Microsatellite diversity, population subdivision and gene flow in the Lipizzan horse

Animal Genetics

Volumn 35, Issue 4, 2004, Pages 285-292

  Achmann, R ^a,g   Curik, I ^b   Dovc, P ^c   Kavar, T ^c   Bodo, I ^d   Habe, F ^c   Marti, E ^e   Solkner J ^f   Brem, G ^a  

^a LUDWIG BOLTZMANN INSTITUTE FOR LUNG VASCULAR RESEARCH   (Austria)

^b UNIVERSITY OF ZAGREB   (Croatia)

^c UNIVERSITY OF LJUBLJANA   (Slovenia)

^d UNIVERSITY OF VETERINARY MEDICINE   (Hungary)

^e Institute of Animal Breeding   (Switzerland)

^f UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^g Danfoss GmbH   (Germany)

Author keywords

Conservation genetics; Gene flow; Genetic structure; Lipizzan horse; Microsatellite diversity

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; EUROPE; GENE FREQUENCY; GENETIC VARIABILITY; GENETICS; HORSE; MOLECULAR EVOLUTION; POPULATION GENETICS; PRINCIPAL COMPONENT ANALYSIS; SPECIES DIFFERENCE;

ANIMALS; CLUSTER ANALYSIS; EUROPE; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENETICS, POPULATION; HORSES; MICROSATELLITE REPEATS; PRINCIPAL COMPONENT ANALYSIS; SPECIES SPECIFICITY; VARIATION (GENETICS);

ANIMALIA; EQUIDAE; EQUUS CABALLUS; MAMMALIA;

EID: 3843135041     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2004.01157.x     Document Type: Article

References (34)

1. Achmann R., Huber T., Wallner B., Dove P., Müller M. & Brem G. (2001) Base substitutions in the sequences flanking microsatellite markers HMS3 and ASB2 interfere with parentage testing in the Lipizzan horse. Animal Genetics 32, 52.
2. Amos W. & Balmford A. (2001) When does conservation genetics matters? Heredity 87, 257-65.
3. Beaumont M.A. & Bruford M.W. (1999) Microsatellites in conservation genetics. In: Microsatellites: Evolution and Applications (Ed. by D.B. Goldstein & C. Schlötterer). pp. 165-82. Oxford University Press. Oxford, UK.
4. Belkhir K., Borsa P., Chikhi L., Raufaste N. & Bonhomme F. (2002) GENETIX. Version 4.04 logiciel sous Windows TM pour la Genetique des populations. Laboratoire Génome. Populations. Interactions CNRS UMR 5000. Université Montpellier II. Montpellier, France.
5. Bjørnstad G., Gunby E. & Røed K.H. (2000) Genetic structure of Norwegian horse breeds. Journal of Animal Breeding and Genetics 117, 307-17.
6. Buchanan F.C., Adams L.J., Littlejohn R.P., Maddox J.F. & Crawford A.M. (1994) Determination of evolutionary relationship among sheep breeds using microsatellites. Genomics 22, 401-5.
7. Canon J., Checa M.L., Carleos C., Vega-Pla J.L., Vallejo M. & Dunner S. (2000) The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data. Animal Genetics 31, 39-48.
8. Chakraborty R. & Jin L. (1993) Determination of relatedness between individuals by DNA fingerprinting. Human Biology 65, 875-95.
9. Cornuet J.-M., Piry S., Luikart G., Estroup A. & Solignac M. (1999) New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153, 1989-2000.
10. Cunningham E.P., Dooley J.J., Splan R.K. & Bradley D.G. (2001) Microsatellite diversity, pedigree relatedness and the contributions of founder lineages to thoroughbred horses. Animal Genetics 32, 360-4.
11. Curik I., Fraser D., Eder C., Achmann R., Swinburne J., Binns M., Crameri R., Brem G., Sölkner J. & Marti E. (2003a) Association between the MHC gene region and variation of the serum IgE levels against specific mould allergens in the horse. Genetics Selection Evolution 35 (Suppl. 1), S177-90.
12. Curik I., Zechner P., Sölkner J., Achmann R., Bodo I., Dove P., Kavar T., Marti E. & Brem G. (2003b) Inbreeding, microsatellite heterozygosity, and morphological traits in Lipizzan horses. Journal of Heredity 94, 125-32.
13. Eder C., Curik I., Brem G., Crameri R., Bodo I., Habe F., Lazary S., Sölkner J. & Marti E. (2001) Influence of environmental and genetic factors on allergen-specific immunoglobulin-E levels in sera from Lipizzan horses. Equine Veterinary Journal 33, 714-20.
14. Fan B., Wang Z.-G., Li Y.-J. et al (2002) Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers. Animal Genetics 33, 422-7.
15. Friendly M. (1991) SAS® System for Statistical Graphics. 1 edn. SAS Institute Inc., Cary, NC, USA.
16. Goldstein D.B. & Pollock D.D. (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. Journal of Heredity 88, 335-42.
17. Guo S.W. & Thompson E.A. (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361-72.
18. Hochberg Y. (1988) A sharper Bonferroni procedure for multiple significance testing. Biometrika 75, 800-3.
19. Kavar T., Habe F., Brem G. & Dově P. (1999) Mitochondrial D-loop sequence variation among the 16 maternal lines of the Lipizzan horse breed. Animal Genetics 30, 423-30.
20. MacHugh D.E., Loftus R.T., Cunningham P. & Bradley D.G. (1998) Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers. Animal Genetics 29, 333-40.
21. Maudet C., Miller C., Bassano B., Breitenmoser-Würsten C., Gautier D., Obexer-Ruff G., Michallet J., Taberlet P. & Luikart G. (2002) Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine ibex [Capra ibex (ibex)]. Molecular Ecology 11, 421-36.
22. Page R.D.M. (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-8.
23. Raymond M. & Roussel F. (1995) GENEPOP, Version 1.2 population genetics software for exact tests and ecumenicsm. Journal of Heredity 86, 248-9.
24. Saitbekova N., Gailard C., Obexer-Ruff G. & Dolf G. (1999) Genetic diversity in Swiss goat breeds based on microsatellite analysis. Animal Genetics 30, 36-41.
25. SAS Institute Inc. (1999-2001) SAS/STAT Software: Changes and Enhancements Through Release 8.02. Cary, NC, USA.
26. Sneath P.H.A. & Sokal R.R. (1973) Numerical Taxonomy. W.H. Freeman, San Francisco, CA, USA.
27. Vilà C., Leonard J.A., Götherström A., Marklund S., Sandberg K., Lindén K., Wayne R.K. & Ellegren H. (2001) Widespread origins of domestic horse lineages. Science 291, 474-7.
28. Weir B.S. & Cockerham C.C. (1984) Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-70.
29. Wenz H., Robertson J.M., Menchen F., Oaks F., Demorest D.M., Scheibler D., Rosenblum B.B., Wike C., Gilbert D.A. & Efcavitch J.W. (1998) High precision genotyping by denaturating capillary electrophoresis. Genome Research 8, 69-80.
30. Wimmers K., Ponksuksili S., Schmoll F., Hardge T., Hatzipanagiotou A., Weber J., Wostmann S., Olek K. & Schellander K. (1998) Efficiency of microsatellite markers of the international standard panel for parentage control in German horse population. Zuchtungskunde 70, 233-41.
31. Wright S. (1951) The genetical structure of populations. Annual Eugenetics 15, 323-54.
32. Wright S. (1969) The Theory of Gene Frequencies: Evolution and the Genetics of Populations. Vol. 2. Chicago University press. Chicago, USA.
33. Zechner P., Zohman F., Sölkner J., Bodo I., Habe F., Marti E. & Brem G. (2001) Morphological description of the Lipizzan horse population. Livestock Production Science 69, 163-77.
34. Zechner P., Sölkner J., Druml T., Baumung R., Achmann R., Bodo I., Marti E., Habe F. & Brem G. (2002) Analysis of diversity and population structure in the Lipizzan horse breed based on pedigree information. Livestock Production Science 77, 137-46.