Entrapment of water by subunit c of ATP synthase

Journal of the Royal Society Interface

Volumn 5, Issue 20, 2008, Pages 311-318

  McGeoch, Julie E M ^a   McGeoch, Malcolm W ^b  

^a HARVARD UNIVERSITY   (United States)

^b PLEX LLC   (United States)

Author keywords

4 Gyr ago; Encapsulating water; Proteolipid

Indexed keywords

ADENOSINETRIPHOSPHATE; ELECTRON DIFFRACTION; PROTEINS; WATER;

SURFACE MOLECULES;

ENZYME ACTIVITY;

PROTEOLIPID; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE C; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; BETA SHEET; CRYSTAL STRUCTURE; ELECTRON DIFFRACTION; ENZYME SUBUNIT; HYDROGEN BOND; HYDROPHILICITY; PROTEIN INTERACTION; PROTEIN LIPID INTERACTION; SURFACE PROPERTY; TEMPERATURE MEASUREMENT; THREE DIMENSIONAL IMAGING; WATER ANALYSIS;

EID: 38349084388     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2007.1146     Document Type: Article

References (34)

1. Baaske, P., Weinert, F. M., Duhr, S., Lemke, K. H., Russell, M. J. & Braun, D. 2007 Extreme accumulation of nucleotides in simulated hydrothermal pore systems. Proc. Natl Acad. Sci. USA 104, 9346-9351. (doi:10.1073/pnas.0609592104)
2. Barnes, W. H. 1929 The crystal structure of ice between 0°C and -183°C. Proc. R. Soc. A 125, 670-693. (doi:10.1098/rspa.1929. 0195)
3. Blackman, M. & Lisgarten, N. D. 1957 The cubic and other structural forms of ice at low temperature and pressure. Proc. R. Soc. A 239, 93-107. (doi:10.1098/rspa.1957.0024)
4. Cameron, I. L., Kanal, K. M., Keener, C. R. & Fullerton, G. D. 1997 A mechanistic view of the non-ideal osmotic and motional behavior of intracellular water. Cell. Biol. Int. 21, 99-113. (doi:10.1006/cbir.1996.0123)
5. Chaplin, M. F. 1999 A proposal for the structuring of water. Biophys. Chem. 83, 211-221. (doi:10.1016/S0301-4622(99)00142-8)
6. Cody, G. D., Boctor, N. Z., Filley, T. R., Hazen, R. M., Scott, J. H., Sharma, A. & Yoder Jr, H. S. 2000 Primordial carbonylated iron-sulphide compounds and the synthesis of pyruvate. Science 289, 1337-1340. (doi:10.1126/science.289.5483.1337)
7. Coskun, Ü., Chaban, Y. L., Lingi, A., Müller, V., Keegstra, W., Boekema, E. J. & Grüber, G. 2004 Structure and subunit arrangement of the A-type ATP synthase complex from the Archaeon Methanococcus jannaschii visualized by electron microscopy. J. Biol. Chem. 279, 38 644-38 648. (doi:10.1074/jbc.M406196200)
8. Dittrich, P. S., Heule, M., Renaud, P. & Manz, A. 2006 On-chip extrusion of lipid vesicles and tubes through microsized apertures. Lab Chip 6, 488-493. (doi:10.1039/b517670k)
9. Dowell, L. G. & Rinfret, A. P. 1960 Low temperature forms of ice as studied by x-ray diffraction. Nature 188, 1144-1148. (doi:10.1038/1881144a0)
10. Dubochet, J., Adrian, M., Chang, J.-J., Homo, J.-C., Lepault, J., McDowall, A. W. & Schultz, P. 1988 Cryo-electron microscopy of vitrified specimens. Q. Rev. Biophys. 21, 129-228.
11. Duve, C. D. & Miller, S. L. 1991 Two-dimensional life? Proc. Natl Acad. Sci. USA 88, 10 014-10 017. (doi:10.1073/pnas.88.22.10014)
12. Dyer, M. R. & Walker, J. E. 1993 Sequences of the members of the human gene family for the c subunit of mitochondrial ATP synthase. Biochem. J. 293, 51-64.
13. Flannery, A. R., Graham, L. A. & Stevens, T. H. 2004 Topological characterization of the c, c′, and c″ subunits of the vacuolar ATPase from yeast Saccharomyces cerevisiae. J. Biol. Chem. 279, 39 856-39 862. (doi:10.1074/jbc.M406767200)
14. h determination by single-crystal x-ray diffractometry. J. Chem. Phys. 93, 1412-1417. (doi:10.1063/1.459150)
15. Hakanpää, J., Paananen, A., Askolin, S., Nakari-Setalas, T., Parkkinen, T., Penttila, M., Linder, M. B. & Rouvinen, J. 2004 Atomic resolution structure of the HFBII hydrophobin, a self-assembling amphiphile. J. Biol. Chem. 279, 534-539. (doi:10.1074/jbc.M309650200)
16. Martin, W. & Russell, M. J. 2003 On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells. Phil. Trans. R. Soc. B 358, 59-85. (doi:10.1098/rstb.2002.1183)
17. Martin, W. & Russell, M. J. 2006 On the origin of biochemistry at an alkaline hydrothermal vent. Phil. Trans. R. Soc. B 362, 1887-1925. (doi:10.1098/rstb.2006.1881)
18. McGeoch, J. E. M. & Guidotti, G. 1997 A 0.1-700 Hz current through a voltage-clamped pore: candidate protein for initiator of neural oscillations. Brain Res. 766, 188-194. (doi:10.1016/S0006-8993(97)00618-5)
19. McGeoch, M. W. & McGeoch, J. E. M. 1994 Power spectra and cooperativity of a calcium-regulated cation channel. Biophys. J. 66, 161-168.
20. McGeoch, J. E. M. & Palmer, D. N. 1999 Ion pores made of mitochondrial ATP synthase subunit c in the neuronal plasma membrane and Batten disease. Mol. Genet. Metab. 66, 387-392. (doi:10.1006/mgme.1999. 2822)
21. McGeoch, J. E. M., McGeoch, M. W., Carter, D. J. D., Shuman, R. F. & Guidotti, G. 2000 Biological-to-electronic interface with pores of ATP synthase subunit c in silicon nitride barrier. Med. Biol. Eng. Comput. 38, 113-119. (doi:10.1007/BF02344699)
22. Mojzsis, S. J., Arrhenius, G., Mckeegan, K. D., Harrison, T. M., Nutman, A. P. & Firend, C. R. L. 1996 Evidence for life on earth before 3,800 million years ago. Nature 334, 55-59. (doi:10.1038/384055a0)
23. Murray, B. J. & Bertram, A. K. 2006 Formation and stability of cubic ice in water droplets. Phys. Chem. Chem. Phys. 8, 186-192. (doi:10.1039/b513480c)
24. Perutz, M. F., Finch, J. T., Berriman, J. & Lesk, A. 2002 Amyloid fibers are water-filled nanotubes. Proc. Natl Acad. Sci. USA 99, 5591-5595. (doi:10.1073/pnas.042681399)
25. Raine, D. J. & Norris, V. 2007 Lipid doman boundaries as prebiotic catalysts of peptide bond formation. J. Theor. Biol. 246, 176-185. (doi:10.1016/j.jtbi.2006.12.019)
26. 0-ATP synthase. Biochim. Biophys. Acta 1553, 188-211. (doi:10.1016/S0005-2728(02) 00185-8)
27. Shimaoka, K. 1960 Electron diffraction study of ice. J. Phys. Soc. Jpn 15, 106-119. (doi:10.1143/JPSJ.15.106)
28. Singer, S. J. & Dewje, N. N. 2006 Evidence that Perutz's double-β-stranded subunit structure for β-amyloids also applies to their channel-forming structures in membranes. Proc. Natl Acad. Sci. USA 103, 1546-1550. (doi:10.1073/pnas.0509892103)
29. Soper, A. K. & Phillips, M. G. 1986 A new determination of the structure of water at 25°C. Chem. Phys. 107, 47-60. (doi:10.1016/0301-0104(86)85058-3)
30. Sugiyama, Y., Inoue, Y., Muneyuki, E., Haneda, H. & Fujimoto, M. 2006 AFM and TEM observations of α-helix to β-sheet conformation change occurring on carbon nanotubes. J. Microsc. 55, 143-149. (doi:10.1093/jmicro/dfl024)
31. Szilvay, G. R., Paananen, A., Laurikainen, K., Vuorimaa, E., Lemmetyinen, H., Peltonen, J. & Linder, M. B. 2007 Self-assembled hydrophobin protein films at the air-water interface: structural analysis and molecular engineering. Biochemistry 46, 2345-2354. (doi:10.1021/bi602358h)
32. Weik, M. 2003 Low-temperature behavior of water confined by biological macromolecules and its relation to protein dynamics. Eur. Phys. J. E 12, 153-158. (doi:10.1140/epje/i2003-10043-5)
33. Wilde, S. A., Valley, J. W., Peck, W. H. & Graham, C. M. 2001 Evidence from detrital zircons for the existence of continental crust and oceans on earth 4.4 Gyr ago. Nature 409, 175-178. (doi:10.1038/35051550)
34. Zhang, S. 2003 Fabrication of novel biomaterials through molecular self-assembly. Nat. Biotechnol. 21, 1171-1177. (doi:10.1038/nbt874)