-
1
-
-
0031834225
-
It's raining SNP, hallelujah?
-
Chakravarti A. It's raining SNP, hallelujah?. Nature Genetics 19 (1998) 216-217
-
(1998)
Nature Genetics
, vol.19
, pp. 216-217
-
-
Chakravarti, A.1
-
2
-
-
0348226177
-
The haplotyping problem: An overview of computational models and solutions
-
Bonizzoni P., Della Vedova G., Dondi R., and Li J. The haplotyping problem: An overview of computational models and solutions. Journal of Computer Science and Technology 19 1 (2004) 1-23
-
(2004)
Journal of Computer Science and Technology
, vol.19
, Issue.1
, pp. 1-23
-
-
Bonizzoni, P.1
Della Vedova, G.2
Dondi, R.3
Li, J.4
-
4
-
-
0034566245
-
A practical algorithm for optimal inference of haplotypes from diploid populations
-
Altman R., Bailey T.L., Bourne P., Gribskov M., Lengauer T., Shindyalov I.N., Ten Eyck L.F., and Weissig H. (Eds), AAAI Press, Menlo Park, CA
-
Gusfield D. A practical algorithm for optimal inference of haplotypes from diploid populations. In: Altman R., Bailey T.L., Bourne P., Gribskov M., Lengauer T., Shindyalov I.N., Ten Eyck L.F., and Weissig H. (Eds). Proceedings of the Annual International Conference on Intelligent Systems for Molecular Biology, ISMB (2000), AAAI Press, Menlo Park, CA 183-189
-
(2000)
Proceedings of the Annual International Conference on Intelligent Systems for Molecular Biology, ISMB
, pp. 183-189
-
-
Gusfield, D.1
-
5
-
-
0034812677
-
Inference of haplotypes from samples of diploid populations: Complexity and algorithms
-
Gusfield D. Inference of haplotypes from samples of diploid populations: Complexity and algorithms. Journal of Computational Biology 8 3 (2001) 305-324
-
(2001)
Journal of Computational Biology
, vol.8
, Issue.3
, pp. 305-324
-
-
Gusfield, D.1
-
6
-
-
33644509032
-
Haplotype inference by pure parsimony
-
Proceedings of the Annual Symposium on Combinatorial Pattern Matching, CPM, Springer
-
Gusfield D. Haplotype inference by pure parsimony. Proceedings of the Annual Symposium on Combinatorial Pattern Matching, CPM. Lecture Notes in Computer Science vol. 2676 (2003), Springer 144-155
-
(2003)
Lecture Notes in Computer Science
, vol.2676
, pp. 144-155
-
-
Gusfield, D.1
-
7
-
-
10044241629
-
Haplotyping populations by pure parsimony: Complexity, exact and approximation algorithms
-
Lancia G., Pinotti C., and Rizzi R. Haplotyping populations by pure parsimony: Complexity, exact and approximation algorithms. INFORMS Journal on Computing 16 4 (2004) 17-29
-
(2004)
INFORMS Journal on Computing
, vol.16
, Issue.4
, pp. 17-29
-
-
Lancia, G.1
Pinotti, C.2
Rizzi, R.3
-
8
-
-
33751173122
-
A new integer programming formulation for the pure parsimony problem in haplotype analysis
-
Proceedings of Annual Workshop on Algorithms in Bioinformatics, WABI, Springer
-
Brown D.G., and Harrower J.M. A new integer programming formulation for the pure parsimony problem in haplotype analysis. Proceedings of Annual Workshop on Algorithms in Bioinformatics, WABI. Lecture Notes in Computer Science (2004), Springer 254-265
-
(2004)
Lecture Notes in Computer Science
, pp. 254-265
-
-
Brown, D.G.1
Harrower, J.M.2
-
9
-
-
0038219512
-
Haplotyping as perfect phylogeny: A direct approach
-
Bafna V., Gusfield D., Lancia G., and Yooseph S. Haplotyping as perfect phylogeny: A direct approach. Journal of Computational Biology 10 3-4 (2003) 323-340
-
(2003)
Journal of Computational Biology
, vol.10
, Issue.3-4
, pp. 323-340
-
-
Bafna, V.1
Gusfield, D.2
Lancia, G.3
Yooseph, S.4
-
11
-
-
38349131277
-
-
G. Lancia, R. Ravi, R. Rizzi, Haplotyping for disease association, Technical Report, Dipartimento di Matematica e Informatica, University of Udine, Udine, Italy, 2005 (submitted for publication)
-
-
-
-
12
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens M., Smith N., and Donnelly P. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 68 (2001) 978-989
-
(2001)
American Journal of Human Genetics
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.2
Donnelly, P.3
-
14
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
Clark A. Inference of haplotypes from PCR-amplified samples of diploid populations. Molecular Biology Evolution 7 (1990) 111-122
-
(1990)
Molecular Biology Evolution
, vol.7
, pp. 111-122
-
-
Clark, A.1
-
15
-
-
38349188106
-
-
D. Gusfield, Inference of haplotypes from PCR - Amplified samples of diploid populations: Complexity and algorithms, Technical Report cse-99-6, University of California at Davis, Deptartment of Computer Science, Davis, CA, 1999
-
-
-
-
16
-
-
0003895164
-
-
Springer, Berlin
-
Ausiello G., Crescenzi P., Gambosi G., Kann V., Marchetti-Spaccamela A., and Protasi M. Complexity and Approximation. Combinatorial Optimization Problems and their Approximability Properties (1999), Springer, Berlin
-
(1999)
Complexity and Approximation. Combinatorial Optimization Problems and their Approximability Properties
-
-
Ausiello, G.1
Crescenzi, P.2
Gambosi, G.3
Kann, V.4
Marchetti-Spaccamela, A.5
Protasi, M.6
-
17
-
-
38349087455
-
-
E. Hubbel, Unpublished manuscript, 2002
-
-
-
-
18
-
-
32644447096
-
A polynomial solution to a special case of the parsimony haplotyping problem
-
Lancia G., and Rizzi R. A polynomial solution to a special case of the parsimony haplotyping problem. Operations Research Letters 34 3 (2006) 289-295
-
(2006)
Operations Research Letters
, vol.34
, Issue.3
, pp. 289-295
-
-
Lancia, G.1
Rizzi, R.2
-
19
-
-
35048855546
-
A survey of computational methods for determining haplotypes
-
Computational Methods for SNP and Haplotype Inference: DIMACS/RECOMB Satellite Workshop, Springer
-
Halldórsson B.V., Bafna V., Edwards N., Lippert R., Yooseph S., and Istrail S. A survey of computational methods for determining haplotypes. Computational Methods for SNP and Haplotype Inference: DIMACS/RECOMB Satellite Workshop. Lecture Notes in Computer Science vol. 2983 (2004), Springer 26-47
-
(2004)
Lecture Notes in Computer Science
, vol.2983
, pp. 26-47
-
-
Halldórsson, B.V.1
Bafna, V.2
Edwards, N.3
Lippert, R.4
Yooseph, S.5
Istrail, S.6
-
20
-
-
38349095801
-
-
D.G. Brown, J.M. Harrower, A new formulation for haplotype inference by pure parsimony, Technical Report CS-2005-03, University of Waterloo, Department of Computer Science, Waterloo, Canada, 2005
-
-
-
-
21
-
-
38349115897
-
-
K. Kalpakis, P. Namjoshi, Haplotype phasing using semidefinite programming, Technical Report, 2004
-
-
-
-
22
-
-
33644502168
-
-
Y.T. Huang, K.M. Chao, T. Chen, An approximation algorithm for haplotype inference by maximum parsimony, in: ACM Symposium on Applied Computing, SAC, 2005, pp. 146-150
-
-
-
-
23
-
-
0141617556
-
Haplotype inference by maximum parsimony
-
Wang L., and Xu Y. Haplotype inference by maximum parsimony. Bioinformatics 19 14 (2003) 1773-1780
-
(2003)
Bioinformatics
, vol.19
, Issue.14
, pp. 1773-1780
-
-
Wang, L.1
Xu, Y.2
-
24
-
-
38349175878
-
-
L. Tininini, P. Bertolazzi, A. Godi, Haplotype inference for large datasets, Technical Report, Istituto dei Sistemi Antonio Ruberti, CNR, Roma, Italy, 2005
-
-
-
-
26
-
-
0036374329
-
Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions
-
Myers G., Hannenhalli S., Istrail S., Pevzner P., and Waterman M. (Eds), ACM Press, New York, NY
-
Gusfield D. Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions. In: Myers G., Hannenhalli S., Istrail S., Pevzner P., and Waterman M. (Eds). Proceedings of the Annual International Conference on Computational Molecular Biology (RECOMB) (2002), ACM Press, New York, NY 166-175
-
(2002)
Proceedings of the Annual International Conference on Computational Molecular Biology (RECOMB)
, pp. 166-175
-
-
Gusfield, D.1
-
27
-
-
38349094973
-
A linear-time algorithm for the perfect phylogeny haplotyping problem
-
ACM Press, New York, NY
-
Ding Z., Filkov V., and Gusfield D. A linear-time algorithm for the perfect phylogeny haplotyping problem. Proceedings of the Annual International Conference on Computational Molecular Biology (RECOMB) (2005), ACM Press, New York, NY
-
(2005)
Proceedings of the Annual International Conference on Computational Molecular Biology (RECOMB)
-
-
Ding, Z.1
Filkov, V.2
Gusfield, D.3
-
28
-
-
4544326903
-
Opportunities for combinatorial optimization in computational biology
-
Greenberg H., Hart W., and Lancia G. Opportunities for combinatorial optimization in computational biology. INFORMS Journal on Computing 16 3 (2004) 1-22
-
(2004)
INFORMS Journal on Computing
, vol.16
, Issue.3
, pp. 1-22
-
-
Greenberg, H.1
Hart, W.2
Lancia, G.3
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