Cloning of genes expressed early during cellulase induction in Hypocrea jecorina by a rapid subtraction hybridization approach

Fungal Genetics and Biology

Volumn 41, Issue 9, 2004, Pages 877-887

  Schmoll, Monika ^a   Zeilinger, Susanne ^a   Mach, Robert L ^a   Kubicek, Christian P ^a  

^a VIENNA UNIVERSITY OF TECHNOLOGY   (Austria)

Author keywords

Cellulose signal transduction; Hypocrea jecorina; Subtraction hybridization; Trichoderma reesei

Indexed keywords

BETA GLUCOSIDASE; CELLULASE; CELLULOSE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; ELONGATION FACTOR 1ALPHA; GLUCAN SYNTHASE; MESSENGER RNA; MYOINOSITOL 1 PHOSPHATE SYNTHASE; SOPHOROSE;

ARTICLE; DATA BASE; FUNGAL GENE; FUNGAL STRAIN; FUNGUS MUTANT; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE INDUCTION; GENE MUTATION; GENETIC ANALYSIS; GENETIC CODE; GENETIC TRANSCRIPTION; HYPOCREA; HYPOCREA JECORINA; MIGRATION; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; RNA TRANSLATION; SEQUENCE HOMOLOGY; SUBTRACTIVE HYBRIDIZATION; TRANSCRIPTION INITIATION; WILD TYPE;

BLOTTING, NORTHERN; CCAAT-BINDING FACTOR; CLONING, MOLECULAR; DNA, FUNGAL; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; GLUCANS; HYPOCREA; MOLECULAR SEQUENCE DATA; MYO-INOSITOL-1-PHOSPHATE SYNTHASE; PEPTIDE ELONGATION FACTOR 1; RNA, FUNGAL; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

FUNGI; FUSARIUM; HYPOCREA; HYPOCREA JECORINA; NEUROSPORA; PODOSPORA ANSERINA; TRICHODERMA;

EID: 3843103524     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fgb.2004.06.002     Document Type: Article

References (45)

1. Abrahao-Neto J., et al. Mitochondrial functions mediate cellulase gene expression in Trichoderma reesei. Biochemistry. 34(33):1995;10456-10462
2. Aro N., Saloheimo A., Ilmen M., Penttila M. ACEII, a novel transcriptional activator involved in regulation of cellulase and xylanase genes of Trichoderma reesei. J. Biol. Chem. 276(26):2001;24309-24314
3. Berrocal-Tito G., Sametz-Baron L., Eichenberg K., Horwitz B.A., Herrera-Estrella A. Rapid blue light regulation of a Trichoderma harzianum photolyase gene. J. Biol. Chem. 274(20):1999;14288-14294
4. Berrocal-Tito G.M., Rosales-Saavedra T., Herrera-Estrella A., Horwitz B.A. Characterization of blue-light and developmental regulation of the photolyase gene phr1 in Trichoderma harzianum. Photochem. Photobiol. 71(5):2000;662-668
5. Buchert J., et al. Applications of Trichoderma reesei enzymes in the pulp and paper industry. Kubicek C., Harman G.E. Trichoderma and Gliocladium. 1998;343-363 Taylor & Francis, London
6. Chambergo F.S., et al. Elucidation of the metabolic fate of glucose in the filamentous fungus Trichoderma reesei using expressed sequence tag (EST) analysis and cDNA microarrays. J. Biol. Chem. 277(16):2002;13983-13988
7. Chang J.S., et al. Interaction of elongation factor-1 α and pleckstrin homology domain of phospholipase C-gamma 1 with activating its activity. J. Biol. Chem. 277(22):2002;19697-19702
8. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162(1):1987;156-159
9. de Faria F.P., Te O.V., Bergquist P.L., Azevedo M.O., Nevalainen K.M. Expression and processing of a major xylanase (XYN2) from the thermophilic fungus Humicola grisea var. thermoidea in Trichoderma reesei. Lett. Appl. Microbiol. 34(2):2002;119-123
10. Diatchenko L., Chenchik A., Siebert P. Suppression subtractive hybridization: a method for generating subtracted cDNA libraries starting from poly(A+) or total RNA. Siebert P., Larrick J. RT-PCR Methods for Gene Cloning and Analysis. 1998;213-239 Biotechniques Books, MA
11. Foreman P.K., et al. Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei. J. Biol. Chem. 278(34):2003;31988-31997
12. Galante Y., De Conti A., Monteverdi R. Application of Trichoderma enzymes in the textile industry. Harman K.C. Trichoderma and Gliocladium. 1998;311-325 Taylor & Francis, London
13. Galante Y., De Conti A., Monteverdi R. Application of Trichoderma enzymes in the food and feed industries. Harman G.E., Kubicek C.P. Trichoderma and Gliocladium. 1998;327-342 Taylor & Francis, London
14. Graia F., Berteaux-Lecellier V., Zickler D., Picard M. Ami1, an orthologue of the Aspergillus nidulans apsA gene, is involved in nuclear migration events throughout the life cycle of Podospora anserina. Genetics. 155(2):2000;633-646
15. Heintzen C., Loros J.J., Dunlap J.C. The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting. Cell. 104(3):2001;453-464
16. Huang F., Adelman J., Jiang H., Goldstein N.I., Fisher P.B. Differentiation induction subtraction hybridization (DISH): a strategy for cloning genes displaying differential expression during growth arrest and terminal differentiation. Gene. 236(1):1999;125-131
17. Huang F., Adelman J., Jiang H., Goldstein N.I., Fisher P.B. Identification and temporal expression pattern of genes modulated during irreversible growth arrest and terminal differentiation in human melanoma cells. Oncogene. 18(23):1999;3546-3552
18. Ilmen M., Onnela M.L., Klemsdal S., Keranen S., Penttila M. Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei. Mol. Gen. Genet. 253(3):1996;303-314
19. Ilmen M., Saloheimo A., Onnela M.L., Penttila M.E. Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei. Appl. Environ. Microbiol. 63(4):1997;1298-1306
20. Ilmen M., Thrane C., Penttila M. The glucose repressor gene cre1 of Trichoderma: isolation and expression of a full-length and a truncated mutant form. Mol. Gen. Genet. 251(4):1996;451-460
21. Ji W., Wright M.B., Cai L., Flament A., Lindpaintner K. Efficacy of SSH PCR in isolating differentially expressed genes. BMC Genomics. 3(1):2002;12
22. Jiang H., Kang D.C., Alexandre D., Fisher P.B. RaSH, a rapid subtraction hybridization approach for identifying and cloning differentially expressed genes. Proc. Natl. Acad. Sci. USA. 97(23):2000;12684-12689
23. Kang D.C., LaFrance R., Su Z.Z., Fisher P.B. Reciprocal subtraction differential RNA display: an efficient and rapid procedure for isolating differentially expressed gene sequences. Proc. Natl. Acad. Sci. USA. 95(23):1998;13788-13793
24. Keranen S., Penttila M. Production of recombinant proteins in the filamentous fungus Trichoderma reesei. Curr. Opin. Biotechnol. 6(5):1995;534-537
25. Majumder A.L., Johnson M.D., Henry S.A. 1L-myo-inositol-1-phosphate synthase. Biochim. Biophys. Acta. 1348(1-2):1997;245-256
26. Mandels M., Andreotti R. Problems and challenges in the cellulose to cellulase fermentation. Process Biochem. 13:1978;6-13
27. Nakari T., Alatalo E., Penttila M.E. Isolation of Trichoderma reesei genes highly expressed on glucose-containing media: characterization of the tef1 gene encoding translation elongation factor 1 alpha. Gene. 136(1-2):1993;313- 318
28. Pellequer J.L., Wager-Smith K.A., Kay S.A., Getzoff E.D. Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc. Natl. Acad. Sci. USA. 95(11):1998;5884-5890
29. Ponting C.P., Aravind L. PAS: a multifunctional domain family comes to light. Curr. Biol. 7(11):1997;R674-R677
30. Proud C.G. Regulation of mammalian translation factors by nutrients. Eur. J. Biochem. 269(22):2002;5338-5349
31. Saloheimo A., Aro N., Ilmen M., Penttila M. Isolation of the ace1 gene encoding a Cys(2)-His(2) transcription factor involved in regulation of activity of the cellulase promoter cbh1 of Trichoderma reesei. J. Biol. Chem. 275(8):2000;5817-5825
32. Schmoll, M., 2003. Regulation of cellulase expression and signal transduction in the filamentous fungus Hypocrea jecorina (Trichoderma reesei). Ph.D. Thesis, TU, Vienna
33. Schmoll M., Kubicek C.P. Regulation of Trichoderma cellulase formation: lessons in molecular biology from an industrial fungus. A review. Acta Microbiol. Immunol. Hung. 50(2-3):2003;125-145
34. Sternberg D., Mandels G.R. Induction of cellulolytic enzymes in Trichoderma reesei by sophorose. J. Bacteriol. 139(3):1979;761-769
35. Talapatra S., Wagner J.D., Thompson C.B. Elongation factor-1 alpha is a selective regulator of growth factor withdrawal and ER stress-induced apoptosis. Cell Death Differ. 9(8):2002;856-861
36. Taylor B.L., Zhulin I.B. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63(2):1999;479-506
37. Torigoi E., et al. Mutants of Trichoderma reesei are defective in cellulose induction, but not basal expression of cellulase-encoding genes. Gene. 173(2):1996;199-203
38. Ulmasov T., Hagen G., Guilfoyle T.J. ARF1, a transcription factor that binds to auxin response elements. Science. 276(5320):1997;1865-1868
39. Uusitalo J.M., Nevalainen K.M., Harkki A.M., Knowles J.K., Penttila M.E. Enzyme production by recombinant Trichoderma reesei strains. J. Biotechnol. 17(1):1991;35-49
40. Yanisch-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33(1):1985;103-119
41. Zeilinger S., Ebner A., Marosits T., Mach R., Kubicek C.P. The Hypocrea jecorina HAP 2/3/5 protein complex binds to the inverted CCAAT-box (ATTGG) within the cbh2 (cellobiohydrolase II-gene) activating element. Mol. Genet. Genomics. 266(1):2001;56-63
42. Zeilinger S., Haller M., Mach R., Kubicek C.P. Molecular characterization of a cellulase-negative mutant of Hypocrea jecorina. Biochem. Biophys. Res. Commun. 277(3):2000;581-588
43. Zeilinger S., Mach R.L., Kubicek C.P. Two adjacent protein binding motifs in the cbh2 (cellobiohydrolase II-encoding) promoter of the fungus Hypocrea jecorina (Trichoderma reesei) cooperate in the induction by cellulose. J. Biol. Chem. 273(51):1998;34463-34471
44. Zeilinger S., Schmoll M., Pail M., Mach R.L., Kubicek C.P. Nucleosome transactions on the Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2 associated with cellulase induction. Mol. Genet. Genomics. 270(1):2003;46-55
45. Zhulin I.B., Taylor B.L., Dixon R. PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox. Trends Biochem. Sci. 22(9):1997;331-333