Freund T. Intestinal CaBP: a new quantitative index of vitamin D deficiency in the rat. Am J Physiol 229: 689-694, 1975.
5. Cross HS, Farsoudi KH, and Peterlik M. Growth inhibition of human colon adenocarcinoma-derived Caco-2 cells by 1,25-dihydroxyvitamin D3 and two synthetic analogs: relation to in vitro hypercalcemic potential. Naunyn Schmiedebergs Arch Pharmacol 347: 105-110, 1993.
6. Damstrup L, Kuwada SK, Dempsey PJ, Brown CL, Hawkey CJ, Poulsen HS, Wiley HS, and Coffey RJ Jr. Amphiregulin acts as an autocrine growth factor in two human polarizing colon cancer lines that exhibit domain selective EGF receptor mitogenesis. Br J Cancer 80: 1012-1019, 1999.
7. DeLuca HF. New concepts of vitamin D functions. Ann NY Acad Sci 669: 59-68, discussion 68-69, 1992.
8. Farrell RE Jr. Determination of nucleic acid concentration and purity. In: RNA Methodologies. San Diego, CA: Academic, 1998, p. 94-103.
9. Finch S, Joseloff E, and Bowden T. JunB negatively regulates AP-1 activity and cell proliferation of malignant mouse keratinocytes. J Cancer Res Clin Oncol 128: 3-10, 2002.
10. Fischer R, Wei Y, Anagli J, and Berchtold MW. Calmodulin binds to and inhibits GTP binding of the ras-like GTPase Kir/Gem. J Biol Chem 271: 25067-25070, 1996.
11. Fleet JC, Eksir F, Hance KW, and Wood RJ. Vitamin D-inducible calcium transport and gene expression in three Caco-2 cell lines. Am J Physiol Gastrointest Liver Physiol 283: G618-G625, 2002. First published December 19, 2001; 10.1152/ajpgi.00269.2001.
12. Fleet JC and Wood RJ. Identification of calbindin D-9k mRNA and its regulation by 1,25-dihydroxyvitamin D3 in Caco-2 cells. Arch Biochem Biophys 308: 171-174, 1994.
13. Giuliano AR, Franceschi RT, and Wood RJ. Characterization of the vitamin D receptor from the Caco-2 human colon carcinoma cell line: effect of cellular differentiation. Arch Biochem Biophys 285: 261-269, 1991.
14. Giuliano AR and Wood RJ. Vitamin D-regulated calcium transport in Caco-2 cells: unique in vitro model. Am J Physiol Gastrointest Liver Physiol 260: G207-G212, 1991.
15. Grasset E, Bernabeu J, and Pinto M. Epithelial properties of human colonic carcinoma cell line Caco-2: effect of secretagogues. Am J Physiol Cell Physiol 248: C410-C418, 1985.
16. Grasset E, Pinto M, Dussaulx E, Zweibaum A, and Desjeux JF. Epithelial properties of human colon carcinoma cell line Caco-2: electrical parameters. Am J Physiol Cell Physiol 247: C260-C267, 1984.
17. Gulliford T, English J, Colston KW, Menday P, Moller S, and Coombes RC. A phase I study of the vitamin D analogue EB 1089 in patients with advanced breast and colorectal cancer. Br J Cancer 78: 6-13, 1998.
18. Guzey M and DeLuca HF. A group of deltanoids (vitamin D analogs) regulate cell growth and proliferation in small cell carcinoma cell lines. Res Commun Mol Pathol Phannacol 98: 3-18, 1997.
19. Halline AG, Davidson NO, Skarosi SF, Sitrin MD, Tietze C, Alpers DH, and Brasitus TA. Effects of 1,25-dihydroxyvitamin D3 on proliferation and differentiation of Caco-2 cells. Endocrinology 134: 1710-1717, 1994.
20. Halline AG, Davidson NO, Skarosi SF, Sitrin MD, Tietze C, Alpers DH, and Brasitus TA. Effects of 1,25-dihydroxyvitamin D3 on proliferation and differentiation of Caco-2 cells. Endocrinology 134: 1710-1717, 1994.
21. Hauck W and Stanners CP. Control of carcinoembryonic antigen gene family expression in a differentiating colon carcinoma cell line, Caco-2. Cancer Res 51: 3526-3533, 1991.
22. Haussler MR, Whitfield GK, Haussler CA, Hsieh JC, Thompson PD, Selznick SH, Dominguez CE, and Jurutka PW. The nuclear vitamin D receptor: biological and molecular regulatory properties revealed. J Bone Miner Res 13: 325-349, 1998.
23. Inaba M, Okuno S, Nishizawa Y, Yukioka K, Otani S, Matsui-Yuasa I, Morisawa S, DeLuca HF, and Morii H. Biological activity of fluorinated vitamin D analogs at C-26 and C-27 on human promyelocytic leukemia cells, HL-60. Arch Biochem Biophys 258: 421-425, 1987.
24. Ivanov SV, Kuzmin I, Wei MH, Pack S, Geil L, Johnson BE, Stanbridge EJ, and Lerman MI. Down-regulation of transmembrane carbonic anhydrases in renal cell carcinoma cell lines by wild-type von Hippel-Lindau transgenes. Proc Natl Acad Sci USA 95: 12596-12601, 1998.
25. Jing C, El-Ghany MA, Beesley C, Foster CS, Rudland PS, Smith P, and Ke Y. Tazarotene-induced gene 1 (TIG1) expression in prostate carcinomas and its relationship to tumorigenicity. J Natl Cancer Inst 94: 482-490, 2002.
26. Kivela A, Parkkila S, Saarnio J, Karttunen TJ, Kivela J, Parkkila AK, Waheed A, Sly WS, Grubb JH, Shah G, Tureci O, and Rajaniemi H. Expression of a novel transmembrane carbonic anhydrase isozyme XII in normal human gut and colorectal tumors. Am J Pathol 156: 577-584, 2000.
27. Kunapuli SP, Singh H, Singh P, and Kumar A. Ceruloplasmin gene expression in human cancer cells. Life Sci 40: 2225-2228, 1987.
28. Maguire J, Santoro T, Jensen P, Siebenlist U, Yewdell J, and Kelly K. Gem: an induced, immediate early protein belonging to the Ras family. Science 265: 241-244, 1994.
29. 2+ channels. J Biol Chem 273: 18930-18935, 1998.
30. Meyers MB, Schneider KA, Spengler BA, Chang TD, and Biedler JL. Sorcin (V19), a soluble acidic calcium-binding protein overproduced in multidrug-resistant cells. Identification of the protein by anti-sorcin antibody. Biochem Pharmacol 36: 2373-2380, 1987.
31. Minghetti PP and Norman AW. 1,25(OH)2-vitamin D3 receptors: gene regulation and genetic circuitry. FASEB J 2: 3043-3053, 1988.
32. Nagpal S, Patel S, Asano AT, Johnson AT, Duvic M, and Chandraratna RA. Tazarotene-induced gene 1 (TIG1), a novel retinoic acid receptor-responsive gene in skin. J Invest Dermatol 106: 269-274, 1996.
33. Nickerson T and Huynh H. Vitamin D analogue EB1089-induced prostate regression is associated with increased gene expression of insulin-like growth factor binding proteins. J Endocrinol 160: 223-229, 1999.
34. Norman A. Intestinal calcium absorption: a vitamin D-hormone-mediated adaptive response. Am J Clin Nutr 51: 290-300, 1990.
35. Orzech E, Livshits L, Leyt J, Okhrimenko H, Reich V, Cohen S, Weiss A, Melamed-Book N, Lebendiker M, Altschuler Y, and Aroeti B. Interactions between adaptor protein-1 of the clathrin coat and microtubules via type 1a microtubule-associated proteins. J Biol Chem 276: 31340-31348, 2001.
36. Peyrard M, Parveneh S, Lagercrantz S, Ekman M, Fransson I, Sahlen S, and Dumanski JP. Cloning, expression pattern, and chromosomal assignment to 16q23 of the human gamma-adaptin gene (ADTG). Genomics 50: 275-280, 1998.
37. Raju KS, Alessandri G, Ziche M, and Gullino PM. Ceruloplasmin, copper ions, and angiogenesis. J Natl Cancer Inst 69: 1183-1188, 1982.
38. Schutte J, Viallet J, Nau M, Segal S, Fedorko J, and Minna J. jun-B inhibits and c-fos stimulates the transforming and trans-activating activities of c-jun. Cell 59: 987-997, 1989.
39. Shaulian E and Karin M. AP-I as a regulator of cell life and death. Nat Cell Biol 4: E131-136, 2002.
40. Sonna LA, Cullivan ML, Sheldon HK, Pratt RE, and Lilly CM. Effect of hypoxia on gene expression by human hepatocytes (HepG2). Physiol Genomics 12: 195-207, 2003. First published December 3, 2002; 10. 1152/ physiolgenomics. 00104.2002.
41. Sonna LA, Gaffin SL, Pratt RE, Cullivan ML, Angel KC, and Lilly CM. Effect of acute heat shock on gene expression by human peripheral blood mononuclear cells. J Appl Physiol 92: 2208-2220, 2002. First published January 11, 2002; 10.1152/japplphysiol.01002.2001.
42. Stassar MJ, Devitt G, Brosius M, Rinnab L, Prang J, Schradin T, Simon J, Petersen S, Kopp-Schneider A, and Zoller M. Identification of human renal cell carcinoma associated genes by suppression subtractive hybridization. Br J Cancer 85: 1372-1382, 2001.
43. Tomon M, Tenenhouse HS, and Jones G. Expression of 25-hydroxyvitamin D3-24-hydroxylase activity in Caco-2 cells. An in vitro model of intestinal vitamin D catabolism. Endocrinology 126: 2868-2875, 1990.
44. Tong WM, Kallay E, Hofer H, Hulla W, Manhardt T, Peterlik M, and Cross HS. Growth regulation of human colon cancer cells by epidermal growth factor and 1,25-dihydroxyvitamin D3 is mediated by mutual modulation of receptor expression. Eur J Cancer 34: 2119-2125, 1998.
45. Tureci O, Sahin U, Vollmar E, Siemer S, Gottert E, Seitz G, Parkkila AK, Shah GN, Grubb JH, Pfreundschuh M, and Sly WS. Human carbonic anhydrase XII: cDNA cloning, expression, and chromosomal localization of a carbonic anhydrase gene that is overexpressed in some renal cell cancers. Proc Natl Acad Sci USA 95: 7608-7613, 1998.
46. Wood RJ, Tchack L, and Taparia S. 1,25-Dihydroxyvitamin D3 increases the expression of the CaT1 epithelial calcium channel in the Caco-2 human intestinal cell line. BMC Physiol 1: 11, 2001.
47. Zweibaum A, Hauri HP, Sterchi E, Chantret I, Haffen K, Bamat J, and Sordat B. Immunohistological evidence, obtained with monoclonal antibodies, of small intestinal brush border hydrolases in human colon cancers and foetal colons. Int J Cancer 34: 591-598, 1984.
48. Zweibaum A, Triadou N, Kedinger M, Augeron C, Robine-Leon S, Pinto M, Rousset M, and Haffen K. Sucrase-isomaltase: a marker of foetal and malignant epithelial cells of the human colon. Int J Cancer 32: 407-412, 1983.